BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479281
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17940.1 | Symbols: | Galactose mutarotase-like superfamily... 1722 0.0
> AT3G17940.1 | Symbols: | Galactose mutarotase-like superfamily
protein | chr3:6143519-6145337 REVERSE LENGTH=1307
Length=1307
Score = 1722 bits (932), Expect = 0.0
Identities = 1137/1230 (92%), Gaps = 38/1230 (3%)
Strand=Plus/Plus
Query 1 TCTAATGGCGGATCAGAGCAAGAACACTCCACAGATCTTCGAGCTCAACAATGGCACCAT 60
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 90 TCTAATGGCGGATCAGAGCAAAAACACTCCAGAGATCTTCGAGCTCAACAATGGCACCAT 149
Query 61 GCAGGTCAAGATCTCAAACTACGGCACCACCATCACCTCCTTGTCTGTTCCTGACAAGAA 120
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 150 GCAGGTCAAGATCTCAAACTACGGCACCACCATCACCTCTTTGTCTGTTCCCGACAAGAA 209
Query 121 CGGGAAATTGGCTGATGTAGTTCTCGGATTCGACTCGGTGGATCCATATGTGAAAGGGCT 180
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 CGGGAAACTGGGGGATGTAGTTCTCGGATTCGACTCGGTGGATCCATATGTGAAAGGGCT 269
Query 181 TGCACCATACTTTGGGTGCATAGTTGGTCGTGTGGCAAATCGGATCAAAGAGGGAAAATT 240
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 270 TGCACCATACTTTGGGTGCATTGTTGGTCGTGTGGCAAATCGGATCAAGGAGGGAAAATT 329
Query 241 TAGTCTCAATGGAGTTAACTACACTTTGCCTATCAACAAGCCTCCCAATAGCCTCCACGG 300
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 330 CAGTCTCAATGGAGTTAACTACACTTTGCCTATCAACAAGCCTCCTAATAGTCTCCACGG 389
Query 301 TGGTAACAAGGGTTTTGATAAGAAGATATGGGAAGTTGCAGGGCACAAGAAAGACGGCGA 360
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 390 TGGTAACAAGGGTTTCGATAAGAAGATATGGGAAGTTGCAGGGCACAAGAGAGACGGCGA 449
Query 361 AAAACCTTTCATTACTTTCAAATATCACAGTGCTGATGGGGAAGAAGGTTACCCTGGTGC 420
|||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 450 AAAACCTTTCATCACTTTCAAATATCACAGTGCCGATGGAGAAGAAGGTTACCCTGGTGC 509
Query 421 GGTTTCTGTCACGGCGACATATACTCTCACGTCAGCCACGACAATGAGACTTGACATGGA 480
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 510 GGTTTCTGTCACGGCGACATACACTCTCACGTCAGCCACGACAATGAGACTTGACATGGA 569
Query 481 AGCTGTTCCAGAGAACAAAGACACTCCAATCAGCTTAGCTCAGCATACATATTGGAACTT 540
||||||||||||||||||||| ||||| |||| ||||||||| |||||||| ||||||||
Sbjct 570 AGCTGTTCCAGAGAACAAAGATACTCCCATCAACTTAGCTCAACATACATACTGGAACTT 629
Query 541 GGCGGGTCATGACTCAGGAAACATTCTGGACCATAAGATTCAGATTTGGGGGTCTCATAT 600
|| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 630 AGCAGGTCATGACTCAGGAAACATTCTAGACCATAAGATTCAGATATGGGGGTCTCATAT 689
Query 601 CACGCCGGTTGACGAATACACAGTTCCTACAGGGGAGATCTTGCCGGTAAAGGGAACTCC 660
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 690 CACGCCGGTTGACGAATACACAGTTCCTACAGGAGAGATCTTGCCTGTAAAGGGAACTCC 749
Query 661 TTTCGATTTCACAGAGGAGAAACGGATAGGCGAGTCTATTGGAGAGGTTGGTATCGGATA 720
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 750 TTTCGATTTCACTGAGGAGAAGCGGATAGGCGAGTCTATTGGAGAGGTTGGTATCGGATA 809
Query 721 TGATCATAACTACGTATTGGACTGTCCTGATCAAGAGAAGGAGGGGCTGAAACACGCAGC 780
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 CGATCATAACTACGTGTTGGACTGTCCTGATCAAGAGAAGGAGGGGCTGAAACACGCAGC 869
Query 781 AAAGCTCAGCAATGGTGCGAGCTCAAGGGTACTGAACTTGTGGACCAATGTGCCGGGAAT 840
|||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 870 GAAGCTCAGTGATGCTGCTAGCTCAAGGGTACTGAACTTGTGGACCAATGTGCCGGGAAT 929
Query 841 GCAGTTTTATACCGGGAACTATGTGAATGGAGTGGTTGGGAAAGGGAATGCAGTTTACGG 900
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 930 GCAGTTTTATACCGGGAACTATGTGAATGGAGTGGTTGGGAAAGGGAATGCGGTTTACGG 989
Query 901 GAAACATGCGGGTGTGTGCCTTGAGACACAGGGATTCCCGAACGCGATTAACCAGTCGAA 960
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 990 GAAACATGCGGGTGTGTGCCTTGAGACGCAGGGATTCCCGAACGCGATTAACCAGTCGAA 1049
Query 961 TTTCCCGTCTGTTGTGGTTAAAGCTGGTGAGAAGTACCAGCACACAATGCTGTTTGAGTT 1020
||||||||||||||||||||| ||||||||||||||| | ||||| ||||||||||||||
Sbjct 1050 TTTCCCGTCTGTTGTGGTTAAGGCTGGTGAGAAGTACAATCACACGATGCTGTTTGAGTT 1109
Query 1021 TTCAGCTTGAGTGATGGGGTTGGTATTTAGATGGACGTTT-AGGTGTTAGATGATGGGAA 1079
|||||||||||| | | || |||||||||||| |||||||||||||||||||
Sbjct 1110 TTCAGCTTGAGT--T----T----AT--AGATGGACGTTTTAGGTGTTAGATGATGGGAA 1157
Query 1080 TAAAGGGCCGGTTCATTTTGATTCA-T----TG-A----GAGTGATTTTAATTTCATCT- 1128
|||||||||||||||||| |||||| | || | ||||||||||||||| ||||
Sbjct 1158 TAAAGGGCCGGTTCATTT-GATTCACTGGGCTGGAAAAAGAGTGATTTTAATTTTATCTC 1216
Query 1129 TTTGATCGTTG--TCGTGGAG--AA--T----A-ATAA-ATTAAAGTTACTTTATTTTTT 1176
|||| | | | | | || | | || | |||||||||||||||||||||
Sbjct 1217 TTTGGGGGA-GAATAATAAAACCAAACTGTTTACATTATATTAAAGTTACTTTATTTTTT 1275
Query 1177 CATATCTTCTAAACATTTGGCCCATTTGTG 1206
||||||||||||||||||||||||||||||
Sbjct 1276 CATATCTTCTAAACATTTGGCCCATTTGTG 1305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59236643100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5