BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479291
Length=1875
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18035.1 | Symbols: HON4 | winged-helix DNA-binding transcri... 2109 0.0
> AT3G18035.1 | Symbols: HON4 | winged-helix DNA-binding transcription
factor family protein | chr3:6169090-6171724 REVERSE
LENGTH=1903
Length=1903
Score = 2109 bits (1142), Expect = 0.0
Identities = 1703/1950 (87%), Gaps = 133/1950 (7%)
Strand=Plus/Plus
Query 2 AAAAATCAAAAGAGCTCACAGAGCAAAACCaaaaaaaaaaaaag-aaaaaaaaCCCTAAA 60
||||||||||||||||| |||||| ||| ||| |||||||||| |||||||||||||||
Sbjct 11 AAAAATCAAAAGAGCTCTCAGAGC-AAA--AAACAAAAAAAAAGAAAAAAAAACCCTAAA 67
Query 61 TCTAAATCTCACCTTCCTCCTCTG---ttttttttttt-tt-ttttcattttttttACTG 115
||||||||||||||||| |||||| ||||||||||| || |||| ||||||||||||
Sbjct 68 TCTAAATCTCACCTTCCACCTCTGTCTTTTTTTTTTTTGTTCTTTTTTTTTTTTTTACTG 127
Query 116 ---------TTCTC--T--T-TG-------CT--CATCCATGGATCCATCTCTTGGTGAT 152
||||| | | || || ||||||||||||||||||||||||||
Sbjct 128 TATCTTCTCTTCTCTTTGCTCTGCAAAAATCTCACATCCATGGATCCATCTCTTGGTGAT 187
Query 153 CCTCATCATCCTCCTCAGTTCACCCCTTTCCCTTC-TTTCCCCACCTCCAACCACTTCGT 211
||||||||||||||||||||||||||||| || || ||| ||||||||| | | ||
Sbjct 188 CCTCATCATCCTCCTCAGTTCACCCCTTTTCC-TCATTTTCCCACCTCC-A--A--TC-- 239
Query 212 CTCCGGCGCCGTCCCTGCTCTA-AATCATCATCCCTTCAACAACAACAACCAT-GTCTTC 269
| | | ||| | || | || || || | |||| ||| | | ||||||
Sbjct 240 AT-------CAT-CCT--T-TAGGACCA-AAT-CCGT--ACAATAACCA-TGTCGTCTTC 283
Query 270 CAACCGCAGCCGCAAACGC-AA-G---TTCCC-CAACCGTC-GATGATTCAGGTCCCTCC 322
||||||||||||||||||| || | |||| |||||| | |||| ||||| | ||||
Sbjct 284 CAACCGCAGCCGCAAACGCAAACGCAAATCCCGCAACCG-CAGATGTTTCAGTTATCTCC 342
Query 323 ACA---TCCCAT-CAACCACCCTCCTTACTCCGAGATGATTTGCGCAGCGATTGCGGCGT 378
||| | | || | |||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 343 ACATGTTTCAATGC-CCCACCCTCCTTACTCCGAAATGATTTGCGCTGCGATTGCGGCGT 401
Query 379 TAAACGAACCGGATGGTTCGAGCAAGATGGCAATTTCGAGATACATCGAGAGATGTCATC 438
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 402 TAAACGAACCGGATGGTTCGAGCAAGATGGCAATTTCGAGATACATCGAGAGATGTTA-C 460
Query 439 -CCGGTTTAACTTCTGCTCATGCTGCTTTGTTGACTCATCATCTCAAGACTTTGAAGAAC 497
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 461 ACCGGTTTAACTTCTGCTCATGCTGCTTTGTTGACTCACCATCTCAAGACTTTGAAGACC 520
Query 498 AGTGGTGTTCTTACTATGGTTAAGAAATCTTACAAAATTGCTGGCTCTTCTACTCCTCCT 557
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 521 AGTGGTGTTCTTTCTATGGTTAAGAAATCTTACAAAATTGCTGGTTCTTCTACTCCTCCT 580
