BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479322
Length=1466
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18240.1 | Symbols: | Ribosomal protein S24/S35, mitochondr... 2152 0.0
AT4G21460.1 | Symbols: | Ribosomal protein S24/S35, mitochondr... 1905 0.0
> AT3G18240.1 | Symbols: | Ribosomal protein S24/S35, mitochondrial
| chr3:6255742-6258090 FORWARD LENGTH=1642
Length=1642
Score = 2152 bits (1165), Expect = 0.0
Identities = 1311/1379 (95%), Gaps = 19/1379 (1%)
Strand=Plus/Plus
Query 1 TCTCTGATCCGCCATGAGAGGAGCTCTCTTCAGAAATGCATCTCTCTGCGCTCGCAGAAT 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 56 TCTCTGATCCGCCATGAGAGGAGCTCTCTTGAGAAATGCATCTCTCTGCGCTCGCAGAAT 115
Query 61 CACTCTTTCTCCTCGTATAACCCATCAGATCTCCCCCAATCTTCCCTTTCTCGCTCCAAT 120
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 116 CATTCTTTCTCCTCGTATAACCCATCAGATCTCCCCCAATGTTCCCTTTCTCGCTCCAAT 175
Query 121 CGCCTCTCCAGCTCCTCTCAAATTCAGATTTTTCTCCTCCGAATCCGACTCGTCCGGTGA 180
|||| |||| ||| ||| ||| ||||||||||||||||||| | | ||||||||
Sbjct 176 CGCCGCTCCTGCTGCTCCCAAGTTCAGATTTTTCTCCTCCG-A----A----TCCGGTGA 226
Query 181 AAACTCGACTACTACCCCTGATTCTTCGCCGACTGAATC-CTCCGATAAGAAGGATCTCG 239
||||||||||| ||||||| |||||||||||||| || | |||| ||||| |||||||
Sbjct 227 GAACTCGACTACGGCCCCTGAGTCTTCGCCGACTGATTCAC-CCGAGAAGAAAGATCTCG 285
Query 240 TTGTAGAAGATGTAAGCAACAAAGAGCTTAAAAGCCGTATAGAGAAGTATTTCAATGAGG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 TTGTAGAAGATGTAAGCAACAAAGAGCTTAAAAGCCGTATAGAGAAGTATTTCAATGAGG 345
Query 300 GTAATGAAGATGCTTTACCTGGAGTTATTGAAGCACTTCTACAGAGAAGACTTGCT-GAC 358
||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||
Sbjct 346 GTAATGAAGATGCTTTACCCGGAGTTATTGAAGCACTTCTACAGAGAAGACTTG-TAGAC 404
Query 359 AAACACGCAGAGACTGATGATGAATTGATTG-AAAAAATCGAGACTTTACCTTTCAAAGA 417
||||||||||||||||||||||||||| ||| ||||||||||| || |||||||||||||
Sbjct 405 AAACACGCAGAGACTGATGATGAATTG-TTGGAAAAAATCGAGTCTCTACCTTTCAAAGA 463
Query 418 TGATGTCAAGGATGAAGATTTTGAATCGGATTTCGAGGAAGCCCATTCTACTGACGAAGA 477
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 464 TGATGTCAAGGATGAAGATTTTGAATCCGATTTCGAGGAAGCACATTCTACTGACGAAGA 523
Query 478 GCTTGAGGATTTGTACAACTCTCCCGAGTATGTAGCTGAAAAGATGAGGAAGAATGAATT 537
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 524 ACTTGAGGATTTGTACAATTCTCCCGAGTATGTAGCTGAAAAGATGAGGAAGAATGAGTT 583
Query 538 TTTCAACATGGACGATAAGAAGTGGGATCACATGATTAGAGAAGGCATCCAACATGGCTG 597
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 584 TTTCAACATGGATGATAAGAAGTGGGATCACATGATTAGAGAAGGTATCCAACATGGGTG 643
Query 598 TCTTACCGATACTAAGGAATGCGAGGAGATTCTTGAGGATATGCTCAAATGGGACCAGCT 657
