BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479301
Length=2516
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18100.1 | Symbols: MYB4R1, AtMYB4R1 | myb domain protein 4r... 2217 0.0
> AT3G18100.1 | Symbols: MYB4R1, AtMYB4R1 | myb domain protein
4r1 | chr3:6200578-6204583 FORWARD LENGTH=2655
Length=2655
Score = 2217 bits (1200), Expect = 0.0
Identities = 1347/1418 (95%), Gaps = 9/1418 (1%)
Strand=Plus/Plus
Query 1009 AATCTGAGCCTTGTGATAGCTCCGAGGGTAATGATAAAAAGACATCTCCTTTGATGTTGG 1068
||| || |||||||||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 1026 AAT-TGGGCCTTGTGATAGCTTCGAGGGTAATGATAAAAAGATATCTCCTTTGACGTTGG 1084
Query 1069 GTCCAGCGGAAAACCCTTGTGTTGCAAATTATAGGATGGCACTAGAGAAATATCCAATTT 1128
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1085 GTCCAGCGGAAAACCCTTGTGTTGAAAATTATAGGATGGCACTAGAGAAATATCCAATTT 1144
Query 1129 CAGTGGAACGCAGAAAATGGTCTACTGAGGAGAAcaaaaaacttgcaaaaggtttaaaac 1188
||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1145 CAGTGAAACGCAGAAAATGGTCTACTGAGGAGAACAAAAACCTCGCAAAAGGTTTAAAAC 1204
Query 1189 aagaagttcaaaaaaTACTGCTTTCTGAAGCTATTGAACAGTCCAGTGACTTGGAAGGAT 1248
||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1205 AAGAAGTTCAAAAGATACTGCTTTCTGAAGCAATTGAACGGTCCAGTGACTTGGAAGGAG 1264
Query 1249 CTACATATGATATAGACACCATCAATGAAGCGATCGGAAATCTTGAGATCACACCAGAAA 1308
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1265 CTACATATGATATAGACACTATCAATGAATCGATCGGAAATCTTGAGATCACACCAGAAA 1324
Query 1309 TGATTAGGCAGTTTCTTCCGAAAATTAACTGGGATTTGTTGGATATCAAGGACCGTTCTG 1368
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1325 TGATTAGGCAGTTTCTTCCGAAAATTAACTGGGATTCGTTGGATATCAAGGACCGTTCTG 1384
Query 1369 CTGCAGAATGTGAAGCTCGGTGGATGAGCTCGGAAGATCCATTGATTAACCACGGTCCGT 1428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1385 CTGCAGAATGTGAAGCTCGGTGGATGAGCTCGGAAGATCCATTGATTAACCACGGTCCGT 1444
Query 1429 GGACTGCAGCAGAGGACAAAAACCTTCTCCGAATTATCGaaaaaaaGAGTCTTACAGACT 1488
||||||||||||||||||||||||| ||||||| ||||||| ||| ||||||||||||||
Sbjct 1445 GGACTGCAGCAGAGGACAAAAACCTACTCCGAACTATCGAACAAACGAGTCTTACAGACT 1504
Query 1489 GGGTTGATATTGCGGTGTCACTAGGGACAAATAGGACCCCATTTCAATGTTTGACTCGAT 1548
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1505 GGGTTGATATCGCGGTGTCACTAGGGACAAATAGGACCCCATTTCAATGTTTGGCTCGAT 1564
Query 1549 ATCAGAGAAGCTTGAATCCAAGCATATTGAAAAAAGAATGGACTGCAGAGGAAGATGATC 1608
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1565 ATCAGAGAAGCTTGAATCCAAGCATATTGAAAAAAGAATGGACTGCAGAGGAAGATGACC 1624
