BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479308
Length=1436
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18160.3 | Symbols: PEX3-1 | peroxin 3-1 | chr3:6220918-6223... 1777 0.0
AT1G48635.2 | Symbols: PEX3, PEX3-2 | peroxin 3 | chr1:17983733... 521 6e-147
> AT3G18160.3 | Symbols: PEX3-1 | peroxin 3-1 | chr3:6220918-6223073
FORWARD LENGTH=1281
Length=1281
Score = 1777 bits (962), Expect = 0.0
Identities = 1093/1156 (95%), Gaps = 9/1156 (1%)
Strand=Plus/Plus
Query 284 GGAAACATAGAAGGAAGATTTTGGTGACGACGACTTGTTTGGGAAGTGGGTATTTACTCT 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 80 GGAAACATAGAAGGAAGATTTTGGTGACGACGACTTGTTTGGGAAGTGGGTATTTGCTCT 139
Query 344 ACAAACTATACAATGCTCATACTCGTAAGCTCGCTGATTTGGAACGAGAGCTTGCTTATG 403
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 140 ATAAACTATACAATGCCCATACTCGTAAGCTCGCTGATTTGGAACGAGAGCTTGCTAATG 199
Query 404 AGCGTGAAAATGACGAGATCATCAAAACCCAAATGAAGGCACATTTTGATAACATTCAGA 463
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 200 AGCGTGAAAACGACGAGATCATCAAAACCCAAATGAAGGCACATTTCGATAACATTCAGA 259
Query 464 TGATTGCTGATACTACTACATTGCCTCACGCAATGCATCACTTGAGTAGCCGTTTAGTTG 523
|||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||
Sbjct 260 TGATTGCTGATACTACTACATTGCCTCACGCAATTCATCACTTGAGTAGTCGTGTAGTTG 319
Query 524 AAGAGATTGATGTCTCTAGTATTATGGATAAACTAAGCAAAGGAAAAGGAATATTGATTC 583
|||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 320 AAGAGATTGATGTCTCGAGTATTATGGATAAGCTAAGCAAAGGCAAAGGAATATTGATTC 379
Query 584 CTTCTGAGAAGCTTCATCTCTGGAATGAGCTCAAAATTTTGAGTTTCACGAGGATGGTTT 643
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 380 CTTCTGAGAAGCTTCAACTCTGGAATGAGCTCAAAATTTTGAGTTTCACGAGAATGGTCT 439
Query 644 TGTCTCTTTGGTCTGTCACTATGCTTAGTTTGTACATTAGGGTTCAAGTCAATATTTTGG 703
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 TGTCCCTTTGGTCGGTCACTATGCTTAGTTTGTACATTAGGGTTCAAGTCAATATTTTGG 499
Query 704 GCAGACATTTATATATCGACACTGCTAGAGGTCTTGGGAGCTCCCATTTACTTGAAGAAC 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 500 GCAGACATTTATATATCGACACTGCTAGAGGTCTTGGGAGCTCCCATTTACTTGACGAAC 559
Query 764 TAGATCTCATAGATAGAGATGACGAACAAAAGTTTTTGGCAAGCGCTGATTTTCTTGCGA 823
||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 560 TAGATCTCATAGAGAGAGATGATGAACAAAAGTTTTTGACAAGCGCTGATTTTCTTGCGA 619
Query 824 CCAGTGGCATGCCGAGTTTGATTTCTAATATGCAGGGTGCAGTGAAAGAAGTTCTAAAGG 883
|||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||
Sbjct 620 CCAGTGGCATGCCGAGTTTGATTTCTAACATGCAGAACGCAGTGAAAGAAGTTCTCAAGG 679
Query 884 GAAAGCAGTTGAAGGATGTGTTTACCACAAGGGTTCTTCAAGAAACTGTGATGCGGATTC 943
|||||||||| ||||||||||| |||||||| | ||||| ||||||||||||||||||||
Sbjct 680 GAAAGCAGTTAAAGGATGTGTTAACCACAAGTGCTCTTCGAGAAACTGTGATGCGGATTC 739
Query 944 TCGATGTGTTTATGAGCACTGGAAGTCCACATCACTGGGTAGATTATCTAATGATGTCCC 1003
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 740 TCGATGTGTTTATGAGCACAGGAAGTCCACACCACTGGGTAGATTATCTAATGATGTCCC 799
Query 1004 AAGATGCAACCATTGATGTTTCCTCTTCTGATGCAACTGTTACCAAGTTTCATCAACTCA 1063