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 TCTTACTGATACTAAAGAATGCGAGGAGATTCTTGAGGATATGCTCAAATGGGACCAGCT 703
Query 658 TCTTCCTGATGACTTGAAGAAAAAAGTTGAAGCAAAGTTTAATGAGCTTGGGGATATGTG 717
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 704 TCTTCCTGATGACTTGAAGAAAAAGGTTGAAGCAAAGTTTAATGAGCTTGGAGATATGTG 763
Query 718 TGAAAGAGGTGAACTTGAGGCTGAAGCAGCTTATGAGCTTTTCAAGGAATTTGAAGATGA 777
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 764 TGAAAGAGGTGAAATTGAGGCTGAAGCAGCTTATGAGCTTTTTAAGGAATTTGAAGATGA 823
Query 778 AATGGTAATTCAGTATGGGGATCAAATGGAAGCTGAGGGTCCTCCCCAATTTGGTGAAAC 837
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 824 GATGGTAATTCAGTATGGGGATCAGATGGAAGCTGAGGGTCCTCCCCAATTTGGTGAAAC 883
Query 838 AGATGCTTCCGATAGGAATACTGACTTGGATGATCCCCCCGGTAAAGGCCCAATCCTCAG 897
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 884 AGATGCTTCCGATAGGAATACTGACTTGGATGATCCCCCTGGTAAAGGCCCAATCCTCAG 943
Query 898 GTGGCAGTCAAGGATAGTTTTTGCTCCTGGAGGTGATGCGTGGCATCCAAAGAACAGGAA 957
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 GTGGCAATCAAGGATAGTTTTTGCTCCTGGAGGTGATGCGTGGCATCCAAAGAACAGGAA 1003
Query 958 AGTGAAAATGTCTGTTACAGTGAAAGAGCTCGGGCTCTCAAAGCATCAGGCTAAAAGGCT 1017
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1004 AGTTAAAATGTCTGTTACAGTGAAAGAGCTTGGGCTCTCAAAGCATCAGGCTAAAAGGCT 1063
Query 1018 AAGGGAACTTGTGGGGAAAAGATACCATTCGGGGAAAGACGAGCTTACAATCACCAGCGA 1077
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 AAGGGAACTTGTAGGGAAAAGATACCATTCGGGGAAAGACGAGCTTACAATCACCAGCGA 1123
Query 1078 AAGGTTTGAACACCGAGAGGAAAACAGGAAAGACTGCTTAAGAACTCTTTACGGGTTGAT 1137
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 GAGGTTTGAACACCGAGAGGAAAACAGGAAAGACTGCTTAAGAACTCTTTACGGGTTGAT 1183
Query 1138 AGAGGAAGCTGGGAAAGCCAACAAGATCGCTGAGGACATAAGAACTTCATATGTAAAACA 1197
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1184 AGAAGAAGCTGGGAAAGCCAACAAGATCGCTGAAGACATAAGAACTTCATATGTAAAACA 1243
Query 1198 GAGACTCCGAGCCAATCCAGCTTTTATGCAGAAACTACAAGCCAAGATCATAAGGTCTAA 1257
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1244 AAGACTCCGTGCCAATCCAGCTTTTATGCAGAAACTACAAGCCAAGATCATAAGGTCTAA 1303
Query 1258 AGAATCAGATGCCATCAACGCCTGAA-AAAGACTTTTCCCGATCCATGAA-AtttttttG 1315
||||||||||||||||||||| |||| ||| ||||||||||||||||||| | | ||| |
Sbjct 1304 AGAATCAGATGCCATCAACGCTTGAACAAA-ACTTTTCCCGATCCATGAAGAATCTTT-G 1361
Query 1316 ATGGTAACTCCTATTTTAGTTTGGTTTGCTTATTGTATCTCATGAAGACATGAACCTTG 1374
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1362 ATGGTAACTCCTATCTTAGTTTGGTTTGCTTGTTGTATCTCATGAAGACATGAACCTTG 1420
> AT4G21460.1 | Symbols: | Ribosomal protein S24/S35, mitochondrial
