BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479316
Length=1709
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18210.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 2632 0.0
> AT3G18210.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr3:6237930-6240605
REVERSE LENGTH=1728
Length=1728
Score = 2632 bits (1425), Expect = 0.0
Identities = 1626/1719 (95%), Gaps = 29/1719 (2%)
Strand=Plus/Plus
Query 1 aaaaaaaTCTTCGAGGGAACATTCAGAAACCCTAACTTCAACGGGAACTCAAAAATCAGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27 AAAAAAATCTTCGAGGGAACATTCAGAAACCCTAACTTCAACGGGAACTCAAAAATCAGA 86
Query 61 ATCTCCAGATCGAGAGCTAAAAAAGCCGATTTCAATT-CTCTTTAAGATTCTGGGTTTTT 119
|||||||||||||||||| |||||| ||||||||||| | |||||||| | |||||
Sbjct 87 ATCTCCAGATCGAGAGCTTAAAAAGTCGATTTCAATTCCCCTTTAAGA---T---TTTTT 140
Query 120 GCTTTTGGAATGTAGTGTGAAGAAGAAACCCTAG-TTTTTCTCACTTGAATTCTCTAG-C 177
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
Sbjct 141 GCTTTTGGAATGTAGTGTGAAGAAGAAACCCTAGTTTTTTCTCACTTGAATTCTCT-GCC 199
Query 178 TTCTACAGTAATGTCAAGTGAGCAGCGAGAAGGTTCGCAGGAGACGACGACGACGACGGT 237
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 200 TTCTTTAGTAATGTCAAGTGAGCAGCGAGAAGGTTCGCAAGAGACGACGACGACGACGGT 259
Query 238 GGAAGGTAACGGAACAATTGGAGGTAACAATTCTCATTCGGTGGTTGCTGCGACATTGAG 297
|||||||||||||||||||| |||| | ||||||||||||| || | | ||||||||||
Sbjct 260 GGAAGGTAACGGAACAATTGCAGGTCAGAATTCTCATTCGGCGGCTCCCACGACATTGAG 319
Query 298 AGCTACCTCTACGATGGTTTCTTGCCAGAGACTAAGGCTAAACCCTAACAACGAGCATAG 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 AGCTACCTCTACGATGGTTTCTTGCCAGAGACTAAGGCTAAACCCTAACAACGAGCATAG 379
Query 358 ACCCGATAGTTACGAAGATCTGCAGCTTGATTTCCCAAACTCGGTATATTCTAGTCTCGA 417
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 380 ACCCGATAGTTATGAAGATCTGCAGCTTGATTTCCCAAACTCGGTATATTCTAGTCTGGA 439
Query 418 GAAGTACTTGCCTCCGAATATGCTGGTCTCCAATCGCGATGAGAAAATCAAGTTCATGAC 477
|||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||
Sbjct 440 GAAGTACTTGCCTCCGAATATGCTCGTCTCGAATCGTGATGAGAAAATCAAATTCATGAC 499
Query 478 TGACATTATGCTTAGGCATCTTCCTCATGGAGAGCGTTCTAGAGCGCAAAGGCACAGGGA 537
||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 500 TGATATTATGCTTAGGCATCTTCCTCATGGAGAGCGTTCCAGAGCTCAAAGGCACAGTGA 559
Query 538 CTATAGGCAGAAGATTATATCAAATTATCAGCCACTTCACAGGGAGTTGTATACTCTAGT 597
|||||||| |||||||| | ||||||||||||||||||||| ||||||||||||||||||
Sbjct 560 CTATAGGCTGAAGATTACAACAAATTATCAGCCACTTCACAAGGAGTTGTATACTCTAGT 619
Query 598 TCCCACAGTATGTTTCGTTCCCGCTTTCCTTAAGGCGATAAATGAAAGCACAGAGGAAAG 657
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 620 TCCCACAGTATGTTTCGTTCCTGCTTTCCTTAAGGCGATAAATGAAAACACAGAGGAAAG 679
Query 658 CTTCAGAAACATAATATCTGAACCGTCTCCTGGTGTTTTCGTCTTTGACATGCTCCAGCC 717
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 CTTCAGAAATATAATATCTGAACCGTCTCCTGGTGTTTTCGTCTTTGACATGCTCCAGCC 739
Query 718 TAGCTTTTGCGAGATGATGCTATCCGAGATAGACAATTTTGAAAGGTGGGTGGGTGAGAC 777
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 740 TAGCTTTTGTGAGATGATGCTAGCCGAGATAGACAATTTTGAAAGGTGGGTGGGTGAGAC 799
Query 778 CAAATTCCGGATAATGAGACCAAACACCATGAATAAATACGGCGCTGTGCTTGACGACTT 837
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 800 CAAATTCCGGATAATGAGACCAAACACCATGAATAAATACGGTGCTGTGCTTGACGACTT 859