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 800 AAGACGCAACCACTGATGTTTCCTCTTCTGATGCAACTGTTACCAAGTTTCATCTACTCA 859
Query 1064 TAACCGAGACACGGGAAGTAGTCACAAGCAATGATTTTACAAATGTAGCAGAGATCTCAC 1123
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 860 TAACCGAGACACGGGAAGTACTCACAAGCAATGATTTTTCAAATGTAGCAGAGATCTCAC 919
Query 1124 TCAAGTGTTGTGCCGTTGCGTTAGTAGAGGAGATGGAAACACAGACCGCTTTGGCCACAG 1183
|||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||
Sbjct 920 TCAAGTGTTGTGCCGTTGCGTTAGTAGAGGAGATGGAAACGCAGACCGGTCTGGCCACAG 979
Query 1184 GGCTGCAATTGGCGAAGCTATTACCACAGATTGAGAAGACCATGCCAGAGATTTCAGCTG 1243
|| |||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 980 GGATGCAATTGGCAAAGCTATTACCACAGATTGAGAAAACCATGCCGGAGATTTCAGCTG 1039
Query 1244 AACCA-AGCAAGAACCGGTTCTTGCAACTCATCCGAGATTTGCCTGAAGTTAAACTCTTT 1302
| || || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 AGCCGGAG-AAGAACCGGTTCTTGCAACTCATCCGAGATTTGCCTGAAGTTAAACTCTTT 1098
Query 1303 TTTACTCTTTTATACGCAAATATGCCTCAGTAGCATCATTATTAAACCCCCATTGCCAAA 1362
|||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||
Sbjct 1099 TTTACTCTTTTATACGCAAATATGCCTCAGTAGCAT--T-ATTAAACCCC-ATTGCCAAA 1154
Query 1363 --TTGTTTGCTCATCACTTTTTATTTTGTGTTTTCAATTTACTTCAAAATAGTAAAATCA 1420
|||||| || |||||||||||| | ||||| | ||||||||||||||||||||| ||
Sbjct 1155 AATTGTTTCCTGATCACTTTTTATCATATGTTT-CGATTTACTTCAAAATAGTAAAACCA 1213
Query 1421 AACATCTCTAGAATAA 1436
||||||||||||||||
Sbjct 1214 AACATCTCTAGAATAA 1229
> AT1G48635.2 | Symbols: PEX3, PEX3-2 | peroxin 3 | chr1:17983733-17986116
FORWARD LENGTH=1571
Length=1571
Score = 521 bits (282), Expect = 6e-147
Identities = 453/535 (85%), Gaps = 14/535 (3%)
Strand=Plus/Plus
Query 229 GGTTCGAATCCAGTAGTAGCTTCA-AAGGTCATGGATTTAGTCAGGGGTTTCTGGAGGAA 287
||||||| | ||||| ||||||| | | ||||||||| || |||||||| ||||||||
Sbjct 189 GGTTCGACTTCAGTAAAAGCTTCACCA-GCCATGGATTTCGTTAGGGGTTTTTGGAGGAA 247
Query 288 ACATAGAAGGAAGATTTTGGTGACGAC-GACTTGTTTGGGAAGTGGGTATTTACTCTACA 346
|||||||||||| | ||||||||| | | |||||||||||||||||||||||||||||
Sbjct 248 GCATAGAAGGAAGGTCTTGGTGACGGCTG-GTTGTTTGGGAAGTGGGTATTTACTCTACA 306
Query 347 AACTATACAATGCTCATACTCGTAAGCTCGCTGATTTGGAACGAGAGCTTGCTTATGAGC 406
||||||||||| | |||||||||| ||| ||||||||||||||||| || ||| | ||||
Sbjct 307 AACTATACAATTCCCATACTCGTAGGCTTGCTGATTTGGAACGAGAACTCGCTCACGAGC 366
Query 407 GTGAAAATGACGAGATCATCAAAACCCAAATGAAGGCACATTTTGATAACATTCAGATGA 466
||||||||||||| |||||||||||||||||||| |||||||| || | ||||||||||
Sbjct 367 GTGAAAATGACGAAATCATCAAAACCCAAATGAAAGCACATTTCGAGAGTATTCAGATGA 426
Query 467 TTGCTG-ATACTACTACATTGCCTCACGCAATGCA-TCACTTGAGTAGCCGTTT-AGTTG 523
||| || || | || ||| |||||||||||||||| | ||||||| |||| | || |
Sbjct 427 TTG-TGGATTCGACCACACTGCCTCACGCAATGCAGTTT-TTGAGTATCCGTATCAGC-G 483
Query 524 AAGAGATTGATGTCTCT-AGTATTATGGATAAACT-AAGCAAAGGAAAAGGAATATTGAT 581
| ||||| ||||||||| | | ||||||| | ||| || ||| ||||| ||||| |||
Sbjct 484 AGGAGATCGATGTCTCTCA-TGTTATGGACAGACTGAACCAAGGGAAA-GGAATGCTGAG 541
Query 582 TCCTTCTGAGAAGCTTCATCTCTGGAATGAGCTCAAAATTTTGAGTTTCACGAGGATGGT 641
