BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479277
Length=1366
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17910.1 | Symbols: SURF1 | Surfeit locus 1 cytochrome c oxi... 2109 0.0
AT2G11983.1 | Symbols: | Pseudogene of AT3G17910; SURF1 (SURFE... 217 3e-55
> AT3G17910.1 | Symbols: SURF1 | Surfeit locus 1 cytochrome c oxidase
biogenesis protein | chr3:6133528-6136371 FORWARD LENGTH=1436
Length=1436
Score = 2109 bits (1142), Expect = 0.0
Identities = 1295/1370 (95%), Gaps = 5/1370 (0%)
Strand=Plus/Plus
Query 1 GTGGAGGCAAAAACCCTTTACCTCCGGGATCAAAATCTT--GGAGAGACGAAGATGGCGA 58
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 GTGGAGGCAAAAACCCTTTACCTCCGGGATCAAAATCTTGGGGAGAGACGAAGATGGCGA 60
Query 59 CATCGTTTTCCAAAATACTAACGAGATCGAACGCTCAGAGACACTGGTGCTCTACTACAA 118
| ||| |||||||||| ||||||||||||||| || ||||| ||||||||||||||||||
Sbjct 61 CCTCGCTTTCCAAAATCCTAACGAGATCGAACACTAAGAGATACTGGTGCTCTACTACAA 120
Query 119 CCAGTATATCTGCATCTCCTTCTATACCGAAACAATTCTGGTCAAGACACTTCTCCGCCG 178
| ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 121 CAAGTATCTCTGCCTCTCCTTCTTTACCGAAACAATTCTGGTCAAGACACTTCTCTGCCG 180
Query 179 TCGCTGACTCTTCCTCATCTAGCTCCGCCGCTCTTGGAAGCCAATCGAGTTCTTCTGCTC 238
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCGCTGACTCTTCCTCCTCTAGCTCCGCCGCTCTTGGAAGCCAATCGAGTTCTTCTGCTC 240
Query 239 CACCACAAGAGAATAAACGAGGTTCAAAGTGGTCACAATTGCTGCTATTCTTGCCTGGAG 298
|||| |||||||| |||||||| || ||||||||||||||| || | |||||||||||||
Sbjct 241 CACCTCAAGAGAACAAACGAGGGTCTAAGTGGTCACAATTGTTGTTGTTCTTGCCTGGAG 300
Query 299 CGATTACCTTCGGCCTCGGGTCATGGCAGATTGTCAGAAGAGAGGAAAAGTTCAAAACAC 358
|||||||||| || ||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 301 CGATTACCTTTGGTCTCGGGTCATGGCAGATCGTCAGGAGAGAGGAAAAGTTCAAAACAC 360
Query 359 TGGAGTATCAACAGCAACGGTTGAACATGGAACCAATGAAGCTAAATATAGACCATCCTC 418
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 361 TGGAGTATCAACAGCAACGGTTGAACATGGAACCAATAAAGCTAAATATAGACCATCCTC 420
Query 419 GTGATAAGAATCTTGATGCATTAGAATTTAGACGGGTTAGTTGCAAGGGTGTCTTTGACG 478
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTGATAAGAATCTCAATGCTTTAGAATTTAGACGGGTTAGTTGCAAGGGTGTCTTTGACG 480
Query 479 AGCAAAGGTCTATCTATTTGGGTCCACGGTCTAGGTCCATATCGGGAGTTACTGAAAATG 538
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 AGCAAAGGTCTATCTATTTGGGTCCACGGTCTAGGTCCATATCGGGAATTACTGAAAATG 540
Query 539 GATTCTATCTCATCACACCTCTAATGCCAATCCCTGGTGACCTGGATAGCATACAGTCGC 598
|||||| | ||||||||||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 541 GATTCTTTGTCATCACACCTCTAATGCCAATCCCCGGTGACCTGGATAGCATGCAATCGC 600
Query 599 CTATTCTGGTGAATCGTGGATGGGTTCCTCGAAGTTGGAGAGAGAAGTCACCAGAATCCA 658
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 601 CTATTCTGGTGAATCGTGGATGGGTTCCTCGAAGTTGGAGAGAGAAGTCACAAGAATCCG 660
Query 659 CAGAGGCTGACTTCGTTGCAAACCAGTCAACAAAAGCTAAATCACCCTCCGATGAACCAA 718
|||||||||| ||| ||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 661 CAGAGGCTGAGTTCATTGCAAACCAGTCAACAAAAGCTAAATCACCGTCCAATGAACCAA 720
Query 719 AGTCCTGGTGGAAATTTTGGTCTAAGACGCCAGTTATTACCAAGGAACATGTATCCGTGG 778
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||| | ||
