BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479288
Length=1134
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18010.1 | Symbols: WOX1 | WUSCHEL related homeobox 1 | chr3... 1703 0.0
> AT3G18010.1 | Symbols: WOX1 | WUSCHEL related homeobox 1 | chr3:6161137-6163272
REVERSE LENGTH=1160
Length=1160
Score = 1703 bits (922), Expect = 0.0
Identities = 1076/1148 (94%), Gaps = 20/1148 (2%)
Strand=Plus/Plus
Query 1 TTTACTTGC--TATCGCTGTCTCTCTCTCCCTTCTCCTCTATAAACATACATATAAATTA 58
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 19 TTTACTTGCTATATCGCTG--TCTCTCTCCCTTCTCCTCTATAAACATACATATAAATTA 76
Query 59 AGT--ACACCAAAATGTGGACGATGGGTTACAACGAAGGGGGCGGAGATTCCTTCAACGG 116
||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 77 AGTACACACCAAAATGTGGACGATGGGTTACAACGAAGGAGGCGCAGATTCCTTCAACGG 136
Query 117 AGGAAGAAAGCTTCGTCCTCTCATCCCACGCCTCTCATCTTGTCCCACCGCCGCCGTAAA 176
|||||||||||||||||||||||||||||| ||| | ||||| |||||||||||||||||
Sbjct 137 AGGAAGAAAGCTTCGTCCTCTCATCCCACGTCTCACTTCTTGCCCCACCGCCGCCGTAAA 196
Query 177 CACCAACTCCGACCACCGCTTTAATATGGCAGTGGTGACGATGACGGCGGAGCAGAACAA 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 CACCAACTCCGACCACCGCTTTAATATGGCAGTGGTGACGATGACGGCGGAGCAGAACAA 256
Query 237 GAGGGAGCTGATGATGCTAAACTCAGAACCTCAACATCCACCGGTAATGGTGAGCTCACG 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 GAGGGAGCTGATGATGCTAAACTCAGAACCTCAACATCCACCGGTAATGGTGAGCTCACG 316
Query 297 GTGGAATCCGACGCCAGATCAGTTAAGGGTTCTTGAAGAGCTTTACCGACAAGGAACTAG 356
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 GTGGAATCCGACACCAGATCAGTTAAGGGTTCTTGAAGAGCTTTACCGACAAGGAACTAG 376
Query 357 AACTCCTTCTGCCGACCACATCCAACAAATCACGGCACAACTACGACGGTACGGGAAGAT 416
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 377 AACTCCTTCTGCCGACCACATCCAACAAATCACCGCACAGCTACGACGGTACGGGAAGAT 436
Query 417 AGAAGGCAAAAACGTTTTCTATTGGTTCCAAAACCACAAAGCCCGAGAACGCCAGAAACG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 AGAAGGCAAAAACGTTTTCTATTGGTTCCAAAACCACAAAGCCCGAGAACGCCAGAAACG 496
Query 477 ACGACGACAGATGGAAGCTGGTCATGAAGAATCGGTCTTTTCAACAACAAGTCTTGTCTC 536
||| ||||| |||||| |||| || |||||| ||||| |||||||| |||||||||||||
Sbjct 497 ACGGCGACAAATGGAAACTGGCCACGAAGAAACGGTCCTTTCAACAGCAAGTCTTGTCTC 556
Query 537 AAACCACGGATTCGACAAGAAAGATCCGTC-AGGTTACAAGGTTGAACAG-TCCAAGAAC 594
||||||||||||||||||||||||||| || ||||||||||||||||||| || ||||||
Sbjct 557 AAACCACGGATTCGACAAGAAAGATCC-TCCAGGTTACAAGGTTGAACAGGTC-AAGAAC 614
Query 595 TGGATATGTTCGATCGGATGCGACACACAACCAGAGAAACCTTCCCATGATCATCATCTG 654
|||||||||||| ||||||||||||| ||||||||||||||||||| |||| ||||||||
Sbjct 615 TGGATATGTTCGGTCGGATGCGACACGCAACCAGAGAAACCTTCCCGTGATTATCATCTG 674
Query 655 GAGGAGCCAGCGAACATACGGGTCGAGCGCAATGGTCGTTGTGGAGGAGACGAGAGACGA 714
|||||||||||||| |||||||| |||| ||||| |||||||||||||||||||||||||
Sbjct 675 GAGGAGCCAGCGAATATACGGGTGGAGCACAATGCTCGTTGTGGAGGAGACGAGAGACGA 734
Query 715 AGCGTTTTAGGGATAAACGCCACGTGGCAGATGATGCAGTTGCCACCTGGTTTCTACCCT 774
||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 735 AGCTTTTTAGGGATAAACACCACGTGGCAGATGATGCAGTTGCCACCTAGTTTCTACTCT 794
Query 775 TCTCCACATCATCATCATCAACGTAACCTCATTCTCAATTCAACTACTGTTTCCTCCAAC 834
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 795 TCTTCACATCATCATCATCAACGTAACCTCATTCTCAATTCACCTACTGTTTCCTCCAAC 854
Query 835 ATGTCCAATAGCAACATTACTGTTTCTG-TTGCTAAAGATACGGTCACGATTTCACCTGT 893
|||||||| ||||||| | |||| |||| || ||||||||||||||||| ||||||||||
Sbjct 855 ATGTCCAACAGCAACAATGCTGTCTCTGCTT-CTAAAGATACGGTCACGGTTTCACCTGT 913
Query 894 ATTTCTACGTACCAGAGAAGCAGCGAACACAGAGACTTGTCGTCGAAATTGTGATGATAA 953
|||||||||||| ||||||||| |||||||||||||||||| ||||||| ||||||||||
Sbjct 914 ATTTCTACGTACGAGAGAAGCAACGAACACAGAGACTTGTCATCGAAATGGTGATGATAA 973
Query 954 TAAAGATCAAGAAC-----GA-GATTGCTCTAACGGTGAACCGGATCATCAAGAACAGAC 1007
|||||||||||||| || |||||||| ||||||||| ||||||||||||||||||
Sbjct 974 TAAAGATCAAGAACAACATGAAGATTGCTCCAACGGTGAATTGGATCATCAAGAACAGAC 1033
Query 1008 ACTTGAGCTGTTTCCACTGAGAAAAGAAGGGTTTTGTAGCGATGGTGAGAAAGAGAAGGA 1067
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1034 ACTTGAGCTGTTTCCACTGAGAAAAGAAGGGTTTTGTAGCGATGGTGAGAAAGACAAGAA 1093
Query 1068 GATCAATAGTATTCACTGTTTCTATGAGTTTCTGCCTAT-GAAGAACTAAACATAATTGA 1126
|| | | | |||||||||||||||||||||||||| || |||||||||||| |||||||
Sbjct 1094 CATTAGTGGCATTCACTGTTTCTATGAGTTTCTGCC-ATTGAAGAACTAAACCTAATTGA 1152
Query 1127 ATTCTTTC 1134
| ||||||
Sbjct 1153 AGTCTTTC 1160
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55622203860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5