BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479325
Length=1502
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18270.1 | Symbols: CYP77A5P | cytochrome P450, family 77, s... 2045 0.0
> AT3G18270.1 | Symbols: CYP77A5P | cytochrome P450, family 77,
subfamily A, polypeptide 5 pseudogene | chr3:6261905-6264309
FORWARD LENGTH=1622
Length=1622
Score = 2045 bits (1107), Expect = 0.0
Identities = 1399/1533 (91%), Gaps = 47/1533 (3%)
Strand=Plus/Plus
Query 1 ATGTTTTCGATCGTATC-T--TCTTCTTCTT--C-ACTCGTCAATTCAACTCTAAATATC 54
||||||||||| |||| | |||||||||| | |||||||||||||||||| ||| ||
Sbjct 106 ATGTTTTCGATTTTATCATCATCTTCTTCTTCACAACTCGTCAATTCAACTCTCAATTTC 165
Query 55 CAAAATTCGCCGAAATCTCCGATCTCCGTTATGTCGGCGACGTCTAAATTCAAAACCCTA 114
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 166 CAAAATTCGCCGAAATCTCCGATCACCGTTATGTCGAAGACGTCTAAATTCAAAACCCTG 225
Query 115 ACGGAGAATTTCACCGTGAGAGTGCTTAAAGCAGAGAATCGCGAACTGAACGTGCCTCTG 174
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 226 ACGGAGAATTTCACCGTGAGAGTGCTTAAAGCAGAGAATCGCGAACTGAACGTGGCTCTG 285
Query 175 CTCTCACCTTTCACTATCGCTTCTTCACGGCTTGATTCAGTCAATAACGTTGCGATTCGG 234
|||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||
Sbjct 286 CTCTCACCTTTCACTATCGCTTCTTCACGGCTTGATTCTGTCAGTAATGTTGCGATTCGG 345
Query 235 ATTGAGCTTAGCGATGGGTGTGTCGGTTGGGGAGAAGCTCCGATTTTGCCGTCGGTAACG 294
|||||||| | |||||| | ||| ||||||||||||||||||||||||||||||||||||
Sbjct 346 ATTGAGCTCAACGATGGATTTGTGGGTTGGGGAGAAGCTCCGATTTTGCCGTCGGTAACG 405
Query 295 GCGGAGGATCAGATAACGGCCATGGTAAAAGCGCGGGAAACTTGTGAGTTTCTGAGAGAG 354
|||||||||||||||| ||| |||||||||||||||||| || |||||||||||||||||
Sbjct 406 GCGGAGGATCAGATAATGGCTATGGTAAAAGCGCGGGAAGCTAGTGAGTTTCTGAGAGAG 465
Query 355 TTACCGGAGATGAAACTTGGTAATGCTCTTAAGGAGATCGAAAGATTTCTCCCTGGTCAT 414
||||||||||||||||| ||||||| |||| ||||||||| ||||||||| |||||||||
Sbjct 466 TTACCGGAGATGAAACTCGGTAATGTTCTTCAGGAGATCGGAAGATTTCTTCCTGGTCAT 525
Query 415 CAATTTGCTTCTATAAGAGCTGGGATGGAGATGGCTATGATTGATGCAGCAGCAAAGAGT 474
|| ||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 526 CAGTTTGCTTCTGTAAGAGCTGGGATGGAGATGGCTATGATTGATGCAGCTGCTAAGAGT 585
Query 475 GTAGGAATGCCATTGTGGAAACTATTTGGTGGAGCTTCAAGTATTATTACTACCGACATT 534
||| || |||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 586 GTAAGAGTGCCATTGTGGAAACTATTTGGTGGAGCTTCAAGTACGATTACTACAGACATA 645
Query 535 ACAATTCCTATAGTTTCTCCGGAGGAAGCGTC--TACTTTGGCTTCAAAGTATAGAAAAC 592
|||||||| ||||||||||||| ||||| || || || ||| ||||||||||||||||
Sbjct 646 ACAATTCCGATAGTTTCTCCGGCTGAAGCTTCCGTA-TT-GGCCTCAAAGTATAGAAAAC 703
Query 593 GAGGTTTTGAAACCTTGAAGCTCAAGGTCGGGAA-GAATCTTAAGGCTGACGTAGAAGTT 651
|||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||
Sbjct 704 GAGGTTTTGAAACCTTGAAGCTCAAGGT-GGGAAAGAATCTTAAGGCTGACATAGAAGTT 762
Query 652 CTCCAGGCTATACGTGCAGTCCACCCTACTTGTTCCTTTATTTTGGATGCAAATGAGGGT 711
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 763 CTCCAGGCTATACGTGCAGTCCACCCTACTTGTTCCTTCATTTTGGATGCCAATGAGGGT 822