| chr4:11428510-11430732 FORWARD LENGTH=1610
Length=1610
Score = 1905 bits (1031), Expect = 0.0
Identities = 1213/1298 (93%), Gaps = 23/1298 (2%)
Strand=Plus/Plus
Query 1 TCTCTGATCCGCCATGAGAGGAGCTCTCTTCAGAAATGCATCTCTCTGCGCTCGCAGAAT 60
|||||| | | |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 8 TCTCTGGTACACCATGAGAGGAGCTCTGTTCAGAAATGCATCTCTCTGCGCTCGCAGAAT 67
Query 61 CACTCTTTCTCCTCGTATAACCCATCAGATCTCCCCCAATCTTCCCTTTCTCGCTCCAAT 120
|| ||||||| || | | ||||||||||||| ||||||||||| |||||||
Sbjct 68 CATTCTTTCT--TC---T-----A--GGATCTCCCCCAATGTTCCCTTTCTCACTCCAAT 115
Query 121 CGCCTCTCCAGCTCCTCTCAAATTCAGATTTTTCTCCTCCGAATCCGACTCGTCCGGTGA 180
|||| |||| ||||||| |||||||||| ||| | || | ||||| ||||||||
Sbjct 116 CGCCGCTCCGGCTCCTCCCAAATTCAGA--TTT-T--TCAG-TTCCGA---ATCCGGTGA 166
Query 181 AAACTCGACTACTACCCCTGATTCTTCGCCGACTGAATCCTCCGATAAGAAGGATCTCGT 240
|||||||||||| || |||| |||||||||||||| || ||||||||||||||||||||
Sbjct 167 GAACTCGACTACTGCCACTGAGTCTTCGCCGACTGATTCATCCGATAAGAAGGATCTCGT 226
Query 241 TGTAGAAGATGTAAGCAACAAAGAGCTTAAAAGCCGTATAGAGAAGTATTTCAATGAGGG 300
|||||| ||||| ||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 227 TGTAGAGGATGTCAGCAACAAAGAGCTTAAAAGCCGTATAGACAAGTCTTTCAATGAGGG 286
Query 301 TAATGAAGATGCTTTACCTGGAGTTATTGAAGCACTTCTACAGAGAAGACTTGCT-GACA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 287 TAATGAAGATGCTTTACCTGGAGTTATTGAAGCACTTCTACAGAGAAGACTTG-TAGACA 345
Query 360 AACACGCAGAGACTGATGATGAATTGATTGAAAAAATCGAGACTTTACCTTTCAAAGATG 419
|||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||
Sbjct 346 AACACGCAGAGACTGATGATGAATTGATGGAAAAAATCGAGAGTCTACCTTTCAAAGATG 405
Query 420 ATGTCAAGGATGAAGATTTTGAATCGGATTTCGAGGAAGCCCATTCTACTGACGAAGAGC 479
||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |
Sbjct 406 ATGTCAAGGATGAAGATTTTGAATCCGATTTCGAAGAAGCGCATTCTACTGACGAAGAAC 465
Query 480 TTGAGGATTTGTACAACTCTCCCGAGTATGTAGCTGAAAAGATGAGGAAGAATGAATTTT 539
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 466 TTGAGGATTTGTACAACTCTCCCGAGTATGTAGCTGAAAAGATGAGGAAGAAAGAATTTT 525
Query 540 TCAACATGGACGATAAGAAGTGGGATCACATGATTAGAGAAGGCATCCAACATGGCTGTC 599
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 526 TCAACATGGACGATAACAAGTGGGATCACATGATTAGAGAAGGTATCCAACATGGCTGTC 585
Query 600 TTACCGATACTAAGGAATGCGAGGAGATTCTTGAGGATATGCTCAAATGGGACCAGCTTC 659
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 586 TTACCGATACTAAACAATGCGAGGAGATTCTCGAGGATATGCTCAAATGGGACCAGCTTC 645
Query 660 TTCCTGATGACTTGAAGAAAAAAGTTGAAGCAAAGTTTAATGAGCTTGGGGATATGTGTG 719
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 646 TTCCTGATGACTTGAAGAAAAAAGTTGAAGCAAAGTTTAATGAGCTCGGGGATATGTGTG 705
