BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479323
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18250.1 | Symbols: | Putative membrane lipoprotein | chr3:... 403 4e-112
> AT3G18250.1 | Symbols: | Putative membrane lipoprotein | chr3:6258067-6258417
REVERSE LENGTH=351
Length=351
Score = 403 bits (218), Expect = 4e-112
Identities = 262/283 (93%), Gaps = 3/283 (1%)
Strand=Plus/Plus
Query 1 AGAACGAGAGATGGCGAGACACTTATTAGATGATGTAATGAGCATGGCCACCACAACAAC 60
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 AGAAAGAGAGATGGCGAGACACTTATTAGAAGATGTAATGAGCATGGCCACCACAACAAC 60
Query 61 ACATTTCGATGCTAGTTACCTATTTCATGTTGTCTTCTTGGCTGTGATCGGTTGTTGTAT 120
||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||
Sbjct 61 ACATTTCGATGCTAGTTACCTGTTTCATGTTGTGTTCCTGGCTGTGATCGGTTGTTGTAT 120
Query 121 CCTCTCGGCTCTGTTATTCTCGTGTGCCGATGGAGCCTCCGACAACAGAGCCACTTCCGG 180
|||||| |||||||||||||| |||||||| |||| ||||||||||||||||||||| ||
Sbjct 121 CCTCTCCGCTCTGTTATTCTCTTGTGCCGACGGAGTCTCCGACAACAGAGCCACTTCAGG 180
Query 181 AAACTCTACCGGTGGCGGAGGTTGTGGCGGTGCAGGTTGCGGAGGTGGTTGTGG---TTG 237
| |||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 181 CACCTCTACCGGTGGCGGAGGTTGTGGCGGTGCCGGTTGCGGTGGTGGTTGTGGAGGTTG 240
Query 238 AGAATTCATTTGTCTTCGTCGGGAAAATAAAAACAGAACAGTC 280
||| ||||||| |||||||| |||||||| |||||||||||||
Sbjct 241 AGATTTCATTTTTCTTCGTCAGGAAAATATAAACAGAACAGTC 283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12868543744
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5