BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479330
Length=2705
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18310.1 | Symbols: | unknown protein; Has 30 Blast hits to... 3805 0.0
AT2G05171.1 | Symbols: | Pseudogene of AT3G18310 | chr2:187404... 536 4e-151
> AT3G18310.1 | Symbols: | unknown protein; Has 30 Blast hits
to 30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:6284356-6287144 REVERSE
LENGTH=2789
Length=2789
Score = 3805 bits (2060), Expect = 0.0
Identities = 2449/2634 (93%), Gaps = 37/2634 (1%)
Strand=Plus/Plus
Query 6 GATTACCGATGAATGGGGACGCAAACTCTGCATCTCCTCCTCTCCCGAAGAATCCATTGG 65
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 45 GATTACCGATGAATGGGGACGCAAACTCTGCATCACCTCCTCTCCCGAAGAATCCATTGG 104
Query 66 TCCTTtcttctcgaacccgtcagattctcagcttctcttctcttctccctcactctctcc 125
|||||||||||||||||| ||||| || ||||| ||||||||||||||||||||||||||
Sbjct 105 TCCTTTCTTCTCGAACCCATCAGACTCGCAGCTGCTCTTCTCTTCTCCCTCACTCTCTCC 164
Query 126 tccgattctctctactatccctcacttctctcccgcgcgttttctctccgtctccgGCGT 185
||| |||||||||| || ||||||||| |||||||||||||||||||||||||||||||
Sbjct 165 TCCAATTCTCTCTATTACCCCTCACTTAACTCCCGCGCGTTTTCTCTCCGTCTCCGGCGT 224
Query 186 CCCTCCGTCGGATTCTTCCGCAATCCATTCCTCTTTCAATA-TTCTCAATCCGCACGATG 244
||||||||||||||||||||||||| |||||||||| || | ||| ||||||||||||||
Sbjct 225 CCCTCCGTCGGATTCTTCCGCAATCAATTCCTCTTTTAAAATTTC-CAATCCGCACGATG 283
Query 245 ATACCGCTAGGGTTCTCTCCTACAATCGCCTCCAGTTTCTACCTTTCCCCAGTAAAAATT 304
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 ATACCGTTAGGGTTCTCTCCTACAATCGCCTCCAGTTTCTACCTTTCCCCAGTAAAAATT 343
Query 305 CAGTCTTGGTGTTTTTCCCCACAGGGACTAATCTTGATCAAATTGGGTTCTTGCTGCTTT 364
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 344 CAGTCTTGGTGTTTTTCCCCACAGGGACTAACCTTGATCAAATTGGGTTCTTGCTGCTTT 403
Query 365 CT-ACCGGAGATTCCGGTGGTTTACAAGTCACGGGTTCAGACGAAGGTGACGTCTTTGTG 423
|| | |||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 404 CTTAT-GGAGATTCCGGTGGTTTACAAGTCACGGGTTCGGACGAAGGTGACGTTTTTGTG 462
Query 424 GCAACAGAGAGATTATTTTCTCGAATTTTGAAGATTTTGGTGCAACCTGTTAGTGATTTT 483
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 463 GCAACAGAGAGATTGTTTTCTCGAATTTTGAAGATTTTGGTGCAACCTGTTAGTGACTTT 522
Query 484 GGAGCGTATAAGTGTTCTTCTTCT--GG-CGAATTGGGATACGTTTTGGTTCATT-GTTT 539
|||||||||||||||||||||||| || ||| |||||||||||||||||| ||| |||