Query 720 AAAGAGGTGAACTTGAGGCTGAAGCAGCTTATGAGCTTTTCAAGGAATTTGAAGATGAAA 779
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 706 AAAGAGGTGAAATTGAGGCCGAAGCAGCTTATGAGCTTTTCAAGGAATTTGAAGATGAGA 765
Query 780 TGGTAATTCAGTATGGGGATCAAATGGAAGCTGAGGGTCCTCCCCAATTTGGTGAAACAG 839
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 766 TGGTAATTCAGTATGGGGATCAGATGGAAGCTGAGGGTCCTCCCCAATTTGGTGAAACAG 825
Query 840 ATGCTTCCGATAGGAATACTGACTTGGATGATCCCCCCGGTAAAGGCCCAATCCTCAGGT 899
|| |||| || |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 826 ATACTTCTGACAGGAATACTGACTTGGATGATCCCTCCGGTAAAGGCCCAATCCTCAGGT 885
Query 900 GGCAGTCAAGGATAGTTTTTGCTCCTGGAGGTGATGCGTGGCATCCAAAGAACAGGAAAG 959
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 GGCAATCAAGGATAGTTTTTGCTCCTGGAGGTGATGCGTGGCATCCAAAGAACAGGAAAG 945
Query 960 TGAAAATGTCTGTTACAGTGAAAGAGCTCGGGCTCTCAAAGCATCAGGCTAAAAGGCTAA 1019
| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 946 TTAAAATGTCTGTTACAGTGAAAGAGCTTGGGCTCTCAAATCATCAGGCTAAAAGGCTAA 1005
Query 1020 GGGAACTTGTGGGGAAAAGATACCATTCGGGGAAAGACGAGCTTACAATCACCAGCGAAA 1079
||||||||||||| |||||||||||||| |||||||| ||||||||||||||| |||| |
Sbjct 1006 GGGAACTTGTGGGAAAAAGATACCATTCAGGGAAAGATGAGCTTACAATCACCTGCGAGA 1065
Query 1080 GGTTTGAACACCGAGAGGAAAACAGGAAAGACTGCTTAAGAACTCTTTACGGGTTGATAG 1139
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1066 GGTTTGAACACCGAGAAGAAAACAGGAAAGACTGCTTGAGAACTCTTTACGGGTTGATAG 1125
Query 1140 AGGAAGCTGGGAAAGCCAACAAGATCGCTGAGGACATAAGAACTTCATATGTAAAACAGA 1199
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1126 AGGAAGCTGGGAAAGCCAACAAGATCGCTGAAGACATAAGAACTTCATATGTAAAACAGA 1185
Query 1200 GACTCCGAGCCAATCCAGCTTTTATGCAGAAACTACAAGCCAAGATCATAAGGTCTAAAG 1259
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 GACTCCGAGCCAGTCCAGCTTTTATGCAGAAACTACAAGCCAAGATCATAAGGTCTAAAG 1245
Query 1260 AATCAGATGCCATCAACGCCTGAAAAAGACTTTTCCCG 1297
||||| ||||||||||||| ||||||| ||||||||||
Sbjct 1246 AATCAAATGCCATCAACGCTTGAAAAAAACTTTTCCCG 1283
Score = 111 bits (60), Expect = 1e-23
Identities = 78/86 (91%), Gaps = 3/86 (3%)
Strand=Plus/Plus
Query 1290 TTTTCCCGATCCATGAA-AtttttttGATGGTAACTCCTATTTTAGTTTGGTTTGCTTAT 1348
|||| | |||| ||||| | | ||||||||||||||||||||||||||||||||||| |
Sbjct 1360 TTTT-CAGATCGATGAAGA-ATCTTTGATGGTAACTCCTATTTTAGTTTGGTTTGCTTCT 1417
Query 1349 TGTATCTCATGAAGACATGAACCTTG 1374
||||||||||||||||||||||||||
Sbjct 1418 TGTATCTCATGAAGACATGAACCTTG 1443
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72288784800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5