BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479324
Length=838
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18260.1 | Symbols: | Reticulon family protein | chr3:62602... 1190 0.0
> AT3G18260.1 | Symbols: | Reticulon family protein | chr3:6260241-6261591
REVERSE LENGTH=852
Length=852
Score = 1190 bits (644), Expect = 0.0
Identities = 775/836 (93%), Gaps = 17/836 (2%)
Strand=Plus/Plus
Query 13 TTACA-T-ATTTCATTGTTGTTT-TTACCGTAAAAACTTTTATCTTAATAAATTTCATCT 69
||||| | ||||||||||||||| |||||| | ||||||||||||||||||||| |||
Sbjct 24 TTACATTCATTTCATTGTTGTTTCTTACCGCAGTAACTTTTATCTTAATAAATTTGATCC 83
Query 70 AATCATGCCAATATTTACGGGATC-T--TCCGATTCTGAAGACGAAAGAACGATCCATAA 126
|| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 84 AACCATGCCAATATTTACGGGATCGTCCTCCGATTCTGAAGACGAAAGAACGATCCATAA 143
Query 127 AACAACTAAGCTCTTCACTCGTCAACGATCGATTCACTCTATATTTGGAGGTGGTAAAGT 186
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 144 AACAACTAAGCTCTTCACTCGTCAACGATCTATTCACTCTATATTTGGAGGTGGTAAAGT 203
Query 187 TGCAGATATTTTATTATGGAGAGAGCCGAAAACAGCAGCAACATTGGTGATAGGAGTGAG 246
||| |||||| | ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 204 TGCGGATATTCTGTTATGGAGAGAGCCGAAAATAGCAGCAACATTGGTGATAGGAGTGAG 263
Query 247 CCTCTTATGGTTCTTAATGGAAGTAGTGGGATACAATTTCATAACCCTAATTTGTCATGC 306
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 264 CATCTTATGGTTCTTAATGGAAGTAGTGGAATACAATTTCATAACCCTAATTTGTCATGC 323
Query 307 TTCCATGACCTCCATGCTTCTTTTCTTCATTTGGTCCACTGCTTCTGATTTTCTCAACTG 366
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct 324 TTCCATGACCTCCATGCTTTTTTTCTTCATTTGGTCTACTGCTTCTGATTTTCTCAATTG 383
Query 367 GGAAAGGCCAATAATACCAGAAGTGGTACTAGACGAATCTTCTTTCAAACAATTAACAAG 426
|||||| ||| ||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 384 GGAAAGACCACTAATACCAGAAGTTGTACTAGACGAATCTTCTTTCAAACAATTAGCAAG 443
Query 427 AAGCTTTCATGTTAGATTCAACCAAATCTT-AGCGAAGCTTCTTGACATTGCTTGTGGAA 485
|||||| ||||||||||||||||||||| | | | |||||||||||| ||||||||||||
Sbjct 444 AAGCTTCCATGTTAGATTCAACCAAATCCTCA-CAAAGCTTCTTGACGTTGCTTGTGGAA 502
Query 486 GAGATCCTCCACTCTTTTTCCTCACATTGGGTACCATCTCACTCTATATCCTATCCATCA 545
|||||||||| |||||||| |||||| || ||||| || |||||| |||||||||
Sbjct 503 GAGATCCTCCTCTCTTTTTTCTCACA------ACGATCTCGCTTTATATCGTATCCATCA 556
Query 546 TCGGGACATATTTCAACTTTGTGAATTTTCTGTTCTTAGGGTTTGTAAGCATGCACACCT 605
|||||||||||||||||||||||||| |||| ||| ||||||||||||||||||| ||||
Sbjct 557 TCGGGACATATTTCAACTTTGTGAATCTTCTCTTCATAGGGTTTGTAAGCATGCAAACCT 616
Query 606 TACCGGTTATGTATGAGATGTACGAGGACGACGTGGATAGAGTGGCGGGTAAATGGATGA 665
||||||||||||||||||||||||||||||||||||||| || ||||||||| | |||||
Sbjct 617 TACCGGTTATGTATGAGATGTACGAGGACGACGTGGATACAGCGGCGGGTAAGTTGATGA 676
Query 666 GGAAGATGAAGAAGCTGTACAAGAAAGTCGATTTGAATGTTCTTAGTAAAATCCCAAGAG 725
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 677 GGAAGATGAAGAAGCTGTACAAGAAAGTCGATACGAATGTTCTTAGTAAAATCCCAAGAG 736
Query 726 GAACTGTCAAGAACAAGAAATTTACTTAATTCTGATCATTGTTTACTTATAGAGATAATA 785
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 737 GAACTGTCAAAAACAAGAAATTTACTTAATTCTGATCATTCTTTACTTATAGAGATAATG 796
Query 786 TGATTGCTACTGTATTTATGCGACCTCA--A-CCCAAATTAATATACATATCTGTT 838
|| ||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 797 TGTTTGCTACTGTATTTATGCGACCTCATCAACCCAAATTAATATACATATCTGTT 852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40840361511
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5