Sbjct 523 GGAGCGTATAAGTGTTCTTCTTCTTCGGGCGAGTTGGGATACGTTTTGGTTTATTCGTT- 581
Query 540 GTATTCGATTCATTGGTACTGTGTCAAGTATGATGAATCTCAAGGTAAGCCGGTTTTGAG 599
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 582 GTATTCGATTCATTGGTACTGTGTCAAGTATGATGAGTCTCAAGGTAAGCCGGTTTTGAG 641
Query 600 AAACTTGGGGTCTAAGCAGTTTAAGAGGTTTATGATTGTAAGCGCTTCTTGGAGCCCTCA 659
|||| | || | ||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 642 AAACCTCGGATGTAAGCAGTTTAAGAGGTTTGTGATTGTGAGCGCTTCTTGGAGCCCTCA 701
Query 660 TGTTACTGGAGAGTGTCTACTCTTGTTAGACAACGGTGAGGTCTTTGTGTTTGATTTGAA 719
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 702 TGTTACTGGAGAGTGTCTACTCTTGTTAGATAACGGTGAGGTCTTTGTGTTTGATTTGAG 761
Query 720 TCAGAGACATTGTAGACTTAGAGGTTGCAAACTGAAAGTTTCTTGGGAGAGTCAAGGGAA 779
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 TCAGAGACATTGTAGAGTTAGAGGTTGCAAACTGAAAGTTTCTTGGGAGAGTCAAGGGAA 821
Query 780 ATCAGTGAATAAGAGTTGGTTAGGGTGTGAATTTGGTTGGAGAGTTGGGATTTATATCGT 839
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 822 ATCAGTGAATAAGAGTTGGTTAGGATGTGAATTTGGTTGGAGAGTTGGGGTTTATATCGT 881
Query 840 TGCTCGGTCTGATGCAGTCTTTGTTATTACCAGAAGCTCTGAGAATTGCAGTGTGAGATG 899
|||||||||||||||| | ||||||||| || |||| ||||| ||||||||||||||||
Sbjct 882 TGCTCGGTCTGATGCACTATTTGTTATTGTCAAAAGCACTGAGGATTGCAGTGTGAGATG 941
Query 900 TTTATTGGAATTTGAGACTCTGAATATGGCTGGAACAGAAGTGTTTGTTAGGTTTGCAAA 959
|||||||||| |||||| |||||||| ||| ||| |||||||||||||| ||||||||||
Sbjct 942 TTTATTGGAAGTTGAGAGTCTGAATACGGCCGGAGCAGAAGTGTTTGTTGGGTTTGCAAA 1001
Query 960 GGCGGGTAGTGACGGTTTTCGGTTTATTCTTGCTTCCCAGAGCAATGTATTTCTTTGTGA 1019
||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||
Sbjct 1002 GGCGGGTAGTGACGGTTTTCGGTTTGTTCTTGCTTCCCAGAGCTATGTATTTCTCTGTGA 1061
Query 1020 TCCGAGATCAGGAGTACCCTTGTTGAAATGGCAGCATGATGTTGAGAAGCCTTGCTTTAT 1079
| |||||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 TGCGAGATCAGGTGTGCCTTTGTTGAAATGGCAGCATGATGTTGAGAAGCCTTGCTTTAT 1121
Query 1080 GGATGTTTATAGCTTGTCTGAACTCGGAGTTAGGACCGTTGAATCAAATACTTCTTGCGT 1139
|||||| ||||||||||||||||| ||||||||||| ||||||| |||||||||||| |
Sbjct 1122 GGATGTCTATAGCTTGTCTGAACTTGGAGTTAGGACTTTTGAATCGAATACTTCTTGCCT 1181
Query 1140 CATAATTGGGTCGTTTTGGAATGCACAATCTCAAATGTTCTGTTATGGACCTTCTCCTTC 1199
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1182 CATAATAGGGTCGTTTTGGAATGCACAATCTCAAATGTTCTGTTTTGGACCTTCTCCTTC 1241
