BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479334
Length=1546
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18330.1 | Symbols: | F-box family protein | chr3:6291127-6... 974 0.0
AT2G07130.1 | Symbols: | pseudogene, hypothetical protein | ch... 686 0.0
AT3G19410.1 | Symbols: | F-box and associated interaction doma... 75.0 2e-12
AT3G25225.1 | Symbols: | pseudogene, hypothetical protein | ch... 63.9 4e-09
AT3G21120.1 | Symbols: | F-box and associated interaction doma... 58.4 2e-07
AT2G04920.1 | Symbols: | F-box and associated interaction doma... 56.5 7e-07
> AT3G18330.1 | Symbols: | F-box family protein | chr3:6291127-6292257
REVERSE LENGTH=1131
Length=1131
Score = 974 bits (527), Expect = 0.0
Identities = 686/762 (90%), Gaps = 13/762 (2%)
Strand=Plus/Plus
Query 402 ATGACGATACCAAATCTTCCAAAGGATTTGGTAGAGGAGGTTCTCAGTTTTGTTCCGGCC 461
||| |||| || |||||||||||||| |||||||||||| ||||||| ||||||||||||
Sbjct 1 ATGCCGATGCCGAATCTTCCAAAGGAGTTGGTAGAGGAGATTCTCAGCTTTGTTCCGGCC 60
Query 462 ACATATCTGAAACGTTTGAGCTCTACTTGCAAACCATGGAACCGTTTGATCCACAACGAC 521
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACATATCTGAAACGTTTGAGCGCTACTTGCAAACCATGGAACCGTTTGATCCACAACGAC 120
Query 522 AAGAGATTCGCAAGAAAGCACTTCGATAACGCCGCAAAGGAGTTTCTGGTTTTCATGTTG 581
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 121 AAGAGATTCGCGAGAAAGCACTACGATAACGCCGCAAAGGAGTTTCTGGTTTTCATGATG 180
Query 582 AGGAAGAACTTCAGGATT-TGTCGGCTAAGCGTCAATCTCCATGGAACTGATCCATCTGC 640
|||||||||||||||||| | |||| | ||||||||||||||||| |||||||||||||
Sbjct 181 AGGAAGAACTTCAGGATTAT-TCGGAGAGGCGTCAATCTCCATGGAGCTGATCCATCTGC 239
Query 641 AGAGGTGAAAGGTGAGCTTACCATACCAGATCCGTATTTTAAGAACTCAGCTGATCAATT 700
||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 240 AGAGGTGAAAGGTGAACTTACCCTACCAGATCCGTATTTTAAGAACTCAGCTGATGAATT 299
Query 701 CAAGATAGATAAAGTCTTTCACTGTGACGGCCTATTGTTATGCACCTCCAAACTCGAACG 760
| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CCATATAGATAGAGTCTTTCACTGTGACGGCCTATTGTTATGCACCTCCAAACTCGAACG 359
Query 761 TAGAATGGTTGTTTGGAACCCGCTTA-CTGGTGAAACCAAGTGGATCCAAATCCGCGAAG 819
|||||||||||||||||||||| ||| |||||||||||||||||||||||| || |||||
Sbjct 360 TAGAATGGTTGTTTGGAACCCG-TTAACTGGTGAAACCAAGTGGATCCAAACCCACGAAG 418
Query 820 AACGCGGCACCTTTGGTCTCGGATACTCCCAAGA---CAAGAACAAATCCTGCAATAAGA 876
|| ||| || ||| |||||||||||||||||| |||||||| ||||||||| ||||
Sbjct 419 AAGGCGACAATTTTTTTCTCGGATACTCCCAAGAAGACAAGAACATATCCTGCAAAAAGA 478
Query 877 GCTACAAAATCATGGGCTTTTATCGTAGTGGTGGCCAAGTTTGGGAATACGATTTGAACT 936
|||||||||||||||| ||||||||||||||| || ||||||||||||||||||| ||||
Sbjct 479 GCTACAAAATCATGGGGTTTTATCGTAGTGGTAGCAAAGTTTGGGAATACGATTTTAACT 538
Query 937 CTGATTCATGGAGGGTTCTTGATGGTATCCGTCCAAAATGGTACTCTGGATTCGAT-T-A 994
|||||||||||||||||||| ||||||||| |||||| ||||||| || || || | |
Sbjct 539 CTGATTCATGGAGGGTTCTTAATGGTATCCTTCCAAATTGGTACTTTG-ATAA-ATCTTA 596
Query 995 TCGGTGCGTGTCTTTGAAGGGAAATGCTTACATGCTTGCTAAAGATGTAACAGATGTGGG 1054
| |||||||||||||||||||||| |||||||||||||| || |||||||||| ||||