||| ||||||| ||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct 542 TCCACCTGAGAAACTTCAGCTCTGGGATGAGCTCAAGATTTTGAGTTTCACGAGGATGGT 601
Query 642 TTTGTCTCTTTGGTCTGTCACTATGCTTAGTTTGTACATTAGGGTTCAAGTCAATATTTT 701
||||||||| |||||||| || |||||||| || |||||||||||||||||||| |||||
Sbjct 602 TTTGTCTCTGTGGTCTGTGACAATGCTTAGCTTATACATTAGGGTTCAAGTCAACATTTT 661
Query 702 GGGCAGACATTTATATATCGACACTGCTAGAGGTCTTGGGAGCTCCCATTTACTT 756
||||||||||| ||| | ||||| ||| ||| |||||| ||||| |||||||||
Sbjct 662 AGGCAGACATTTGTATGTTGACACCGCTCGAGCTCTTGGCAGCTCTCATTTACTT 716
Score = 444 bits (240), Expect = 1e-123
Identities = 496/613 (81%), Gaps = 44/613 (7%)
Strand=Plus/Plus
Query 756 TGAAGAACTAGATCTCATAGATAGAGATGACGAACAAAAGTTTTTGGCAAGCGCTGATTT 815
|||||| |||||||||| ||||||||||| ||||| ||||||||| | || ||||||||
Sbjct 824 TGAAGAGGTAGATCTCATTGATAGAGATGATGAACAGAAGTTTTTGTCGAGTGCTGATTT 883
Query 816 TCTTG-CGACCAGTGGC-ATGCCGAGTTTGATTTCTA-ATATGCAGGGTGCAG-TGAAAG 871
||||| | |||| | || ||||| ||||||||||| | ||||||||||| ||| | | |
Sbjct 884 TCTTGTC-ACCAAT-GCAATGCCAAGTTTGATTTC-AGATATGCAGGGTTCAGCCG-AGG 939
Query 872 AAGTTC-TAAAGGGAAAGCAGTTGAAGGATGTGTTTACCACAAGGGTTCTTCAAGAAACT 930
|||| | |||| ||||||||||| |||||||| |||||||||| ||||||||||||||
Sbjct 940 AAGTCCTTAAA-GGAAAGCAGTTAAAGGATGTAATTACCACAAGAGTTCTTCAAGAAACC 998
Query 931 GTGATGCGGATTCTCGATGTGTTTATGAGCACTGGAAGTCCACATCACTGGGTAGATTAT 990
||||||| |||| | ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 999 GTGATGCAGATTGTAGATGTGTTTATGAGCACTGGAAGCCCACATCACTGGGTTGATTAT 1058
Query 991 CTAATGATGTCC-CAAGATGC-AACCATT---G------ATGTTTCCTCTTCTGATGCAA 1039
|||||||| || ||||| | || | || | | | | ||||||||||| ||
Sbjct 1059 TTAATGATG-CCTCAAGACACAAAGCTTTCAAGAACCACAAG-TGACTCTTCTGATG-AA 1115
Query 1040 -CTGT-TACCAAGTTTCATCAACTCATAACCGAGACACGGGAAGTAGTCA-CAAGCAATG 1096
|||| | ||||||||||||||||||| ||||| || |||||| ||| | |||| ||
Sbjct 1116 GCTGTGT-CCAAGTTTCATCAACTCATGGTTGAGACTCGAGAAGTACTCATC-AGCACTG 1173
Query 1097 ATTTTACAAATGTAG-CAGAGATCTCACTCAAGTG-TTGTGCCGTTGCGTTAGTAGAGGA 1154
| || |||||| ||| | || || || |||||||| || | | || ||| ||||||||
Sbjct 1174 AATTCACAAATATAGTC-GAAATTTCGCTCAAGTGCTT-CACGGATGTGTTGGTAGAGGA 1231
Query 1155 GATGGAAACACAGAC-----C--GC--TTTGGCCACAGGGCTGCAATTGGCGAAGCTATT 1205
|||||||| ||||| | || |||||| |||||| | |||||| ||| | ||
Sbjct 1232 AATGGAAACGCAGACTGAAGCAGGCGGTTTGGCTACAGGGAAACCATTGGCAAAGGTCTT 1291
Query 1206 ACCACAGATTGAGAAGACCATGCCA-GAGATTTCAGCTGAACCAAGCAAGAACCGGTTCT 1264
|||||||||||||||||| ||| | | |||| |||||||||||||||||||||||||||
Sbjct 1292 ACCACAGATTGAGAAGACAATG-AATGTGATTACAGCTGAACCAAGCAAGAACCGGTTCT 1350
Query 1265 TGCAACTCATCCGAGATTTGCCTGAAGTTAAACTCTTTTTTACTCTTTTATACGCAAATA 1324
| ||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1351 TACAAATCATCAGAGATCTGCCTGAAGTTAAACTCTTTTTTACTCTTTTATACGCTAATA 1410
Query 1325 TGCCTCAGTAGCA 1337
|||| || |||||
Sbjct 1411 TGCCGCAATAGCA 1423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70782768450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5