Query 1200 TGTTGTGAAGGATCCTTCTTCCTTGTATGTATGGGAGCTTCCACACAATCTACTCTTACC 1259
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 TGTTGGGAAGGATCCTTCTTCCTTGTATGTATGGGAGCTTCCACACAATCTACTCTTACC 1301
Query 1260 TGTTGGAAAGTGTCTATGCGGAGATTGTGTATTTAGAGAAGTAATGATGAAGGAGTCTCT 1319
||| |||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||
Sbjct 1302 TGTCGGAAAGTGTCTATGCGGAGATTGTCTATTTAGAGAAGTGATGATTAAGGAGTCTCT 1361
Query 1320 TCCCGAGTGGATCGATTGGCAGAAAAAGAGTGTTCTTGTTCTCGGTTTTGGTGTTTTAAA 1379
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1362 TCCCGAGTGGATTGATTGGCAGAAAAAGAGTGTTCTTGTTCTCGGTTTTGGCGTTTTGAA 1421
Query 1380 CAAGTACCTTCCACTTGGGTCATCAGATCAATCTTCCGGGTTTACTTTGATTC-GGTTAA 1438
||||||||||||||||||||| |||||||||||||| |||||||||||||| | ||||||
Sbjct 1422 CAAGTACCTTCCACTTGGGTCGTCAGATCAATCTTCGGGGTTTACTTTGAT-CAGGTTAA 1480
Query 1439 CATCCTCCGGTAAGCTTGAAGCAGTCAAGTTTCGAGCTTCTCGTTTAAAA-AGCTTAGAA 1497
||||||| || |||||||||||||||||||| || ||||||||||||||| | ||||||
Sbjct 1481 CATCCTCAGGGAAGCTTGAAGCAGTCAAGTTCCGTGCTTCTCGTTTAAAACAT-TTAGAA 1539
Query 1498 GTAGTAGCTCACAAAGATTCGGCCTGCAAATCCGACGAGGTGAACTTACTGTACCTCCCT 1557
|||||||||||||||| |||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 1540 GTAGTAGCTCACAAAGGTTCGGCTTGCAAATCCGATGAGGTGAATTTACTGTACCTCCCT 1599
Query 1558 GATGACGAGGAATACAAATTCCCAAGTCGATATGAA-TATCTCGAACTCAACTATCTCTC 1616
||||||||||||||||||||||| || || | | || |||||||||||| | ||||||||
Sbjct 1600 GATGACGAGGAATACAAATTCCCGAGACGTTTT-AACTATCTCGAACTCGAGTATCTCTC 1658
Query 1617 TTCTCAC-GCAAAAGGGATGCTCGCTGGGTTTTTAGATACAAAGATGAGGACAAAATCAT 1675
| ||||| | |||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1659 TGCTCACAG-AAAAGGGATGCTCGCTGGGTTTTTAGATTCAAAGATGAGGACAGAATCAT 1717
Query 1676 CGGATTTGCA-GAAGAGTAAATCTTTCAGCTTAATCTGGCACGAGGAGTTATGTAAGAAG 1734
| ||||| || ||||||| ||||||| ||||||||||| || || |||||||||||||||
Sbjct 1718 CAGATTT-CAAGAAGAGTGAATCTTTTAGCTTAATCTGCCATGAAGAGTTATGTAAGAAG 1776
Query 1735 TTGAAGATTTGCGGATTTGGTAGAGACAGATCTTCCTCTAGCATAACCGCAGTCTTTGAG 1794
|||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||
Sbjct 1777 TTGAAGATTTGCGGATTTGGTAAAGGCAGATCTGCCTCTAGCATAACCGCAGTCTTTGAG 1836
Query 1795 AATATCGATTCACCGACAAGCGTTTTCGACATTGCATTGAGAGAAACCTGGTCAAGCTTA 1854
