BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479270
Length=1329
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17860.1 | Symbols: JAZ3, JAI3, TIFY6B | jasmonate-zim-domai... 1578 0.0
> AT3G17860.1 | Symbols: JAZ3, JAI3, TIFY6B | jasmonate-zim-domain
protein 3 | chr3:6119767-6123019 FORWARD LENGTH=1588
Length=1588
Score = 1578 bits (854), Expect = 0.0
Identities = 947/991 (96%), Gaps = 10/991 (1%)
Strand=Plus/Plus
Query 1 GCGATTTGTTAATAAAACTAGAAATTTCGGTGAATTAACTTCATTCCACGTTTTTTCATT 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 GCGATTTGTTAATAAAACTAGAAATTGCGGTGAATTAACTTCATTCCACGTTTTTTCATT 60
Query 61 TTCT-CCTCAAAAGTCTCTGTTTATTTCCCTTTTTCCGGCGAAGCTATA-TTAGCTTGAT 118
|||| |||||||||||||||||| ||| |||||||||||||||||| || ||||||||||
Sbjct 61 TTCTCCCTCAAAAGTCTCTGTTTTTTTTCCTTTTTCCGGCGAAGCTCTATTTAGCTTGAT 120
Query 119 TTCGGCGTTTAACACGCG-TTTAATCG--ACGAGAGATTTGAGATCGAATT-ATATTGTA 174
| |||||||||||||||| |||||||| || ||| ||||||||||||||| || |||||
Sbjct 121 TCCGGCGTTTAACACGCGTTTTAATCGAAAC-AGACATTTGAGATCGAATTAATTTTGTA 179
Query 175 ACGTTG-TGTGGTGTTTAATATAGATGGAGAGAGATTTTCTCGGGTTGGGTTCGAAAAAT 233
|| | ||| || |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GCG-GGCTGT-GTCTTTATTATAGATGGAGAGAGATTTTCTCGGGTTGGGTTCGAAAAAT 237
Query 234 TCTCCGATCACTGTCAAGGAGGAAACCAGCGAAAGCTCTAGAGATTCAGCTCCCAATAGA 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 238 TCTCCGATCACTGTCAAGGAGGAAACCAGCGAAAGCTCTAGAGATTCAGCTCCCAACAGA 297
Query 294 GGAATGAATTGGTCGTTCTCAAACAAAGTATCTGCTGCTTCTTCTCAGTTTCTATCTTTC 353
|||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||||| |||
Sbjct 298 GGAATGAACTGGTCTTTCTCAAACAAAGTATCAGCTTCTTCTTCTCAGTTTCTATCCTTC 357
Query 354 AGGCCATCTCAAGAAGATAGACATAGAAAGTCTGGAAATTATCATCTGCCTCACTCTGGT 413
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 358 AGGCCAACTCAAGAAGATAGACATAGAAAGTCTGGAAATTATCATCTTCCTCACTCTGGT 417
Query 414 TCCTTCATGCCATCATCAGTAGCTGATGTATATGATTCAAACCGCAAAGCTCCTTACAGT 473
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 418 TCCTTCATGCCATCATCAGTAGCTGATGTTTATGATTCAACCCGCAAAGCTCCTTACAGT 477
Query 474 ACTGTACAGGGAGTGAGGATGTTCCCTAATTCCAATCAACACGAAGACACTAACGCAGTT 533
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 478 TCTGTACAGGGAGTGAGGATGTTCCCTAATTCCAATCAACACGAAGAAACTAACGCAGTT 537
Query 534 TCCATGTCCATGCCGGGTTTCCAGTCTCATCATTATGCACCAGGAGGAAGAAGCTTCATG 593
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TCCATGTCGATGCCGGGTTTCCAGTCTCATCATTATGCACCAGGAGGAAGAAGCTTCATG 597
Query 594 AACAATAACAATAACTCACAACCTTTGGTAGGAGTTCCTATCATGGCACCTCCTATTTCA 653
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 598 AACAATAACAATAACTCACAACCTTTGGTAGGAGTTCCTATCATGGCACCTCCAATTTCA 657
