BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479315
Length=1309
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18200.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 2041 0.0
> AT3G18200.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr3:6234306-6236091 REVERSE LENGTH=1318
Length=1318
Score = 2041 bits (1105), Expect = 0.0
Identities = 1247/1314 (95%), Gaps = 16/1314 (1%)
Strand=Plus/Plus
Query 1 AAGAAGAAGAAGAGACAATGGGGAAAGGAGTAGTATCAGAGAAGGTGAAGCTTGTGGTGG 60
|||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 16 AAGAAGAAAAAGAGAAAATGGGGAAAGGAGTAGTATCAGAGAAGGTGAAGCTCGTGGTGG 75
Query 61 CATTGATCACACTTCAGTTCTGTTTCGCAGGCTTCCACATTGTCTCAAGAGTTGCTCTTA 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 76 CATTGATCACACTTCAGTTTTGTTTCGCAGGCTTCCACATTGTCTCAAGAGTTGCTCTTA 135
Query 121 ACATTGGTGTCAGCAAAGTTGTGTACCCTGTTTATCGGAATCTCCTTGCCCTTCTCCTCA 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 136 ACATTGGTGTCAGCAAAGTTGTGTACCCTGTTTATAGGAATCTCCTTGCCCTTCTCCTCA 195
Query 181 TAGGTCCCTTCGCTTACTTCTTCGaaaaaaaGGAAAGACCTCCACTCACAATCTCTTTAC 240
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 196 TAGGTCCCTTCGCTTACTTCTTCGAAAAAAAAGAAAGACCTCCACTTACAATCTCTTTAC 255
Query 241 TGGCGCAGTTCTTCTTCTTGGCACTCATAGGAATCACAGCGAACCAAGGATTTTACCTAT 300
|||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 256 TGGCTCAGTTCTTCTTCTTGGCACTCATAGGCATCACAGCGAACCAAGGATTCTACCTAT 315
Query 301 TGGGACTTTACTATGCAACTCCAACGTTTGCTTCCGCAATGCAGAACTCTGTTCCTGCCA 360
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 316 TAGGACTTTACTATGCAACTCCAACTTTTGCTTCCGCAATGCAGAACTCTGTTCCTGCCA 375
Query 361 TCACTTTCATCATGGCTTGTACAC-TAAGGTTAGAGCACATAGACCTGGTCAGGAAACAT 419
|||||||||||||||||||| | | ||||| |||||||||||||||||||||||||||||
Sbjct 376 TCACTTTCATCATGGCTTGTGC-CTTAAGGCTAGAGCACATAGACCTGGTCAGGAAACAT 434
Query 420 GGTGTGGCCAAAGTATTGGGAACTCTTGTGAGCATCGGTGGAGCCACCGTGATCACATTA 479
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 GGTGTGGCAAAAGTATTGGGAACTCTTGTGAGCATCGGTGGAGCCACCGTGATCACATTG 494
Query 480 TACAGAGGATTTCCGATATTTGACCAGGGCCTTAACATGCAAAAGGAAGAGGTGATCGGA 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 495 TACAGAGGATTTCCGATATTTGACCAGGGCCTTAACATGCAAAAGGAAGAGGTGGTCGGA 554
Query 540 TCTGACAAATCATCGCACAACTGGAAACTCGGATGGTTATACCTTATGGGACATTGTCTG 599
|||||| || | ||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 555 TCTGAC-AA-C-TCGCACAGCTTGACACTCGGATGGTTATACCTTATGGGACATTGTCTG 611
Query 600 TCATGGGCTGGTTGGATGGTTCTTCAAGCTCCTGTTCTAAAGCAATACCCGGCAAAGCTC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 612 TCATGGGCTGGTTGGATGGTTCTTCAAGCTCCTGTTCTAAAGCAATACCCGGCGAAGCTC 671
Query 660 ACTTTAACATCCTTCACATGTTTCTTTGGTCTGATTCAGTTTCTGGTCATTGCTCTGTTT 719
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 672 ACTTTAACATCCTTCACATGTTTCTTTGGTCTGATTCAGTTTCTGGTTATTGCTCTCTTT 731
Query 720 GTGGAAACTGATCTTAATAACTGGATCATCGTCTCATGGGAAGAGCTCTTCACCATCCTA 779
|||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 732 GTGGAAACTGATCTAAATAATTGGATCATCGTCTCTTGGGAAGAGCTCTTCACCATCCTA 791
Query 780 TACGCTGGAATAATAGCATCAGGGTTGGTGGTGTATCTTCAAACATGGTGTATTTACAAA 839
||||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct 792 TACGCCGGAATAATAGCGTCAGGGTTGGTGGTTTATCTTCAAACATGGTGTATCTACAAA 851
Query 840 AGCGGTCCAGTCTTTGTCGCTGTCTTCCAGCCTCTCCAGACACTTCTTGTTGCTGCAATG 899
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 852 AGCGGTCCAGTTTTTGTCGCTGTTTTCCAGCCTCTCCAGACACTTCTTGTTGCTGCGATG 911
Query 900 GCGTTTCTTATTCTTGGTGATCAGTTATACTCCGGAAGGATTGTTGGTGCAGTGTTCATA 959
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||
Sbjct 912 GCGTTTCTTATTCTTGGTGATCAGTTATACTCGGGAGGGATTGTTGGTGCAGTGTTTATA 971
Query 960 ATGCTAGGGCTCTACTTAGTTCTTTGGGGGAAAAACGAAGAAAGAAAACTGGTTCTTGAA 1019
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 972 ATGCTAGGGCTCTACTTAGTTCTTTGGGGCAAAAACGAAGAAAGAAAACTGGCTCTTGAA 1031
Query 1020 GAAAGTCAACAAGATCCAGAGTCATTGACCAAAAATCTACTTGAGGCACAACACCAGAAG 1079
|| ||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 1032 GAGAGTCAACAAGATCCAGAGTCACTGACCAAACATCTACTTGAGGCACAACACAAGAAG 1091
Query 1080 AGTATTTCTGAATCTGAAGTGTAAAAGTTTACACTGCTGCAAACATAACGCATTACTGCT 1139
|||| ||||||||||||||||||||||| |||||||||| ||||||||||| ||
Sbjct 1092 AGTAATTCTGAATCTGAAGTGTAAAAGT-------GCTGCAAACACAACGCATTACTTCT 1144
Query 1140 CTGTACATACACA--CAAGAACTTGTCCAACACACAGGCTCCTCAAGTGGGTCTCTCATA 1197
||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1145 CTGTACATACACATACAAGAACTTGGCCAACACACAGGCTCCTCAAGTGGGTCTCTCATA 1204
Query 1198 CAACTGATATTCTAGTCGTTTACTTTGGAGTTGTAATCAAAATTGGGTTGCAATTTATTT 1257
||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1205 CAATTGATATCCTAGTCGTTTACTTTTGAGTTGTAATCAAAATTGGGTTGCAATTTATTT 1264
Query 1258 ATGAATAAA--TGAAAAGATGATAACATTAAATCAAAGTTGACAATAGAAAAGC 1309
||||||||| |||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1265 ATGAATAAAAATGAAAAGATGGTAACATTAAATCAAAGTTGACAATAGAGAAGC 1318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64407299235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5