|||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1837 AATATCAATTCACCCACAAGTGTTTTCGACATTGCATTGAGAGAAACCTGGTCAAGCTTA 1896
Query 1855 CCTATAGAGATTTTGTTGCTTGCATTCTCCAACTACTCTGAGTTTGCAGATGTTCTGGTA 1914
|||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1897 CCTAAAGAGATTTTGATGCTTGCATTCTCTAACTACTCTGAGTTTGCAGATGTTCTGGTA 1956
Query 1915 GACAAGAAAAAACCGTCTCTCGAGTTCTTAGTTGTTCCAGAATTCCCACAGTTACCACCT 1974
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1957 GACAAGAAGAAACAGTCTCTCGAGTTCTTAGTTGTTCCAGAATTCCCACAGTTACCGCCT 2016
Query 1975 TTCGTGTTAAGGAAACCTTCAAGCCGGAGTAACAAATGGTCAAAGAAGGAGCAACCCGGT 2034
||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2017 TTCTTGTTAAGGAATCCTTCAAGCCGGAGTAGCAAATGGTCAAAGAAGGAGCAACCCGGT 2076
Query 2035 GTTGAGCTTGTTGGCCCTGTTCTTCCACTTCCAGTTCTCATCACACTCCATGAGTTCCGT 2094
|||||| | ||||| |||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 2077 GTTGAGGTCGTTGGTCCTGTTGTTCCACTTCCAGTTCTCATCACACTCCATGAGTTCCAT 2136
Query 2095 AACGGATGTCTCAATTCAGAACAAGAGTTCTCGCCTGAAGCAGAGTTATCTAACCGATGC 2154
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 2137 AACGGATGTCTCAATTCAGAACAAGAGTTCTCGCCTGAAGCAGAGTTCTATAACCGATGC 2196
Query 2155 AATCAAATCTCCAAAGTAACCCGCGAGCTTGCAAACTCAGGTCGAGACGAGACAACCATT 2214
|||||||||||||||| |||||| || | ||||||||||||||| ||||||||||||||
Sbjct 2197 AATCAAATCTCCAAAGCCACCCGCCAGATCGCAAACTCAGGTCGACACGAGACAACCATT 2256
Query 2215 TCACTTGACGATGACCTAGACGATAAAATGTGGCTCAACAGTGATTCACAGAAGGAGAAA 2274
||||||||||| |||| || |||| |||||||||||||||||||||||||| ||||||||
Sbjct 2257 TCACTTGACGAAGACCGAGCCGATGAAATGTGGCTCAACAGTGATTCACAGGAGGAGAAA 2316
Query 2275 AAGACGTTCATTGCTTATCGTCCGATCACAAAGACAGCTGATTCAGACAGACTACAGCAA 2334
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 2317 AAGACGTTCATTGCTTATCGTCCGATAACAAAAACAGCTGAATCAGACAGACTACAGCAA 2376
Query 2335 GAAGTCACTACGTTTGTCTCCAGAATGCGTCGTTGTAAAGAAGGTGATGATAATGCTGGA 2394
|||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||| |
Sbjct 2377 GAAGTCACAACGTTTGTCTCCAGAATACGTGGTTGTAAAGAAGGTGATGATAATGCTGTA 2436
Query 2395 GGAAGAACAGGGCTTGAACTGTTCGATGAGTTGTCTCCGGTCGAGAT-TTGCTTCGAAAA 2453
||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 2437 GGAAGAAGAGGGCTTGAACTGTTCGATGAGTTGTCTCCGGTCGAGATGTT-CTTCGAAAA 2495
Query 2454 TCGGGAAGTGAATTTCGACA----C--TA--AA-GCTTTGCTAACTTCCAAGACGTTTCT 2504
|||||||||||||||||| | | || || ||| |||| || |||||||||||
