BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479267
Length=1639
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17830.1 | Symbols: | Molecular chaperone Hsp40/DnaJ family... 2606 0.0
> AT3G17830.1 | Symbols: | Molecular chaperone Hsp40/DnaJ family
protein | chr3:6101789-6104650 FORWARD LENGTH=1780
Length=1780
Score = 2606 bits (1411), Expect = 0.0
Identities = 1569/1643 (95%), Gaps = 19/1643 (1%)
Strand=Plus/Plus
Query 1 CGTGTAAGAAGATGACCACTGAGCAAAAACCACGTTAAAACCCTCCGCCTATGAAATTCC 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 7 CGTGTAAGAAGATGACCACTGAGCAAAAACCACGTTAAAACCCTCCGCCTCTGAAATTCC 66
Query 61 GGAGGCTTCGAGGGAGATGAAATGGCTGCAATGGCTCGCTGTGCTTTGATTCCATCTATA 120
||| | ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 GGA------G-GGG-GATGAAATGGCTGCAATGGCTCGCTGTGCTTTGATTCCATCTATA 118
Query 121 AACCCAGCTCATAGCTTCCGTCATCAGTTTCCGCAACCCAATGCATCATTCT-TCTTACC 179
|||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||
Sbjct 119 AACCCAGCTCATAGCTTCCGTCATCAGTTTCCGCAACCCAATGCGTCATTCTAT-TTACC 177
Query 180 TCCCACTCTACCGAATTTTTT-GCGTGTTCGGAGATGTGGAATTTCCGGCGGATATCGCC 238
||||||||| ||| ||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 178 TCCCACTCTTCCG-ATTTTTTCGCGTGTTCGGAGATTTGGAATTTCCGGCGGATATCGCC 236
Query 239 GCCGTGTGATCATCATGGCAGCCGGAACCGATCACTACTCCACTTTGAATGTGAACCGCA 298
|||||||||||| |||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 237 GCCGTGTGATCACCATGGCCGCCGGAACTGATCACTACTCGACTTTGAATGTGAACCGCA 296
Query 299 ACGCTACCTTGCAGGAGATCAAGAGCTCGTATAGAAAACTCGCTCGCAAGTATCACCCGG 358
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 297 ATGCCACCTTGCAGGAGATCAAGAGCTCGTATAGAAAACTCGCTCGCAAGTATCACCCAG 356
Query 359 ATATGAACAAGAACCCTGGTGCAGAAGATAAGTTCAAACAGATTAGTGCTGCTTACGAGG 418
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 357 ATATGAACAAGAACCCTGGTGCAGAAGATAAGTTCAAACAGATAAGTGCTGCTTACGAGG 416
Query 419 TATTATCTGATGAGGAGAAGAGATCTGCATATGATCGATTCGGCGAGGCAGGTTTAGAAG 478
|||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 417 TATTATCTGATGAGGAGAAGAGATCTGCCTATGATCGGTTCGGCGAGGCTGGTTTAGAAG 476
Query 479 GAGATTTTAATGGATCACAGGATACTTCACCAGGGGTGGATCCATTTGACTTGTACAGTG 538
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GTGATTTTAATGGATCACAGGATACTTCACCAGGGGTGGATCCATTTGACTTGTACAGTG 536
Query 539 CATTCTTTGGAGGTTCTGATGGATTCTTTGGGGGAATGGGTGAATCAGGAGGGATGGGTT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CATTCTTTGGAGGTTCTGATGGATTCTTTGGGGGAATGGGTGAATCAGGAGGGATGGGTT 596
Query 599 TTGATTTCATGAATAAAAGAAGCCTAGACCTTGACATTCGGTGTGACCTGCGGTTGAGCT 658
|||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||
Sbjct 597 TTGATTTCATGAATAAGAGAAGCCTAGACCTTGACATTCGATATGACCTGCGGTTGAGCT 656
Query 659 TTGAAGAGTCAGTTTTTGGAGTAAAACGGGAGATCGAGGTTTCTTATTTAGAAACATGTG 718
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 657 TTGAAGAGGCAGTTTTTGGAGTAAAACGGGAGATTGAGGTTTCTTATTTAGAAACATGTG 716
Query 719 ATGGTTGTGGAGGAACAGGTGCTAAATCCAGTAACGCCATTAAACAGTGTAGTAGCTGTG 778
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 717 ATGGTTGTGGAGGAACTGGTGCTAAATCCAGTAACTCCATTAAACAGTGTAGTAGTTGTG 776