Query 654 ATCCTTCCTCCTCCAGGTTCCATTGTAGGGACTACTGATATTAGATCTTCTTCCAAGCCA 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 ATCCTTCCTCCTCCAGGTTCCATTGTAGGGACTACTGATATTAGATCTTCTTCCAAGCCA 717
Query 714 ATAGGGTCACCTGCGCAGTTGACGATCTTTTATGCCGGTTCAGTTTGTGTTTACGATGAC 773
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 ATAGGTTCACCTGCGCAGTTGACGATCTTTTATGCCGGTTCAGTTTGTGTTTACGATGAC 777
Query 774 ATATCTCCTGATAAGGCAAAAGCGATAATGTTGCTAGCTGGGAACGGTTCCTCTATGCCT 833
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 778 ATATCTCCTGAAAAGGCAAAGGCGATAATGTTGCTAGCTGGGAACGGTTCCTCTATGCCT 837
Query 834 CGAGCCTTTTCACCGCCTCAAACTCATCAACAAGTGGTCCATCATGCTCGTGCCTCTGTC 893
| || |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 838 CAAGTCTTTTCGCCGCCTCAAACTCATCAACAAGTGGTCCATCATACTCGTGCCTCTGTC 897
Query 894 GATTCTTCAGCTATGCCTCCTAGCTTCATGCCTACAATATCTTATCTTAGCCCTGAAGCT 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GATTCTTCAGCTATGCCTCCTAGCTTCATGCCTACAATATCTTATCTTAGCCCTGAAGCT 957
Query 954 GGAAGTAGCACAAACGGACTCAGAGCAACAA 984
||||||||||||||||||||| |||| ||||
Sbjct 958 GGAAGTAGCACAAACGGACTCGGAGCCACAA 988
Score = 484 bits (262), Expect = 7e-136
Identities = 286/298 (96%), Gaps = 0/298 (0%)
Strand=Plus/Plus
Query 1001 CCCAGTAGCAGTTCCTTGTTCTACCAATGTAATAGCTCCAACAGTGGCTTTACCTCTGGC 1060
||||||| ||||| ||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1053 CCCAGTACCAGTTTCTTGTTCTACCAATGTAATGGCTCCAACAGTGGCATTACCTCTGGC 1112
Query 1061 TCGCAAAGCATCTCTGGCTAGGTTTTTAGAGAAACGCAAAGAAAGGGTCACGAGCGTATC 1120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 TCGCAAAGCATCCCTGGCTAGGTTTTTAGAGAAACGCAAAGAAAGGGTCACGAGCGTATC 1172
Query 1121 GCCATATTGCTTAGACAAGAAGTCATCGACAGATTGTCGCAGATCAATATCAGAATGCAT 1180
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1173 CCCATATTGCTTAGACAAGAAGTCATCGACAGATTGTCGCAGATCAATGTCTGAATGCAT 1232
Query 1181 TAGTTCTTCTCTCAGCTCTGCAACCTAATTTCATCTAAAGTAAGAAGGCTGCTTTAGACC 1240
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1233 TAGTTCTTCTCTCAGCTCTGCAACCTAATTTCATCTACAGTAAGAAGGTTGCTTTAGACC 1292
Query 1241 ACTCCACATCCATATTTGCATTTCAACGGCGGTCTTTTCAATTTCTCAGTTAAttttt 1298
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1293 ACTCCACATCCATATTTGCATTTCAATGGCGGTCTTTTCAATGTCTCAGTTAATTTTT 1350
Score = 60.2 bits (32), Expect = 5e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 1298 tttATATATACGATAGTGTATACTTTGTTTAC 1329
||||||||||||||||||||||||||||||||
Sbjct 1382 TTTATATATACGATAGTGTATACTTTGTTTAC 1413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65411310135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5