BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479285
Length=973
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17980.1 | Symbols: | Calcium-dependent lipid-binding (CaLB... 1378 0.0
AT1G48590.2 | Symbols: | Calcium-dependent lipid-binding (CaLB... 366 2e-100
> AT3G17980.1 | Symbols: | Calcium-dependent lipid-binding (CaLB
domain) family protein | chr3:6152121-6153434 FORWARD LENGTH=1072
Length=1072
Score = 1378 bits (746), Expect = 0.0
Identities = 920/997 (92%), Gaps = 39/997 (4%)
Strand=Plus/Plus
Query 1 AGAAACCAAAGCGACCTGCCCTAATCTTTAGCGATGATAGTTTAAACGGAACGAAACT-T 59
||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||| | |
Sbjct 53 AGAAACCAAAGAGACCTGCCCTAATATTTAGCGATGATAGTTTGAACGGAACGAAA-TCT 111
Query 60 GACG-AAGAAACTAAAGAGACACATTTGAATCATCTTCATagaaaataa-aaatataaaa 117
|||| |||||||||||||||| | ||||||| ||||||| | ||| ||| | ||||
Sbjct 112 GACGAAAGAAACTAAAGAGAC-C-TTTGAATTATCTTCA-CGGCGTTAACAAA-AAAAAA 167
Query 118 ---tcgtagaaagtgag--a--aag----aa--a-g-a-attaaaaaaggaaatGACAAC 161
| |||||||||||| | ||| || | | | ||||| |||||||||||||||
Sbjct 168 GGGTTGTAGAAAGTGAGTAAGGAAGAAATAATCAGGAACATTAATAAAGGAAATGACAAC 227
Query 162 GGCGTGTCCGGCGAGGACAAGCTCACTAATGGACGATCTCTTGGGCCTCCTTAGAATCCG 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 GGCGTGTCCGGCGAGGACAAGCTCACTAATGGACGATCTCTTGGGCCTCCTTAGAATCCG 287
Query 222 CATCAAACGTGGCGTCAATTTAGCCGTCCGTGACATCAGTAGCAGCGATCCTTACGTCGT 281
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 TATCAAACGTGGCGTCAATTTAGCCGTCCGTGACATCAGTAGCAGCGATCCTTACGTCGT 347
Query 282 CGTCAAAATGGGCAAACAGAAATTGAAGACTCGTGTCATTAACAAAGATGTAAATCCAGA 341
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 348 CGTCAAGATGGGCAAACAGAAATTGAAGACTCGTGTCATTAACAAAGATGTTAATCCAGA 407
Query 342 ATGGAATGAAGATTTGACTCTCTCCGTCACAGACTCCAATCTTACCGTCCTCTTGACGGT 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 ATGGAATGAAGATTTGACTCTCTCCGTCACAGACTCCAATCTTACCGTCCTCTTGACGGT 467
Query 402 GTACGATCACGACATGTTTAGCAAAGACGATAAGATGGGTGATGCTGAGTTCGAGATAAA 461
||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 468 GTATGATCACGACATGTTTAGCAAAGACGACAAGATGGGCGATGCTGAGTTCGAGATAAA 527
Query 462 GCCGTATATTGAGGCTTTGAGGATGCAGCTTGATGGACTTCCTAGTGGAACCATTGTGAC 521
||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 528 GCCCTATATTGAGGCTTTGAGGATGCAACTCGATGGACTTCCTAGTGGAACCATTGTGAC 587
Query 522 CACGGTTAAGCCAAGTCGTCGCAACTGTCTTGCCGAGGAGTCACGTGTCACATGGGTCGA 581
||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 588 CACGGTTAAGCCAAGTCGTCGTAACTGTCTAGCCGAGGAGTCACGTGTCACCTGGGTCGA 647
Query 582 CGGCAAGCTCGTCCAGGATCTCGTTCTCAGATTGCGACATGTGGAATGCGGAGAGGTCGA 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 CGGCAAGCTCGTCCAGGATCTCGTTCTCAGATTGCGACATGTGGAATGCGGAGAGGTCGA 707
Query 642 GGCTCAACTTCAATGGATTGATCTCCCTGGCTCCAAGGGTCTATGAATCttttttctttt 701
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 708 GGCTCAGCTTCAATGGATTGACCTCCCTGGCTCCAAGGGTCTATGAATCTTTTTTCTTTT 767
Query 702 tttCTTATTCACCGTTACTTTGAGTTGTTTTCTTTCAAATTGAACTAAACCAAGTAACAG 761