Query 779 ATGGTAAAGGACGTGTGATGAACTCTCAGAGAACACCCTTTGGAATTATGTCTCAGGTGT 838
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 777 ATGGTAAAGGACGTGTGATGAATTCTCAGAGAACACCCTTTGGAATCATGTCTCAGGTGT 836
Query 839 CCACTTGCTCCAAATGTGGTGGTGAAGGCAAAA-TCATCACTGATAAGTGTCGAAAGTGC 897
|||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||
Sbjct 837 CCACTTGCTCCAAATGTGGTGGTGAAGGAAAAACT-ATCACTGATAAGTGTCGAAAGTGC 895
Query 898 ATTGGCAACGGGAGACTACGGTCTAGGaaaaaaaTGGATGTTGTTGTCCCTCCTGGTGTC 957
||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||
Sbjct 896 ATTGGCAACGGGAGACTACGGGCTAGGAAAAAGATGGATGTTGTAGTCCCTCCTGGTGTC 955
Query 958 AGCGATAGAGCCACAATGCGAATTCAAGGAGAAGGTAACGTAGACAAGAGAAGTGGAAGA 1017
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 956 AGCGATAGAGCCACAATGCGAATTCAAGGAGAAGGTAACATGGACAAGAGAAGTGGAAGA 1015
Query 1018 GCCGGTGACTTGTTCATCGTACTTCAAGTTGATGAGAAGCGTGGAATTCGGCGGGAAGGG 1077
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GCTGGTGACTTGTTCATCGTACTTCAAGTTGATGAGAAGCGTGGAATTCGGCGGGAAGGG 1075
Query 1078 CTTAATTTATACTCCAATATCAACATAGATTTCACAGATGCTATACTTGGGGTGACCACA 1137
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1076 CTTAATTTATACTCCAATATCAACATAGATTTCACAGATGCTATACTTGGGGCGACCACA 1135
Query 1138 AAGGTAGAAACGGTTGAGGGAACAATGGATCTTCGAATTCCGCCAGGAACTCAGCCTGGT 1197
||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||
Sbjct 1136 AAGGTAGAAACGGTTGAGGGATCAATGGATCTTCGGATTCCGCCAGGAACTCAACCTGGC 1195
Query 1198 GACACCATGAAATTACCTAGGAAAGGAGTTCCAGACACAGATAGACCTTCAATCCGGGGA 1257
|||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1196 GACACCGTAAAATTACCTAGGAAAGGAGTTCCAGACACGGATAGACCTTCAATCCGGGGA 1255
Query 1258 GACCATTGCTTTGTAGTGAAGGTTTCGATCCCCAAAAAACTGAGCGAGACGGAGCGCAAG 1317
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1256 GACCATTGCTTTGTAGTGAAAATTTCGATCCCCAAAAAACTGAGCGAGAGGGAGCGCAAG 1315
Query 1318 TTGGTAGAGGAATTCTCGTCGCTCAGAAGATCTAGTAGTAGTACTGGACCTAATGAAACT 1377
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1316 TTGGTAGAGGAATTCTCGTCGCTCAGAAGATCTAGTAGTAGTACTGGACCTACTGAAACT 1375
Query 1378 CGTCAAGAGGAGCATTGTTTTGGCTCAGAGCCCAGAAAAGAACCACCGTCTTTGTGGCAT 1437
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1376 CGTCAAGAGGAGCAGAGTTTTGGCTCAGAGCCCAGAAAAGAACCA---TCTTTGTGGCAT 1432
Query 1438 AAAATGAAGAATTTCATAAGACCAGAAGATTCAAGAACGAAATTTGGGACTATGAGCTTG 1497
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 AAAATGAAGAATTTCATAAGACCAGAAGATTCAAGAACGAAATTTGGGACTATGAGCTTA 1492
Query 1498 AACCCATCACTACCACTACGAGGAATGAAAGTGTCAGAGACTTCAATTG-TTATCTCAGT 1556
||||||||| ||||| ||||| ||||||||||||||||||||||||||| || | |||||
Sbjct 1493 AACCCATCATTACCATTACGAAGAATGAAAGTGTCAGAGACTTCAATTGCTTTT-TCAGT 1551
Query 1557 CTTGGCTCTGTGTGTTATAACCTCGGCTGTTGCATTGGTTCAGAAGAAGGGTAATCGCTC 1616
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1552 CTTGGCTCTGTGCGTTATAACCTCGGCTGTTGCATTGGTACAGAAGAAGGGTAATCGCTT 1611
Query 1617 GAAACAAAAGAAAGAAACTTAAT 1639
|||||||||||||||||||||||
Sbjct 1612 GAAACAAAAGAAAGAAACTTAAT 1634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80973479085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5