Query 1609 AACTTCGTGCTGCAGTAGAGTTATTTGGCGATAAAGACTGGCAATCTGTTGCAAATGTAT 1668
|||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1625 AACTTCGTACTGCAGTAGAGTTATTTGGGGAGAAAGACTGGCAATCTGTTGCAAATGTAT 1684
Query 1669 TAAAAGGAAGAACTGGACCTCAGTGCTCAAATAGATGGAAAAAGTCGCTTCGCCCGACCA 1728
||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1685 TAAAAGGAAGAACTGGAACTCAGTGCTCGAATAGATGGAAAAAGTCGCTTCGCCCTACCA 1744
Query 1729 GAAAAGGGACATGGAGCTTAGAGGAAGACAAGCGTGTGAAAG-TAGCTGTAACACTCTTT 1787
||||||||||||||||||||||||||||||| ||||| |||| ||||||| |||||||||
Sbjct 1745 GAAAAGGGACATGGAGCTTAGAGGAAGACAAACGTGT-AAAGGTAGCTGTGACACTCTTT 1803
Query 1788 GGATCTCAAAACTGGCATAAGATTTCTCAGTTTGTTCCTGGACGGACCCAGACTCAGTGT 1847
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1804 GGATCTCAAAACTGGCATAAAATTTCTCAGTTTGTTCCTGGACGGACTCAGACTCAGTGT 1863
Query 1848 CGGGAGAGATGGTTAAATTGTTTAGATCCCAAAGTAAATCGTGGGAAGTGGACTGAGGAA 1907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1864 CGGGAGAGATGGTTAAATTGTTTAGATCCCAAAGTAAATCGTGGGAAGTGGACTGAGGAA 1923
Query 1908 GAGGATGGAAAGTTGAGAGAAGCAATTGCAGAACATGGATATAGCTGGTCTAAGGTTGCT 1967
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1924 GAGGATGAAAAGTTGAGAGAAGCAATTGCAGAGCATGGATATAGCTGGTCTAAGGTGGCT 1983
Query 1968 TCTAAACTATCTTGTCGTACTGACAGTCAGTGCTTGAGGAGATGGAAGAGATTATATCCT 2027
|||| || || ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1984 ACTAATCTGTCATGTCGTACTGACAATCAGTGCTTGAGGAGATGGAAGAGATTATATCCT 2043
Query 2028 CATCAAGTGGCTCTTTTACAAGAAGCTAGAAGGTTACAAAAAGAAGGTAGTGTAGGTAAT 2087
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2044 CATCAAGTGGCTCTTTTACAAGAAGCTAGAAGGTTACAAAAAGAAGCTAGTGTAGGTAAT 2103
Query 2088 TTTGTTGACCGGGAATCAGAGCGTCCTTCTCTTGTCACAGGCGCTATTTTGGCACTGCCG 2147
|||||||| |||||||||||||||||| ||||||||||| || ||||||||||||| |||
Sbjct 2104 TTTGTTGATCGGGAATCAGAGCGTCCTGCTCTTGTCACAAGCCCTATTTTGGCACTACCG 2163
Query 2148 GAGATATCTCTAGAGCCAGAACCCGATAGTGTAACTGTgaagaagaaacgcaaggccaaa 2207
|| |||||||||||||||||||||||||||||| | |||||||||||||||| |||||
Sbjct 2164 GATATATCTCTAGAGCCAGAACCCGATAGTGTAGCCCTGAAGAAGAAACGCAAAGCCAA- 2222
Query 2208 g-agaagaagtcagatgcagagagacaaccaaagagacgaagaaaAGCATTAAAGAAATG 2266
| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||
Sbjct 2223 GCAGAAGAAGTCAGATGCAGAGAGACAACCAAAGAGACGGAGAAAAGGATTAAAGAACTG 2282
Query 2267 CTCAGGAGATGTATGTAGACAAGAGAATGAGACTGTTTGTGAAAATGAACCAAACAATGG 2326
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2283 CTCAGGAGATGTATGTAGACAAGAGAATGAGACTGTTTGTGAAAATGAACCGAACAATGG 2342
Query 2327 AGGAGAGGAGAGGTTGTTGGAATTGGAATGTCATAACGAGATCCTAGGCAATGCAAAGGA 2386