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 ---CTTATTTACCGTTACTTTGAGTTGTTTTCTTTCAAATTGAACTAAACCAAGTAACAG 824
Query 762 CATGGaaaaaaaaaCAAGTA-TTTCAATCTTGAAGGATATAGCTAATGAACTATAAACGC 820
|||||||||||| |||||| ||||||||||||||||||||| | |||||| |||| |
Sbjct 825 CATGGAAAAAAA--CAAGTAATTTCAATCTTGAAGGATATAG-T---GAACTAGAAACAC 878
Query 821 GTATTAATCCATGGGAATATAAGGATTAAGAACATTGAGGGAAGTTTTGTTCCCATATGG 880
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 879 GTATTAATCCATGGAAATATAAGGATTAAGAACGTTGAGGGAAGTTTTGTTCCCATATGG 938
Query 881 TGATCGAGTCCAAGTCGAGTGAGTCATGGTGGGCATGTAAATGCGGTGTATTGTTGATGT 940
|||||||||||||||||||| || |||||| ||||||||| ||||||||||||||||
Sbjct 939 TGATCGAGTCCAAGTCGAGTC-GTGGTGGTGGATATGTAAATGTGGTGTATTGTTGATGT 997
Query 941 GTAT--AT-TT-GGGCTAGCTATGCCTTAAAGAAGGC 973
|||| || || ||||||||||||||||||| |||||
Sbjct 998 GTATGTATATTTGGGCTAGCTATGCCTTAAATAAGGC 1034
> AT1G48590.2 | Symbols: | Calcium-dependent lipid-binding (CaLB
domain) family protein | chr1:17962839-17964429 FORWARD LENGTH=805
Length=805
Score = 366 bits (198), Expect = 2e-100
Identities = 396/489 (81%), Gaps = 24/489 (5%)
Strand=Plus/Plus
Query 220 CGCATCAAACGTGGCGTCAATTTAGCCGTCCGTGA-CATCAGTAGCAGCGATCCTTACGT 278
||||||||||| |||||||| | || |||||||| | ||| || || |||||||||||
Sbjct 186 CGCATCAAACGCGGCGTCAACCTCGCAGTCCGTGATC-TCAACAGTAGTGATCCTTACGT 244
Query 279 CGTCGTCAAAATGGGC-AAACAGAAATTGAAGACTCGTGTCATTAACAAAGATGTAAATC 337
||||||||||| ||| |||||||||||||||||||| || ||| ||||| |||||||||
Sbjct 245 TGTCGTCAAAAT-GGCAAAACAGAAATTGAAGACTCGAGTTATTTACAAAAATGTAAATC 303
Query 338 CAGAATGGAATGAAGATTTGACTCTCTCCGTCACAGACTCCAATCTTACCGTCCTCTTGA 397
| || ||||||||||| ||||||||||| || ||||| |||||||||||||||||||||
Sbjct 304 CTGAGTGGAATGAAGACTTGACTCTCTCAGTTTCAGACCCCAATCTTACCGTCCTCTTGA 363
Query 398 CGGTGTACGATCACGACATGTTTAGCAAAGACGATAAGATGGGTGATGCTGAGTTCGAGA 457
||||||| ||| | |||| ||| | ||||||||| |||||||| ||||| || |||| ||
Sbjct 364 CGGTGTATGATTATGACACGTTCACCAAAGACGACAAGATGGGAGATGCAGAATTCGGGA 423
Query 458 TAAAGCCGTATA-TTGAGGCTTTGAGGATGCAGCTTG-ATGGA-CTTCC-TAGTGGAACC 513
| ||||||| | || | || |||| |||||| ||| ||| | || || | ||| |||
Sbjct 424 TTAAGCCGT-TCGTTAATGCGTTGAAGATGCA-CTTACATG-ATCTCCCATC-TGGGACC 479
Query 514 ATTGTGACCACGGTTAAGCCAAGTCGTCG-CAACTGTCTTGCCGAGGAGTCACGTGTCAC 572
|| || |||||||| |||| || || || |||||| || ||||||||||| || || |
Sbjct 480 ATCGTAACCACGGTCCAGCCTAGCCG-CGACAACTGCCTAGCCGAGGAGTCTCGGGTTAT 538
Query 573 ATGGGTC-GACGGCAAGCTCGTCCAGGATCTCGTTCTCAGATTGCGACATGTGGAATGCG 631
|||| || || || |||||||| || ||| | ||||| || || ||||||| ||||| |
Sbjct 539 ATGG-TCTGATGGTAAGCTCGTTCAAGATATAGTTCTTAGGCTGAGACATGTCGAATGTG 597
Query 632 GAGAGGTCGAGGCTCAACTTCAATGGATTGATCT-CCCTGGCTCCAAGGGTCTATGAATC 690
| ||||| |||||||||||||||||||||||||| ||| || |||||||||||| |
Sbjct 598 GTGAGGTTGAGGCTCAACTTCAATGGATTGATCTTCCC-GGA---AAGGGTCTATGA-T- 651
Query 691 tt-ttttct 698
|| ||||||
Sbjct 652 TTGTTTTCT 660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47621971356
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5