BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479290 Length=919 Score E Sequences producing significant alignments: (Bits) Value AT3G18030.1 | Symbols: ATHAL3A, HAL3A, HAL3, ATHAL3 | HAL3-like... 1312 0.0 > AT3G18030.1 | Symbols: ATHAL3A, HAL3A, HAL3, ATHAL3 | HAL3-like protein A | chr3:6167640-6168948 REVERSE LENGTH=1192 Length=1192 Score = 1312 bits (710), Expect = 0.0 Identities = 881/956 (92%), Gaps = 41/956 (4%) Strand=Plus/Plus Query 1 TCGACCAGATCAATTTTTCGGTTAGGGTTCCTCGCCGAACCA-T---T-C---GGTGGAT 52 |||||||||||||||||||||||||||||| ||||||||||| | | | | | ||| Sbjct 239 TCGACCAGATCAATTTTTCGGTTAGGGTTCTTCGCCGAACCATTGGCTACTTTGCTAGAT 298 Query 53 CTCTGAAGTTGT-GAAGCAGCTATGGAGAATGGGAAAAGAGACAGACAAGAGATGGAAGT 111 |||||||| ||| ||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct 299 CTCTGAAGGTGTAAAAG-AGCTATGGAGAATGGGAAAAGAGACAGACAAGACATGGAAGT 357 Query 112 GAATACCACACCGAGAAAGCCTCGTGTACTACTTGCTGCAAGTGGAAGTGTCGCTGCTAT 171 ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 358 GAATACCACACCGAGGAAGCCTCGTGTACTACTCGCTGCAAGTGGAAGCGTCGCTGCTAT 417 Query 172 CAAATTCGGCAATCTCTGCCATTGTTTCACCGAATGGGCAGAAGTGAGAGCCGTCGTTTC 231 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| | Sbjct 418 CAAATTCGGCAATCTCTGCCATTGCTTCACCGAATGGGCAGAAGTCAGAGCCGTCGTTAC 477 Query 232 GAAATCATCTCTTCATTTCCTCGATAAACTCTCTCTCCCACAAGAAGTGACTCTGTATAC 291 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 GAAATCATCTCTACATTTCCTCGATAAACTCTCTCTCCCACAAGAAGTGACTCTGTATAC 537 Query 292 TGATGAAGATGAATGGTCAAGCTGGAACAAGATCGGTGATCCTGTCCTTCACATCGAGCT 351 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 538 TGATGAAGATGAATGGTCTAGCTGGAACAAGATCGGTGATCCTGTCCTTCACATCGAGCT 597 Query 352 TAGACGTTGGGCTGATGTTTTAGTCATTGCTCCTTTGTCTGCTAACA-CTCTAGGCAAGA 410 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 598 TAGACGTTGGGCTGATGTTTTAGTCATTGCTCCTTTGTCTGCTAACACCT-TAGGCAAGA 656 Query 411 TTGCTGGTGGGCTTTGTGATAATCTTCTGACTTGCATTATACGAGCTTGGGACTATAGCA 470 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 657 TTGCTGGTGGGCTTTGTGATAATCTTCTGACTTGCATTATACGAGCTTGGGACTATACCA 716 Query 471 AACCACTGTTTGTTGCACCAGCGATGAATACTTTGATGTGGAACAATCCTTTCACTGAAA 530 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 717 AACCACTGTTTGTTGCTCCAGCTATGAATACTTTGATGTGGAACAATCCTTTCACTGAAA 776 Query 531 GGCATCTTTTGTCGCTTGATGAACTGGGAATCACACTTATTCCTCCTATCAAGAAGAGA- 589 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 777 GGCATCTTTTGTCTCTTGATGAACTGGGAATCACACTTATTCCTCCTATCAAGAAGAGAC 836 Query 590 TTGGCCTGTGGAGACTATGGTAATGGCGCTATGGCTGAGCCCTCTCTTATCTATTCCACT 649 || |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 837 TT-GCCTGTGGAGACTACGGTAATGGAGCTATGGCTGAGCCCTCTCTTATCTATTCCACT 895 Query 650 GTCAGACTCTTCTGGGAGTCTCAGGCTCATCAGCAAAGCGGTGGAACTAGTTAAA-CCAT 708 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 896 GTCAGACTCTTCTGGGAGTCTCAGGCTCATCAGCAAACCGGTGGAACTAGTTAAAACCAT 955 Query 709 GAT-----------GCATTTTGTGGAAA-TCATCTG----C--T-T-TTAGATAATAG-A 747 ||| |||||||||||||| ||||||| | | | ||||||||||| | Sbjct 956 GATTTCCACAACATGCATTTTGTGGAAAATCATCTGTTTTCACTATCTTAGATAATAGTA 1015 Query 748 T-TTTTATCAATCTGTATGCTTTTCTTGTACATCTTTAAATGGCTGTCTGGATTCATGTG 806 |||||||| ||||| |||||||||||||||||| |||| |||||||||||| |||| Sbjct 1016 GATTTTATCAGTCTGTTTGCTTTTCTTGTACATCTCAAAATAGCTGTCTGGATTGATGTA 1075 Query 807 TCTGGAGAACCATTTGCACTA---GCTCCACTCTGTTGCTGTAGAAATGTTTATGTTTCC 863 ||||||| ||||||||||||| ||||||||||||| |||||||||||| |||||||| Sbjct 1076 TCTGGAGGACCATTTGCACTACTAGCTCCACTCTGTTTCTGTAGAAATGTCTATGTTTCT 1135 Query 864 TTTCCTCGCTCTTAAATGTTGTCTTTCAATTCTGCTTATAGCTCACTGAACTTTTG 919 ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| Sbjct 1136 TTTCCTCGCTCTTAAATGTTGTCTT-CAATTCTGCTAATAGCTCACTGAACTTTTG 1190 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44909327418 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5