Sbjct 2496 TCGGGAAGTGAATTTCGATAAATTCGATATGAAAGCTATGCTTACGGACAAGACGTTTCA 2555
Query 2505 CTCTCAATGGCA-GCATCGATCATCTTCATATCAAGAGTTTCTTTCTCAGTACCATCTaa 2563
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2556 CTCTCAATGGCAAG-ATCGATCATCTTCATATCAAGAGTTTCTTTCTCAGTACCATCTTA 2614
Query 2564 aaaaaTGAGAGATATCTCCCAGTCCCACGGCTTCACCCATCAATTTTGTAATTT 2617
|||||||||||| || || ||||||||||||||| | ||||||||||||||
Sbjct 2615 AAAAATGAGAGAGATATC----TCCCACGGCTTCACC-ACCAATTTTGTAATTT 2663
Score = 122 bits (66), Expect = 1e-26
Identities = 86/95 (91%), Gaps = 4/95 (4%)
Strand=Plus/Plus
Query 2614 ATT-TGGTTTCTTGGTATTCTTGTCTTGTAACCAAAC-TGGTACGTAAATATATATACAT 2671
||| ||||||||||||||| ||||| ||||||||||| ||| | ||||||||||||| ||
Sbjct 2696 ATTATGGTTTCTTGGTATTATTGTCATGTAACCAAACTTGGGATGTAAATATATATATAT 2755
Query 2672 TTA-GAAATTTTCGTTTTGAAAATTCAAATTACGT 2705
||| | |||||||||||||||||||||||||||||
Sbjct 2756 TTATG-AATTTTCGTTTTGAAAATTCAAATTACGT 2789
> AT2G05171.1 | Symbols: | Pseudogene of AT3G18310 | chr2:1874040-1874997
FORWARD LENGTH=958
Length=958
Score = 536 bits (290), Expect = 4e-151
Identities = 740/944 (78%), Gaps = 84/944 (9%)
Strand=Plus/Plus
Query 893 TGAGATGTTTATTGGAATTTG-AGACTCTGA-ATATGGCTGGAACAGAAGTGTTTGTTAG 950
|||||| ||||||| || | | | | ||| | | |||||||||||||| | |||||| |
Sbjct 2 TGAGATCTTTATTGAAAATCGAAAAGTCT-ACACATGGCTGGAACAGATGAATTTGTTGG 60
Query 951 GTTTGCAAAGGCGGGTAGTGACGGTTTTCGGTTTATTCTTGCTTCCCAGAGC-A-ATGTA 1008
|||| |||| || ||||| ||| ||||||||||| || ||||||||| |||| | | |
Sbjct 61 GTTT-CAAATGCTGGTAGCGACAGTTTTCGGTTTTTTATTGCTTCCCGGAGCTATCTTTT 119
Query 1009 TTTCTTTGTGATCCGAGATCAGGAGTACCCT-TGTTGAAATGGCAGCATGATGTTGAGAA 1067
||| ||||||||| |||||||||||| || | ||||||||| ||||||||||||||||||
Sbjct 120 TTTTTTTGTGATCAGAGATCAGGAGTGCCTTCTGTTGAAATAGCAGCATGATGTTGAGAA 179
Query 1068 GCCTTGCTTTATGGATGTTTATAGCTTGTCTGAACTC-GGAGTTAGGACCGTTGAATCAA 1126
|||||| ||| ||||||| |||||||||||||| ||| || ||||||| | ||||||||
Sbjct 180 GCCTTGTTTTTTGGATGTGTATAGCTTGTCTGATCTCAGG-TTTAGGACAGATGAATCAA 238
Query 1127 ATACTTCTTGCGTCATAATTGGGTCGTTTTGGAATGCACAATCTCAAATGTTCTGTTATG 1186
||| || || || ||| |||||| |||| ||||||| |||||| ||||||||| ||||
Sbjct 239 CTACGTCCTGTGTTATAGTTGGGTTGTTTCGGAATGCTCAATCTTAAATGTTCTATTATA 298
Query 1187 GACCTTCTCCTTCTGTTGTGAAGGATCCTTCTTCCT-TGTATGTATGGGAGCTTCCACAC 1245