||||||||| ||| |||||| ||||||||||||| ||||||||| || ||||||||||||
Sbjct 2343 AGGAGAGGAAAGGATGTTGGCATTGGAATGTCATGACGAGATCCAAGACAATGCAAAGGA 2402
Query 2387 GAAAC-AAAGACGAAA-ACGCAAAAGTGTTGCAGAAAC 2422
||| | ||| || ||| |||||||||||||||||||||
Sbjct 2403 GAAGCCAAA-AC-AAAGACGCAAAAGTGTTGCAGAAAC 2438
Score = 1024 bits (554), Expect = 0.0
Identities = 680/737 (92%), Gaps = 23/737 (3%)
Strand=Plus/Plus
Query 1 TCTTCTTCTTCTAGAGGCATAAACCCTTCGCTTGGAGCCGTTTCTCGCATTCTTCGA--T 58
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
Sbjct 5 TCTTCTTCTTCTAGAGGCATAAACCCTTGGCTTGGAGCCGTTTCTCTCATTCTTCGATTT 64
Query 59 --TTC-A---C---TT--T-------G-TTTCTCTTTCTGTATCGCGATGAATCGGAACA 99
||| | | || | | ||||||||||||||||||||||||||||||||
Sbjct 65 GATTCAATTTCATTTTCATAAAGAAGGATTTCTCTTTCTGTATCGCGATGAATCGGAACA 124
Query 100 GCCTATACGAAGCTGATGACGATGATGACGATGACGAAGAAGATGACATCGGTGAAGACC 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 GCCTATACGAAGCTGATGACGATGATGACGATGACGAAGAAGATGACATCGGTGAAGACC 184
Query 160 TCGAAGATTTAAGACGCGCCTGCATGGTCTCTGACGTTAATTCCGATAAATTCGCGGCAA 219
||||||||||||||||||| || |||||||||||||||||||||||| |||||||| |||
Sbjct 185 TCGAAGATTTAAGACGCGCATGTATGGTCTCTGACGTTAATTCCGATCAATTCGCGTCAA 244
Query 220 AAATCGGTTCAATTGAACCGGATGGAGGCGGTGGCGGAGAGATGCCGTCGGATTCAGAAA 279
||| |||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||
Sbjct 245 AAACCGGTTCAATTGAACCGGAAGGAGTCGGTGGCGGAGAGATACCGTCGGATTCAGAAA 304
Query 280 ACGAAGATGACTTTGAGATGCTTCGTAGCA-TTAAGAGCCAATTAGCATCTTCCAAAGAT 338
||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||
Sbjct 305 ACGAAGATGACTTTGAGATGCTTCGTA-CAATTAAGAGCCAATTAGCATCTTCCAAGGAT 363
Query 339 GCGGATTTAAGCAGTGGTCCTCCCATTGGTTTATCTTTGCTCTCGGATTCGGAGAGTGAA 398
|||| | |||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 364 GCGGGTAGAAGCAGTGGTCCTCCCATGGGTTTGTCCTTGCTCTCGGATTCGGAGAGTGAA 423
Query 399 GATGATTTCGAGTTGATTCGGAGCATTAAGAGCCAATTGGCATTGTCCATGGATATGTCT 458
|||||||||||| |||||||||| ||||||||||||||| |||||||||||||| ||||
Sbjct 424 GATGATTTCGAGATGATTCGGAGTATTAAGAGCCAATTGTCATTGTCCATGGATGTGTCC 483
Query 459 CTTCCTTCAATTGGTTTATCTGACGATGACGAAGATGATGCCTTTGAAACCCTTCGAGCT 518
|||||| |||||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 484 CTTCCTCCAATTGGTTTATCTGACGATGAAGAAGATGATGCCTTTGAAACACTTCGTGCT 543
Query 519 ATTCGTAGGCGATTCTCTGCTTATAAGAATTTCGATTCGGAAGGAAATTTCATGAATGAT 578
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 544 ATTCGTAGGCGATTCTCTGCTTATAAGAATTTCGATTCGGAAGGAAAATTCATGAATGAT 603
Query 579 TCTCCCGGGAAGAAAAAGCAGGTACATGACTTGGATAATGAACCTTCAAGCGAATTATTG 638