Query 558 GCGAGTGTTGCTGTTGCTGCTGCTGCTGCCGCTCAAGGTCTCGATGTTCCCAGATCTGTG 617
|| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 581 GCTAGTGTAGCTGTTGCTGCTGCTGCCGCCGCTCAAGGTCTCGATGTTCCCAGATCTGAG 640
Query 618 ATTCTCCCTTCAACTAGCAGCACCGTCAACGATCCCATGG---CTGTCTCTGCTTCTCAG 674
||||||| ||| | || | | |||||||||||||| ||| |||||||||||||
Sbjct 641 ATTCTCCATTC-A--AGTA--A----CAACGATCCCATGGCTTCTGGCTCTGCTTCTCAG 691
Query 675 CCTCTGAAACGAGGTCGTGGTCGTCCTCCTAAACCTAAACCCGAAGGTCAACAACAACAA 734
|||||||||||||||||||||||||||||||| |||||||| ||| ||||| ||||| |
Sbjct 692 CCTCTGAAACGAGGTCGTGGTCGTCCTCCTAAGCCTAAACCTGAATCTCAACCACAACCA 751
Query 735 C-CCATCAA--TGCTCAG-CCTATTCAAGTCCAGTCTAACGGACAGCCAATCTGGCAACA 790
| || ||| | | | | || | |||||||||| |||||||||||||||||||| ||||
Sbjct 752 CTACAGCAACTTCCACCGACC-AATCAAGTCCAGGCTAACGGACAGCCAATCTGGGAACA 810
Query 791 GCAGCAAGTCCAACT-ACCTGTGACTGTTCCGGTTCCTGTTACGGAGTCGGCTAAGAGAG 849
||||||||| ||| | |||||| | |||||| ||| ||||| |||||||| |||||||
Sbjct 811 GCAGCAAGTTCAA-TCACCTGTTCCGGTTCCGACTCCGGTTACAGAGTCGGCGAAGAGAG 869
Query 850 GACCTGGTCGTCCAAGGAAGAACGG---AGCTGCTGCTG-T--TGCACCAATCGTGCAAG 903
||||||||||||||||||||||||| |||||| ||| | |||||||||||| ||||
Sbjct 870 GACCTGGTCGTCCAAGGAAGAACGGTTCTGCTGCTCCTGCTACTGCACCAATCGTTCAAG 929
Query 904 CTTCGGTTATGGCTGGAATCATGAAACGTAGAGGTAGACCACCAGGTCGTAGAGCTGCTG 963
||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||
Sbjct 930 CTTCGGTTATGGCTGGAATTATGAAACGTAGAGGTAGACCACCGGGTCGTCGAGCTGCTG 989
Query 964 GGAGACAGAGGAAGCCTAAATCTGTTTCTGCTACTGCTTCTGTGTATCCGTATGTTGCTA 1023
|||||||||||||||| ||||| |||||| ||||||| ||||||||||| ||||||||||
Sbjct 990 GGAGACAGAGGAAGCCCAAATCCGTTTCTTCTACTGCCTCTGTGTATCCTTATGTTGCTA 1049
Query 1024 ATGGTGCTAGACGCAGAGGAAGGCCTAGGAGAGTTGTTGACCCTAGCAGTATCGTTACCG 1083
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1050 ATGGTGCTAGACGCAGAGGAAGGCCTAGGAGAGTTGTTGACCCTAGCAGTATTGTTAGTG 1109
Query 1084 TTGCTCCAGTAGGTGGTGAAAATGTGGCAGCGGTTGCGCC-GGGAATGAAGCGTGGACGA 1142
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1110 TTGCTCCAGTAGGTGGTGAAAATGTGGCAGCGGTTGCGCCAGGG-ATGAAGCGTGGACGT 1168
Query 1143 GGACGACCACCGAAGATTGGTGGTGTTATCAGTAGGC---TTATGAAGCCTAAGAGAGGA 1199
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1169 GGACGACCACCTAAGATTGGTGGTGTTATCAGTAGGCTTATTATGAAGCCTAAGAGAGGA 1228
Query 1200 CGAGGACGTCCTGTAGGTAGACCCAGAAAGTTTGCAACATCAGTCACGACTGGGGCACAA 1259
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||