|||||||||||||||||||||||||| |||| | || | |||||||| |||||| || ||
Sbjct 299 GACCTTCTCCTTCTGTTGTGAAGGATACTTC-TACTATATATGTATGTGAGCTTACATAC 357
Query 1246 AATCTACTCTTACCTGTTGGAAAGTGTCTATGCGGAGATTGTGTATTTAGAGAAGTAATG 1305
|||||||| ||| | |||||||| |||| |||||||| | || | || | || |
Sbjct 358 AATCTACTTTTATCGGTTGGAAACCGTCTCTGCGGAGA-T-TG-A---AGTG-AG----G 406
Query 1306 ATGAAGGAGTCTCTTCCCGAGTGGATCGATTGGCAGAAAA--AGAG--------TGTTCT 1355
|| |||||| ||||||||||||||||||||||| |||||| |||| ||||||
Sbjct 407 ATCAAGGAGCCTCTTCCCGAGTGGATCGATTGGTAGAAAAGGAGAGTCCTTCCTTGTTCT 466
Query 1356 T-G--TTC---TCGGTTTTGG---T---GTTT-TAAACAAGTACCTTCCACTTGGGTCAT 1402
| | ||| | |||||||| | |||| |||| ||||||||||||| |||||||
Sbjct 467 TGGTTTTCGTTTTGGTTTTGGTTTTGGCGTTTAAAAACTAGTACCTTCCACTAGGGTCAT 526
Query 1403 CAGATCAATCTTCCGGGTTTACTTTGATTCGGTTAACATCCTCCGGTAAGCTTGAAGCAG 1462
||||||||||||||||||||||||||||||||||||||||||| || || || ||||||
Sbjct 527 CAGATCAATCTTCCGGGTTTACTTTGATTCGGTTAACATCCTCAGGGAAACTGGAAGCAC 586
Query 1463 TCAAGTTTCGAGCTTCTCGTTTAAAAAGCTTAGAAGTAGTAGCTCACAAAGATTCGGCC- 1521
| | | || | | |||||||||||||| |||| |||||| |||
Sbjct 587 T-A-----C-AGA-----G---A------TTAGAAGTAGTAGCCCACAGAGATTCAGCCC 625
Query 1522 TGCAAATCCGACGAGGTGAACTTACTGTACCTCCCTGATGACGAGGAATACAAATTCCC- 1580
||| |||| ||| || ||||||| ||||||||||||||||||| |||||||||||||
Sbjct 626 TGCGAATCTGACAAGACGAACTTATTGTACCTCCCTGATGACGACGAATACAAATTCCTG 685
Query 1581 AAGTCGATATGAA-TATCTCGAACTCAACTATCTCTCTTCTCACGCAAAAGGGATGCTCG 1639
|| || | | || ||||| |||| | ||||| ||| ||| | |||||| ||| |||
Sbjct 686 AAA-CGGT-TCAAGTATCTT-AACTTTAGTATCTGTCTACTCGCACAAAAGAGATTCTCC 742
Query 1640 CTGGGTTTTTAGATACAAAGATGAGGACAAAATCATCGGATTTGCAGAAGAGTAAATC-T 1698
|| ||||||||||| ||| |||||| | |||| ||| |||| | ||||||| || |
Sbjct 743 CTTGGTTTTTAGATTCAATGATGAGTATAAAACCATAACCTTTGAAAAAGAGTATTTCCT 802
Query 1699 TTCAGCTTAATCTGGCACGAGGAGTTAT--GTAAGAAGTTGAAGATTTGCGGATTTGGTA 1756
|| ||||| ||||| || |||||||||| | || || ||||| | | | |||||||
Sbjct 803 TT-AGCTTGATCTGCCAAGAGGAGTTATACG-AA-AA-TTGAACAA--G-G--TTTGGTA 853
Query 1757 GAGACAGATCTTCCTCTAGCATAACCGCAGTCTTTGAGAATATC 1800
||||| ||||||| |||| ||||||||||||||| || ||||||
Sbjct 854 GAGACGGATCTTCATCTACCATAACCGCAGTCTTCGACAATATC 897
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 134347073354
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5