|||| |||||||||||||||||||||| ||| ||| |||||||||||||||||| |||||
Sbjct 604 TCTCACGGGAAGAAAAAGCAGGTACATAACTCGGACAATGAACCTTCAAGCGAAATATTG 663
Query 639 AGTAGATCTAATACTTGTGAAAGCTTTCCAGATCACGGGAAATCAGTTGTCACAGTGCCA 698
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 664 AGTAGATCTAATACTTGTGAAAGCTTTCCAGATCACGGGAAATCAGTTGTCACTGTGCCA 723
Query 699 GATTCAGAGGATGTACA 715
|| ||||||||||||||
Sbjct 724 GACTCAGAGGATGTACA 740
Score = 424 bits (229), Expect = 3e-117
Identities = 260/275 (95%), Gaps = 1/275 (0%)
Strand=Plus/Plus
Query 766 CAGCTGCGAGTTCAAGTTTCCCTAAAGCTGCACTAGCCTTTGTTGATGCAATCAGGAGGA 825
||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||| |
Sbjct 755 CAGCTGCGAGTTCAAGTTTCCCTGAAGCTGCACGAGCGTTTGTTGATGCAATCAGGAGAA 814
Query 826 ACAGGGCATATCAGAAATTTCTTAGAAGAAAATTGGTAGAAATTGAAGCAACGATCGAGC 885
|||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 815 ACAGAGCATATCAGAAATTTCTTAGAGGAAAATTGGCAGAAATTGAAGCAACGATCGAGC 874
Query 886 AGAACGAGAAACACAAGAAAAATGTTAAAATAGTTAAAGATTTTCAAGCTTCTTGCAAGA 945
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 875 AGAACGAGAAACACAAGAAAAATGTTAGAATAGTCAAAGATTTTCAAGCTTCTTGCAAGA 934
Query 946 GAATTACTAAACTGGCACTCTCTCAGAAGAAAGATCCTCGTGTCGAGTTAATCTCAACAC 1005
||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||
Sbjct 935 GAATTACTAAACTGGCACTCTGTCAGAGGAAAGATCCTCGTGTCGAATTAATCTCAACAC 994
Query 1006 GAAAATCTGAGCCTTGTGATAGCTCCGAGGGTAAT 1040
| ||||||| |||||||||||||||||||| ||||
Sbjct 995 GGAAATCTGGGCCTTGTGATAGCTCCGAGG-TAAT 1028
Score = 322 bits (174), Expect = 1e-86
Identities = 205/220 (93%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 2298 ACTGTTTGTGAAAATGAACCAAACAATGGAGGAGAGGAGAGGTTGTTGGAATTGGAATGT 2357
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 2437 ACTGTTTGTGAAAATGAACCAAACAATGGAGGAGAGGAGAGGATGTTGGCATTGGAATGT 2496
Query 2358 CATAACGAGATCCTAGGCAATGCAAAGGAGAAAC-AAAGACGAAAACGCAAAAGTGTTGC 2416
|||||||||||| || ||||||||||||||||| ||| ||||| |||||||||||||||
Sbjct 2497 GATAACGAGATCCAAGACAATGCAAAGGAGAAACGAAA-ACGAAGACGCAAAAGTGTTGC 2555
Query 2417 AGAAACATCGAACAACAACACTGGTTTaaaaaaaCTTACGCCTAGGAGAAAGAAAGTGTC 2476
||||||||| ||||||| |||||||||||||||||||||||||||||||| |||| | ||
Sbjct 2556 AGAAACATCTAACAACACCACTGGTTTAAAAAAACTTACGCCTAGGAGAAGGAAAATATC 2615
Query 2477 TGCAGTAGTTCCTATCAAGAACCAAGATGCACCAAATTAG 2516
|||||| |||||||| ||||||||||||||||||||||||
Sbjct 2616 TGCAGTTGTTCCTATTAAGAACCAAGATGCACCAAATTAG 2655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124865521127
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5