BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479273
Length=1188
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17880.1 | Symbols: HIP, ATTDX, ATHIP2, TDX | tetraticopepti... 1818 0.0
> AT3G17880.1 | Symbols: HIP, ATTDX, ATHIP2, TDX | tetraticopeptide
domain-containing thioredoxin | chr3:6123409-6126281 FORWARD
LENGTH=1436
Length=1436
Score = 1818 bits (984), Expect = 0.0
Identities = 1115/1179 (95%), Gaps = 6/1179 (1%)
Strand=Plus/Plus
Query 13 AAGGAAAAGGCAGACTTCGATGGTGGATGCGAATCAGGTAGCTGAGCTTAGAAGATTCAT 72
||| ||||||| || ||||||||||||||||| ||| ||||||||||| ||||||||| |
Sbjct 107 AAGAAAAAGGCGGAATTCGATGGTGGATGCGATTCAAGTAGCTGAGCTGAGAAGATTCGT 166
Query 73 CGAGCAGTTGAAATCGAATCCTTCGATTCTGCACGACCCTTGTCTGATTTTCTTCAAAGA 132
|||||||||||||| ||||||||||||||| ||||| ||| ||||| |||||||||||||
Sbjct 167 CGAGCAGTTGAAATTGAATCCTTCGATTCTCCACGATCCTAGTCTGGTTTTCTTCAAAGA 226
Query 133 ATATCTCCGAAGTTTAGGGGCTCAAGTTCCGAAGATTGAGCAAACTGAAAGAGATTATGA 192
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 227 ATATCTCCGAAGTTTAGGAGCTCAAGTTCCGAAGATTGAGAAAACTGAAAGAGATTATGA 286
Query 193 AGA-AAGGGCAGAGACAAAACCCAGTTTCTCTCCTAAACATGCTGATGATGATGATGATA 251
||| || ||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 287 AGATAA-GGCTGAGACAAAACCCAGTTTCTCTCCTAAACATGATGATGATGATGATGATA 345
Query 252 TTATGGAGTCTGATGTTGAACTGGACAA-TGCTGATGTAGTTGAACCTGACAATGAGCCT 310
|||||||||||||||||||||| ||||| | |||||||||||||||| ||||||||||||
Sbjct 346 TTATGGAGTCTGATGTTGAACTCGACAACT-CTGATGTAGTTGAACCAGACAATGAGCCT 404
Query 311 CCTCAGCCGATGGGAGATCCTACTGCTGAAGTGACCGATGATAATAGGGATGATGCTCAG 370
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 405 CCTCAGCCGATGGGAGACCCTACTGCTGAAGTGACCGATGAAAATAGGGATGATGCTCAG 464
Query 371 TTAGAGAAGAGCAAAGCTGTGGAGGAAATCTCTGATGGGAAGTTTGACGAAGCTATAGAG 430
| |||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||
Sbjct 465 TCAGAGAAGAGCAAAGCTATGGAGGCAATCTCTGATGGGAGGTTTGACGAAGCTATAGAG 524
Query 431 CATCTAACAAAAGCCGTCATGCTAAACCCTACTTCAGCAATCCTCTACGCCACTAGAGCT 490
|||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 525 CATCTAACAAAAGCTGTCATGCTAAATCCTACTTCAGCGATTCTCTACGCCACTAGAGCT 584
Query 491 ACCGTGTTTCTAAAAGTTAAGAAGCCAAATGCTGCAATTCGCGATGCCAACGTGGCGCTA 550
| |||||| ||||||||||||||||||||||||||||||| ||||||||||| ||| ||
Sbjct 585 AGTGTGTTTTTAAAAGTTAAGAAGCCAAATGCTGCAATTCGTGATGCCAACGTAGCGTTA 644
Query 551 CAGTTCAACCCTGATTCAGCTAAGGGGTACAAGTCACGAGGTATGGCTAGGGCCATGTTA 610
||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 645 CAGTTCAACTCTGATTCAGCTAAGGGGTACAAATCACGAGGTATGGCTAAGGCCATGTTA 704
Query 611 GGCCAATGGGAAGATGCTGCAGCTGACCTACATGTAGCATCAAAATTAGATTACGATGAG 670
|||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 705 GGCCAATGGGAAGAGGCTGCAGCTGATCTACATGTCGCATCAAAATTAGATTACGATGAG 764
Query 671 GAGATAGGGACGATGCTTAAGAAGGTTGAACCCAATGCAAAGAGAATCGAAGAACACCGC 730
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 GAGATAGGGACAATGCTTAAGAAGGTTGAACCCAATGCAAAGAGAATCGAAGAACACCGC 824
Query 731 AGGAAATATCAACGCCTGAGGAAAGAAAAGGAGCTCCAAAGGGCTGAACGCGAGAGAC-G 789
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 825 AGGAAATACCAACGCCTGAGGAAAGAAAAGGAGCTCCAAAGGGCTGAACGCGAGAGACGG 884
Query 790 ACAACAGCAAGAAGCCCAGGAGCGAGAAGCTCAGGCTGCACTCAATGACGGACAAGTGAT 849
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 885 A-AACAGCAAGAAGCCCAGGAGCGAGAAGCTCAGGCTGCACTCAATGACGGAGAAGTGAT 943
Query 850 TAGCATCCACTCAACAAGCGAGCTAGAAGCTAAGACAAAGGCCGCAAAGAAGGCATCGCG 909
|||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| ||
Sbjct 944 TAGCATCCACTCAACAAGCGAGCTAGAAGCAAAGACAAAGGCTGCTAAGAAGGCATCACG 1003
Query 910 TCTGCTCATCCTTTACTTCACAGCCACATGGTGTGGACCGTGCCGTTATATGTCTCCTCT 969
|||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 1004 TCTGCTCATCCTTTACTTCACAGCCACATGGTGTGGGCCATGCCGATATATGTCTCCTCT 1063
Query 970 GTACTCAAACCTGGCCACACAGCACCCAAGAGTCGTTTTCCTGAAAGTTGACATAGACGA 1029
||||||||||||||||||||||||| | |||||||||||| |||||||||| |||||| |
Sbjct 1064 GTACTCAAACCTGGCCACACAGCACTCGAGAGTCGTTTTCTTGAAAGTTGATATAGACAA 1123
Query 1030 GGCCAACGACGTGGCTGCTTCTTGGAACATTAGCAGCGTCCCGACCTTTTGCTTCATCAG 1089
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 GGCCAATGACGTGGCTGCTTCTTGGAACATTAGCAGCGTCCCGACCTTTTGCTTCATCAG 1183
Query 1090 AGATGGCAAAGAGGTGGACAAAGTTGTCGGAGCTGATAAAGGTTCGCTTGAGCAGAAGAT 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 AGATGGCAAAGAGGTGGACAAAGTTGTCGGAGCTGATAAAGGTTCGCTTGAGCAGAAGAT 1243
Query 1150 TGCACAGCACTCTTCTTCTAAGTAATGGTTTCTCTCTTC 1188
||||||||||||||||||||||||||| ||| |||||||
Sbjct 1244 TGCACAGCACTCTTCTTCTAAGTAATGTTTTATCTCTTC 1282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58333033290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5