Query 712 TATCAAACAGAGGAAGCTGTTAGAGTTCTTGAGACGCTGCATGAAATGAAGGTTACACCG 771
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 823 TATCAAACAGAGGAAGCTGTTAAAGTTCTCGAGACGCTGCATGAAATGAAGGTTACACCG 882
Query 772 GTCCTCTTTGAACAACCCGTCCACAGAGACAATTGGGAAGGTCTCAGTCACGTGACTCGA 831
|| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 883 GTTCTCTTTGAACAACCTGTCCACAGAGACAATTGGGAGGGTCTCAGTCACGTGACTCGA 942
Query 832 ACTGCAAAAAACAGATTCGGAGTCTCTGTTGCAGCAGATGAGAGTTGCAGAGGCTTGACT 891
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 943 ACTGCAAAGAACAGATTCGGAGTCTCTATTGCAGCAGATGAGAGTTGCAGAGGCTTGACT 1002
Query 892 GATCTCAAGAAAATCATAGAAGGTGGTATCGTAGATGTTGTTAACATCAAACTCGCGAAA 951
|||||||| ||||||||||||||| ||||||||||||||| |||||||||||||| |||
Sbjct 1003 GATCTCAAAAAAATCATAGAAGGTAATATCGTAGATGTTGTGAACATCAAACTCGCCAAA 1062
Query 952 ACCGGAATCCTCGAGGCCCTTGAGGTAATTGAATTGGCTA-AGTCATCTGGAATTGAGCT 1010
||||||||||||||| | |||||||||||||||||||||| | |||||||| ||||||||
Sbjct 1063 ACCGGAATCCTCGAGTCTCTTGAGGTAATTGAATTGGCTAGA-TCATCTGGCATTGAGCT 1121
Query 1011 AATGATGGGGGGAATGGTGGAGACTAGATTAGCAATGGGGTTCTCCGGTCACGTTGCTGC 1070
||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1122 TATGATAGGGGGAATGGTGGAGACTAGATTAGCAATGGGGTTCTCTGGTCACCTTGCTGC 1181
Query 1071 TGGCCTTGGATGTTTCAGATTCATCGACTTGGACACTCCGCTTCTTCTGTCTGATGATCC 1130
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1182 TGGCCTTGGATGCTTCAGATTCATCGACTTGGACACTCCGCTTCTTCTGGCTGATGATCC 1241
Query 1131 AGTTCAAGGTGGCTACAAAGCTTGGGGCGCTGTCTACGAGTTTAACGATGAAGGCGGTCA 1190
||||||||||||||||||||| || || |||||||| |||||||| ||||||||||||||
Sbjct 1242 AGTTCAAGGTGGCTACAAAGCATGTGGTGCTGTCTATGAGTTTAAAGATGAAGGCGGTCA 1301
Query 1191 CGGAGGATATCTTCAGTGGAATGATGTTGCGT-AGTGAAATTCCTTCAGTCTACTTAGGT 1249
|||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||
Sbjct 1302 CGGAGGATATCTTCAGTGGAATGATGTTGC-TCAGTGAAATTCCTTTTGTCTACTTAGGT 1360
Query 1250 CCCTTTTCTTTTG---AA--G--TTT-AAT-GTT-G---A-T-TT--T---GGGTTTTGG 1289
||||||||||||| || | ||| ||| || | | | || | ||||||||
Sbjct 1361 CCCTTTTCTTTTGTTCAATAGGATTTTAATCGTAAGTTTAATGTTGGTTTTGGGTTTTGT 1420
Query 1290 AAAGGCTAATCTTGGTCCTAAATTCTCAGTATGTGTTAGTTGAGAGTGTATGTAATATAC 1349
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1421 AAAGGCTAATCTTGGTCCTAAATTCTCAGTATGTGTTAGTTGAGAGTGTATGTAATCTAG 1480
Query 1350 AAGCTTTGTAATTTCAGCCCCAGGGAGTAGCAAATAAATGTAGGAAATTCATTACACTGA 1409
|| |||||||| ||||||||||||||||| | ||| |||| ||| ||||||||| |||
Sbjct 1481 AATCTTTGTAACTTCAGCCCCAGGGAGTA--A--TAAGTGTATGAA-TTCATTACAGTGA 1535
Query 1410 TCTTGATTGATATCTGTCTGAAacacacacacaacacaGGTCTAATTCACAGAGCTTGTT 1469
||| | ||||||||||||||||||||||| ||| || ||||||| ||||||||||| |
Sbjct 1536 TCT-GCTTGATATCTGTCTGAAACACACA-ACA-CA--GGTCTAAGTCACAGAGCTTATA 1590
Query 1470 ATAGATCACAATTAAGTGCTTCTTGTTTCGATC 1502
|||||||||||| | ||| ||||||||||||||
Sbjct 1591 ATAGATCACAAT-ATGTGATTCTTGTTTCGATC 1622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74096004420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5