Sbjct 1229 CGAGGACGTCCTGTAGGTAGACCCAGAAAGATTGGAACATCAGTCACGACTGGGACACAA 1288
Query 1260 GATTCTGGAGAACTCAAGAAAAAGTTTGATATTTTTCAAGAGAAAGTAAAAGAAATCGTG 1319
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||
Sbjct 1289 GATTCTGGAGAACTCAAGAAGAAGTTTGATATTTTTCAAGAGAAAGTGAAAGAAATTGTG 1348
Query 1320 AAGGTGTTGAAAGATGGAGTTACAAGCGAGAATCAAGCAGTGGTGCAAGCCATAAAAGAT 1379
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1349 AAGGTGTTGAAGGATGGAGTTACAAGTGAGAATCAAGCAGTGGTGCAAGCCATAAAAGAT 1408
Query 1380 CTGGAAGCACTAACAGTGACGGAGACGGTTGTTGAGCCACAGGT---GGAAGAAGTGCAG 1436
|||||||||||||||||||||||||| |||| ||||||| || |||||||||||||
Sbjct 1409 CTGGAAGCACTAACAGTGACGGAGACCGTTG---AGCCACAAGTTATGGAAGAAGTGCAG 1465
Query 1437 CCAGAGGAGACTGCTGAACCGCTCACTGAAGCT---------GAAGCTGCTGAAacacaa 1487
|||||||||||||| | ||| | ||||||||| ||||||||||| ||||||
Sbjct 1466 CCAGAGGAGACTGCAGCACCACAGACTGAAGCTCAACAAACTGAAGCTGCTGAGACACAA 1525
Query 1488 ggaggacaggaagagggacaagaaagagaaggaggagaaacacagactcagacagaagca 1547
|||||||| ||||| ||||||||||||||||||| | || ||||||| ||||||||||||
Sbjct 1526 GGAGGACAAGAAGAAGGACAAGAAAGAGAAGGAG-A-AA-CACAGACCCAGACAGAAGCA 1582
Query 1548 gaggCAATGCAAGAAGCTCTGTTCTGAAGAATAATAATGATCTAGAAAACAACCTAGACA 1607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1583 GAGGCAATGCAAGAAGCTCTGTTCTGAAGAATAATAATGATCTAGAAAACAACCTAGACA 1642
Query 1608 TAATAGCCTTGGTGTTTGGCGTTAGGAGGAGTGtttttttAGTTAATTTAGGTGTTGGA- 1666
|||||||||||||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 1643 TAATAGCCTTGGTGTTTGGCGTTAGGAGT-GTTTTTTTTTAGTTGTTTTAGGTGTTGGAA 1701
Query 1667 TCGTATCTTAAATTaaaaaaaaaaaaaTCTATATGGAATTTTAAttttttttGTAGGTTA 1726
||| ||||||||||| | ||||| |||||| ||||||||||||||| | |||||
Sbjct 1702 TCGCATCTTAAATTATATAAAAA----TCTATAAGGAATTTTAATTTTTCT---AGGTTT 1754
Query 1727 TGTTGTCTGCAAAAGAAGAAACAGTAGGCTCGTTAATGGTGTTGTTGTCGGTATGTCTTT 1786
||||||||||| ||||||||| ||||| |||||||||||||||||||||||| |||||||
Sbjct 1755 TGTTGTCTGCAGAAGAAGAAATAGTAGACTCGTTAATGGTGTTGTTGTCGGTGTGTCTTT 1814
Query 1787 AACCAAAC-ATTAAGACGTGGCTGTAAATTAGCGATGTTTCTAGTGTTCCATCTTTAATA 1845
|||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1815 AACCAAACCAT-AAGACGTGGCTGTAAATTAGCGATGTTTCTAGTCTTCCATCTTTAATA 1873
Query 1846 ATCTCTTATTGCGTCCGTGCCTTTGGTTTT 1875
||||||||||||||| ||||||||| ||||
Sbjct 1874 ATCTCTTATTGCGTCTGTGCCTTTGTTTTT 1903
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92820807705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5