Sbjct 721 AGTCCTGGTGGAAATTTTGGTCTAAGACGCCAGTGATTACCAAGGAACATATATCTGCGG 780
Query 779 TTAAGCCTGTAGAAGTTGTTGGTGTGATCAGGGGAGGAGAGAACCCAAGCATATTTGTTC 838
|||||||||||||||| ||||| || ||||||||||| |||||||| |||||||||||||
Sbjct 781 TTAAGCCTGTAGAAGTAGTTGGCGTAATCAGGGGAGGGGAGAACCCGAGCATATTTGTTC 840
Query 839 CATCCAATGATCCAAGTACCGGGCAGTGGTTCTATGTAGATGTTCCTGCGATGGCTCGAG 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CATCCAATGATCCAAGTACCGGGCAGTGGTTCTATGTAGATGTTCCTGCGATGGCTCGAG 900
Query 899 CCGTTGGCCTTCCTGAAAATACAGTCTACGTAGAGGACGTCCATGAACATGTAGATCGGA 958
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 901 CCGTTGGCCTTCCTGAAAACACAATCTACGTAGAGGACGTCCATGAACATGTAGATCGGA 960
Query 959 GTAGACCGTATCCTGTTCCCAAGGACATCAACACCTTGATCCGTAGTAAAGTCATGCCAC 1018
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GTAGACCGTATCCTGTTCCGAAGGACATCAACACCTTGATCCGTAGTAAAGTCATGCCAC 1020
Query 1019 AGGACCATCTCAACTACTCAATAACATGGTATTCTCTCTCGGCGGCTGTCACTTTCATGG 1078
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 AGGACCATCTGAACTACTCAATAACATGGTATTCTCTCTCGGCGGCTGTCACTTTCATGG 1080
Query 1079 CTTACAAGAGACTGAAGGCAAAGCCTGCCCGCAGATAAGCTCTCGCTGATCAAAGTCAAA 1138
| ||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||
Sbjct 1081 CATACAAGAGACTGAAGGCAAAGCCTGTCCGCAGATAAGCACTCGCTGATCAAAATCAAA 1140
Query 1139 TCTTATTCTTTTTGTCACTTGTCTGCTGAAGTAATAATTGCAATGGATAACGGGTTTTAG 1198
|| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1141 TCGTATTCTTTTTGTCACTTGTCTGCTGAAGTAATAATTGCAGTGGATAATTGGTTTTAG 1200
Query 1199 GTT-TAAACATTCATTaaaaaaaaGG-ACACAATGAAATCCTTACTGTTGTGATAACTTC 1256
||| ||||| ||||| || ||||||| ||||||| ||||||||| ||||||| ||||||
Sbjct 1201 GTTATAAACTTTCAT-AAGAAAAAGGGACACAATTAAATCCTTAATGTTGTGGTAACTTA 1259
Query 1257 ATAGAAATTTGTAGTTTTCTTTTTCTACGATGGAAGGAAAGTTCGAACTGGAAGCCATTT 1316
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1260 ATAGAAATTTGTAGTTTTCTTTTTCTACGATGGAAGGAAAGTTCGAAATGGAAGCCATTT 1319
Query 1317 GTAGGTAAAGAAGGTTGCAATGAATGCTTGTAGTCACCATTGTTCTTTCT 1366
|||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1320 GTAGGTAAAGAAGGTTGCAACGAATGCTTGTAATCACCATTGTTCTTTCT 1369
> AT2G11983.1 | Symbols: | Pseudogene of AT3G17910; SURF1 (SURFEIT
1) | chr2:4830686-4831244 FORWARD LENGTH=382
Length=382
Score = 217 bits (117), Expect = 3e-55
Identities = 164/186 (88%), Gaps = 5/186 (3%)
Strand=Plus/Plus
Query 402 AAATATAGACCATCCTCGTGATAAGAATCTTGATGCATTAGAATTTAGACGGGTTAGTTG 461
||| |||||| |||||| |||||||| | ||| ||||||||| |||||||||||| ||||
Sbjct 199 AAA-ATAGACTATCCTCCTGATAAGACT-TTGGTGCATTAGAGTTTAGACGGGTTGGTTG 256
Query 462 CAAGGGTGTCTTTGACGAGCAAAGGTCTATCTATTTGGGTCCACGGTCTAGGTCCATATC 521
|||| |||| |||||||| |||| | ||||||||||||||||||||||||||||||||
Sbjct 257 CAAGAGTGTGTTTGACGATCAAATAT-TATCTATTTGGGTCCACGGTCTAGGTCCATATT 315
Query 522 GGGAGTTACTGAAAATGGATTCTATC-TCATCACACCTCTAATGCCAATCCCTGGTGACC 580
|||||| | |||||||||||| || | |||||| ||||||||||||||||| ||||||||
Sbjct 316 GGGAGTGATTGAAAATGGATTTTA-CGTCATCAAACCTCTAATGCCAATCCTTGGTGACC 374
Query 581 TGGATA 586
||||||
Sbjct 375 TGGATA 380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67268730300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5