Query 838 TGGTCTGGATACCATGCTTGACAAACTCATGGAGGGTTTTATACGTCCCATTTCTAAAGT 897
|||||| || |||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 860 TGGTCTAGACACCATGCTTGACAAACTCATGGAGGGGTTTATACGTCCCATCTCTAAAGT 919
Query 898 ATTCTTCAGTGATGTGGGTGGAGCATCTCTGGACTCTCACCATGGTTTTGTTGTTGAATA 957
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 920 ATTCTTCAGTGATGTGGGTGGAGCAACTCTGGACTCTCACCATGGTTTTGTTGTTGAATA 979
Query 958 TGGTAAAGATAGGGATGTTGATTTAGGCTTTCATGTGGATGATTCAGAAGTAACGCTGAA 1017
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 TGGGAAAGATAGGGATGTTGATTTAGGCTTTCATGTGGATGATTCAGAAGTAACGCTGAA 1039
Query 1018 TGTTTGTTTGGGTAATCAATTTGTGGGAGGGGAGCTATTTTTCAGAGGTACACGGTGTGA 1077
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1040 TGTTTGTTTGGGTAATCAATTTGTGGGAGGGGAGCTATTTTTCAGAGGCACACGGTGTGA 1099
Query 1078 AAAACATGTGAACACAGCAACAAAGGCAGATGAAATATTTGATTAT-GATCATATACCTG 1136
||||||||||||||||||||||||||||||||||| || ||||||| | |||||||||||
Sbjct 1100 AAAACATGTGAACACAGCAACAAAGGCAGATGAAACATATGATTATTG-TCATATACCTG 1158
Query 1137 GACAAGCTGTGCTTCACCGTGGGCGCCACCGCCATGGTGCCAGAGCCACAACATCCGGGC 1196
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1159 GACAAGCTGTGCTTCACCGTGGCCGCCACCGCCATGGTGCCAGAGCCACAACATGCGGGC 1218
Query 1197 ATCGGGTCAATATGCTACTATGGTGCAGAAGTTCTGTGTTTAGAGAGCTCAAAACTCATC 1256
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1219 ATCGGGTCAATATGCTTCTATGGTGCAGAAGTTCTGTATTTAGAGAGCTCAAAACTCATC 1278
Query 1257 AGAAGGAATTCTCCAGCTGGTGTGGAGAGTGCTTTTGTGAAAAGAGAGATGAGAAAGTGC 1316
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 ACAAGGATTTCTCCAGCTGGTGTGGAGAGTGCTTTTGTGAAAAGAGAGATGAGAAAGTGC 1338
Query 1317 GGTCGATTGATGCTCTAAGAAAGAAATTGTTTAAAGCACGTCAAACCCAAGCTTGATGGA 1376
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1339 GGTCGATTGATGCTCTAAGAAAGAAATTGTTTAAACCACGTCAAACCCAAGCTTGATGGA 1398
Query 1377 ACACTAGTAAGATGAGCAATGGATGAAACACTAGTAAGATAAGCAATAACATATATTGGA 1436
||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1399 ACACTAGCAAGATGAGCAATTGATGAAACATTAGTAAGATAAGCAATAACATATATTGGA 1458
Query 1437 TGACTTTAAAAGTTGAGATCAAGCTCTGAAGAATTGCTCTTGTTTTAAGCTGACTTAAAA 1496
|||| |||||| |||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1459 TGACATTAAAACTTGAGATCAAGCCCTGAAGAATTGCTCCTGTTTTAAGCTGACTTAAAA 1518
Query 1497 CTGAGCCTATGTAGAAATCATTTGAGGTATATGGGTCTCTGTTTATCTTTTCTCTGACTC 1556
|||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||
Sbjct 1519 CTGAGCCTATGTAGAAATCATTTGAGTTATATGGGTCTCTGTTTATCGTTTCTCAGACTC 1578
Query 1557 TTTGATAAAATTATGTACATGAAA---TCTAGTCTCAACTTCACTTGTAT--TACAAGGA 1611
||||||||||| |||||||||||| ||||||||||||||||||||| | ||||||||
Sbjct 1579 TTTGATAAAAT-ATGTACATGAAAGAATCTAGTCTCAACTTCACTTGTGTACTACAAGGA 1637
Query 1612 GTCATATTGTTATCCGAtttttgtttttttGTTTATTCTTTCTTATGAGTACAAGGAAGA 1671
||||||||||| |||||||||| ||| ||| ||||| |||||||||||||||||
Sbjct 1638 GTCATATTGTTGTCCGATTTTT-TTT----GTT----CTTTCATATGAGTACAAGGAAGA 1688
Query 1672 ATTGGTGTTATCTAATTGGATGTGGTGACT-CTGCTCTC 1709
||||||||||||||||||||| |||||| | ||||||||
Sbjct 1689 ATTGGTGTTATCTAATTGGATTTGGTGA-TGCTGCTCTC 1726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84487517235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5