BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479290
Length=919
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18030.1 | Symbols: ATHAL3A, HAL3A, HAL3, ATHAL3 | HAL3-like... 1312 0.0
> AT3G18030.1 | Symbols: ATHAL3A, HAL3A, HAL3, ATHAL3 | HAL3-like
protein A | chr3:6167640-6168948 REVERSE LENGTH=1192
Length=1192
Score = 1312 bits (710), Expect = 0.0
Identities = 881/956 (92%), Gaps = 41/956 (4%)
Strand=Plus/Plus
Query 1 TCGACCAGATCAATTTTTCGGTTAGGGTTCCTCGCCGAACCA-T---T-C---GGTGGAT 52
|||||||||||||||||||||||||||||| ||||||||||| | | | | | |||
Sbjct 239 TCGACCAGATCAATTTTTCGGTTAGGGTTCTTCGCCGAACCATTGGCTACTTTGCTAGAT 298
Query 53 CTCTGAAGTTGT-GAAGCAGCTATGGAGAATGGGAAAAGAGACAGACAAGAGATGGAAGT 111
|||||||| ||| ||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 299 CTCTGAAGGTGTAAAAG-AGCTATGGAGAATGGGAAAAGAGACAGACAAGACATGGAAGT 357
Query 112 GAATACCACACCGAGAAAGCCTCGTGTACTACTTGCTGCAAGTGGAAGTGTCGCTGCTAT 171
||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 358 GAATACCACACCGAGGAAGCCTCGTGTACTACTCGCTGCAAGTGGAAGCGTCGCTGCTAT 417
Query 172 CAAATTCGGCAATCTCTGCCATTGTTTCACCGAATGGGCAGAAGTGAGAGCCGTCGTTTC 231
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
Sbjct 418 CAAATTCGGCAATCTCTGCCATTGCTTCACCGAATGGGCAGAAGTCAGAGCCGTCGTTAC 477
Query 232 GAAATCATCTCTTCATTTCCTCGATAAACTCTCTCTCCCACAAGAAGTGACTCTGTATAC 291
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GAAATCATCTCTACATTTCCTCGATAAACTCTCTCTCCCACAAGAAGTGACTCTGTATAC 537
Query 292 TGATGAAGATGAATGGTCAAGCTGGAACAAGATCGGTGATCCTGTCCTTCACATCGAGCT 351
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TGATGAAGATGAATGGTCTAGCTGGAACAAGATCGGTGATCCTGTCCTTCACATCGAGCT 597
Query 352 TAGACGTTGGGCTGATGTTTTAGTCATTGCTCCTTTGTCTGCTAACA-CTCTAGGCAAGA 410
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 598 TAGACGTTGGGCTGATGTTTTAGTCATTGCTCCTTTGTCTGCTAACACCT-TAGGCAAGA 656
Query 411 TTGCTGGTGGGCTTTGTGATAATCTTCTGACTTGCATTATACGAGCTTGGGACTATAGCA 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 657 TTGCTGGTGGGCTTTGTGATAATCTTCTGACTTGCATTATACGAGCTTGGGACTATACCA 716
Query 471 AACCACTGTTTGTTGCACCAGCGATGAATACTTTGATGTGGAACAATCCTTTCACTGAAA 530
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 717 AACCACTGTTTGTTGCTCCAGCTATGAATACTTTGATGTGGAACAATCCTTTCACTGAAA 776
Query 531 GGCATCTTTTGTCGCTTGATGAACTGGGAATCACACTTATTCCTCCTATCAAGAAGAGA- 589
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 GGCATCTTTTGTCTCTTGATGAACTGGGAATCACACTTATTCCTCCTATCAAGAAGAGAC 836
Query 590 TTGGCCTGTGGAGACTATGGTAATGGCGCTATGGCTGAGCCCTCTCTTATCTATTCCACT 649
|| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 837 TT-GCCTGTGGAGACTACGGTAATGGAGCTATGGCTGAGCCCTCTCTTATCTATTCCACT 895
Query 650 GTCAGACTCTTCTGGGAGTCTCAGGCTCATCAGCAAAGCGGTGGAACTAGTTAAA-CCAT 708
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 896 GTCAGACTCTTCTGGGAGTCTCAGGCTCATCAGCAAACCGGTGGAACTAGTTAAAACCAT 955
Query 709 GAT-----------GCATTTTGTGGAAA-TCATCTG----C--T-T-TTAGATAATAG-A 747
||| |||||||||||||| ||||||| | | | ||||||||||| |
Sbjct 956 GATTTCCACAACATGCATTTTGTGGAAAATCATCTGTTTTCACTATCTTAGATAATAGTA 1015
Query 748 T-TTTTATCAATCTGTATGCTTTTCTTGTACATCTTTAAATGGCTGTCTGGATTCATGTG 806
|||||||| ||||| |||||||||||||||||| |||| |||||||||||| ||||
Sbjct 1016 GATTTTATCAGTCTGTTTGCTTTTCTTGTACATCTCAAAATAGCTGTCTGGATTGATGTA 1075
Query 807 TCTGGAGAACCATTTGCACTA---GCTCCACTCTGTTGCTGTAGAAATGTTTATGTTTCC 863
||||||| ||||||||||||| ||||||||||||| |||||||||||| ||||||||
Sbjct 1076 TCTGGAGGACCATTTGCACTACTAGCTCCACTCTGTTTCTGTAGAAATGTCTATGTTTCT 1135
Query 864 TTTCCTCGCTCTTAAATGTTGTCTTTCAATTCTGCTTATAGCTCACTGAACTTTTG 919
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1136 TTTCCTCGCTCTTAAATGTTGTCTT-CAATTCTGCTAATAGCTCACTGAACTTTTG 1190
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44909327418
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5