BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479309
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18165.1 | Symbols: MOS4 | modifier of snc1,4 | chr3:6223188... 1493 0.0
> AT3G18165.1 | Symbols: MOS4 | modifier of snc1,4 | chr3:6223188-6225372
FORWARD LENGTH=1118
Length=1118
Score = 1493 bits (808), Expect = 0.0
Identities = 963/1037 (93%), Gaps = 14/1037 (1%)
Strand=Plus/Plus
Query 1 TCACTCTCTGGGTACTTTCGATTTCTGAAGTCGAGAGACGATTATGGCGACGAACAATGG 60
||||| ||||| |||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 18 TCACTATCTGGACACTTTCGATTTCTGAAGTTGAGAGACGACTATGGCGACGAACAATGG 77
Query 61 GGACGTTTTGATGCTGGAGGCGGCGCCGGAGGCTGCGAGGCCATGGGCTAGTGCGGCGAA 120
|| || |||||| |||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 78 TGATGTCTTGATGTTGGAGGCGACGCCGGAGGCTGCGAGGCCCTGGGCTAGTGCGGCGAA 137
Query 121 TGCAGAAGTTATCGATGCGCTTCCTTATATCGACGACGACTATGGCAATCCATTGATTAA 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 138 TGCAGAAGTTATCGATGCGCTTCCTTATATAGACGACGACTATGGCAATCCATTGATTAA 197
Query 181 GTCGGAGGTCGACCGCTTGGTGGAGGAAGAGATGCGTCGGAGCTCTAAGAAGCCAGCTGA 240
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 GTCGGAGGTAGACCGTTTGGTGGAGGAAGAGATGCGTCGGAGCTCTAAGAAGCCAGCTGA 257
Query 241 CTTTCTCAAGGACTTGCCTCCTCTTCCGAAGTTCGATTTCGAGAACTGCCCAGTTCTTGG 300
|||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 258 CTTTCTAAAGGACTTGCCTCCTCTTCCGAAGTTCGATTTTAAGAACTGCCCTGTTCTTGG 317
Query 301 CAAAGAGTATGAGCGTGTTCGAGCTGGGAAGCCTCCAGTGCGGATAGATTTTGAATCCCG 360
||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||
Sbjct 318 CAAAGAGTATGAGCGTGTTAGAGCTGGGAAGCCTCCTGTGCGGATAGATTTCGAATCCCG 377
Query 361 ATACAAGCTTGAATTGCCGCCTGCTAATAAGAGTAATGATGCTGCTGCCTGGAAGCAGTA 420
|||||| |||||| |||| ||||| |||||||| ||||||| ||||||||||||||||||
Sbjct 378 ATACAAACTTGAAATGCCACCTGCCAATAAGAGGAATGATGATGCTGCCTGGAAGCAGTA 437
Query 421 TCTTCAGAAGAATCAGCGGTCATTGCAACAGAAGATGATCGAGCTTGAGAATTTGGAATT 480
||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 438 TCTTCAGAAGAATCAACGGTCATTGCAACAGAAGCTGATTGAGCTTGAGAATTTGGAATT 497
Query 481 GATGTCAAAACTTGGCCCCGAGCTTTGGAGACAGAACAACCATCGGCTCGAAGTATTCTT 540
||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 498 GATGTCAAAACTTGGCCCCGAGCTTTGGAGACAGAACAACCATCGCCTTGAAGTATTTTT 557
Query 541 GACAAGAATGCAAAGACTGGCGCAGGAGCAGAACAAGGAAATTGAAAAAGTAAATCGGGA 600
||| |||||||||||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 558 GACCAGAATGCAAAGACTAGCACAGGAGCAGAATGAGGAAATTGAAAAAGTAAATCGGGA 617
Query 601 AAGGAAGTATCATCAGCAAACCACATCATACGAGCTCAATGCTCTATCTCAAGAATGGAG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 AAGGAAGTATCATCAGCAAACCACATCATACGAGCTCAATGCTCTATCTCAAGAATGGAG 677
Query 661 ACAGCTCTGCGTGAAGAATATGGAGATTCAGTCTGCTTGTGCCATGCTTGAGACACAGAT 720
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 ACAGCTCTGTGTTAAGAATATGGAGATTCAGTCTGCTTGTGCCATGCTTGAGACACAGAT 737
Query 721 GGATTCGTTCAAAAAAGAAGCTGCTGAAAGGGGATGGAACTTAGAAGAGAAACTAGAGAA 780
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 738 CGATTCGTTCAAGAAAGAAGCTGCTGAAAGGGGTTGGAACTTAGAAGAGAAACTAGAGAA 797
Query 781 GGTCGAGCCACTTCAAATGCAATGAGGCGCCTCCCTTGCTCTTACGTAA-AGTGGGTTCA 839
||||||||||||||||||||||||||||||||||||||||||| |||| | | ||||||
Sbjct 798 CGTCGAGCCACTTCAAATGCAATGAGGCGCCTCCCTTGCTCTTAAGTAACA-TAGGTTCA 856
Query 840 GACCCGAACAGCTGTTGGCCAGTTTGGTTTGAGTTGTGCGCTAA-AGAATCAAAGACGAG 898
|| | |||| ||||||| ||||||||||||||||||| | ||| |||||||||||||||
Sbjct 857 GAGCAAAACAACTGTTGGTCAGTTTGGTTTGAGTTGTGGGTTAAGAGAATCAAAGACGAG 916
Query 899 AGACAGTTTCAGTTATTTGGCAGTTTTGTGAAATCATCTGCTTTCCTGTCTAGTGGTGTG 958
| |||||||||||||||| ||||||||||||||| |||||| ||||||| |||||||||
Sbjct 917 A--CAGTTTCAGTTATTTGCCAGTTTTGTGAAATCCTCTGCTCTCCTGTCAAGTGGTGTG 974
Query 959 TGGGACAAGTAATTGTTTTTGAAAGTATCGAAAGTTCGAAACTCTTTAATTTATTAAAGC 1018
||||||||||||||| ||||||||||||||||| | |||||||||||| | ||
Sbjct 975 TGGGACAAGTAATTGCTTTTGAAAGTATCGAAA---C-----TCTTTAATTTATCGA-GC 1025
Query 1019 ATAACGTTTACGATTTG 1035
|||||||||||||||||
Sbjct 1026 ATAACGTTTACGATTTG 1042
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50736488470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5