Sbjct 597 TAAGTGCGTGTCTTTGAAGGGAAATACTTACATGCTTGCTGGAGCTGTAACAGATATGGG 656
Query 1055 CTTA-AGCCTATCCCTGCTCAAATATGATTTTTCAACAGAGAAATATGTACCTGTGACTC 1113
||| | ||||||| ||| | || ||||||||||||||||||| || ||||||| |||
Sbjct 657 CTTTGA-CCTATCCTTGCAGAGTTACGATTTTTCAACAGAGAAATTTGCACCTGTGTCTC 715
Query 1114 TTCCTTTTCCCTCTCAAGCCCGTAGTTTTAATAACGCTAATC 1155
||||| |||||||||| ||||||||||| ||| |||||||
Sbjct 716 TTCCTGTTCCCTCTCAGGCCCGTAGTTTGAATGGTGCTAATC 757
Score = 409 bits (221), Expect = 5e-113
Identities = 292/324 (90%), Gaps = 13/324 (4%)
Strand=Plus/Plus
Query 1156 ATAAAAGATCCAAGGCTGAGATATGGGTGACAAACAAGATTGATGACACCACCAAAGGAG 1215
|||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 806 ATAAGAGATCCAAGGCTGAGATATGGGTGACAAATAAGATTGATGACACCACCGAAGGAG 865
Query 1216 CAGTTTCTTGGAGCAAGGTCTTAGCATTGGATTTGAGCAGGGAGCTTCA-AATTTCGTTT 1274
|||||||||||| ||||||||||| |||||||||||||||||||||||| || ||||
Sbjct 866 CAGTTTCTTGGACCAAGGTCTTAGAATTGGATTTGAGCAGGGAGCTTCATGCCTT-GTTT 924
Query 1275 AAGACAAATTTCTTGGTAGACGAGGAGAAGAAAGTCTTCATGTGTTGTGTGAGATTG-AG 1333
| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
Sbjct 925 ACTTCAAATTTCTTGGTAGACGAGGAGAAGAAAGTCTTCATTTGTTGTGTGAG-TTGGAA 983
Query 1334 GGAAGACGGAGACGAGAACAAGTCCAAATACAAGGTATACATTGTCGGGGAGGATAATGA 1393
|||||||| |||||||||||||||||| || ||| |||||||||| ||||| || ||| |
Sbjct 984 GGAAGACGAAGACGAGAACAAGTCCAA-TA-AAG-TATACATTGTTGGGGAAGACAAT-A 1039
Query 1394 -AGTCAAAGAAATTGATTCTGGAGTAA-ATGCAACCAGTGGAAGTTG-GCCAACTATTCT 1450
||||||||||||||||||||||| || |||||||||||||| || | ||||||||||||
Sbjct 1040 TAGTCAAAGAAATTGATTCTGGAG-AAGATGCAACCAGTGGATGT-GAGCCAACTATTCT 1097
Query 1451 TAGTTTGTATGTTCCAAGTTTGGT 1474
||||||||||||||| ||||||||
Sbjct 1098 TAGTTTGTATGTTCCCAGTTTGGT 1121
Score = 128 bits (69), Expect = 2e-28
Identities = 115/137 (84%), Gaps = 4/137 (3%)
Strand=Plus/Plus
Query 203 TATGGGC-TTAAGCCTATCCTTGCTCAAATATGATTTTTCAACAGAGAAATATGAACCTG 261
||||||| || | ||||||||||| | || ||||||||||||||||||| || |||||
Sbjct 651 TATGGGCTTTGA-CCTATCCTTGCAGAGTTACGATTTTTCAACAGAGAAATTTGCACCTG 709
Query 262 TGACTCTTCCTTTTCCCTCTCACGCCCATTGTTT-TAGGGAAGCTCATTGTCTTTCCGTT 320
|| |||||||| |||||||||| |||| | |||| | || ||| || |||||||||||
Sbjct 710 TGTCTCTTCCTGTTCCCTCTCAGGCCCGTAGTTTGAATGG-TGCTAATCGTCTTTCCGTT 768
Query 321 GTTAGAGGAGAGAAACT 337
|||||||||||||||||
Sbjct 769 GTTAGAGGAGAGAAACT 785
> AT2G07130.1 | Symbols: | pseudogene, hypothetical protein |
chr2:2955677-2956900 FORWARD LENGTH=1224
Length=1224
Score = 686 bits (371), Expect = 0.0
Identities = 448/484 (93%), Gaps = 10/484 (2%)
Strand=Plus/Plus
Query 344 ATCAAATGATAATATTTTATTGAGAGCCACCTGCTGCCGTTTTCTTCGGAGACCAACGAT 403
|||||||||||| || ||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 64 ATCAAATGATAACATAACATTGAGAGCCACCTGCTGCCGTTTTCTTCGGCGACTAACGAT 123
Query 404 GACGATACCAAATCTTCCAAAGGATTTGGTAGAGGAGGTTCTCAG-TTTTGTTCCGGCCA 462
|||||| || ||||||||||| || |||||||||||| ||||||| |||| |||| ||||
Sbjct 124 GACGATGCCGAATCTTCCAAATGAGTTGGTAGAGGAGATTCTCAGCTTTT-TTCCAGCCA 182
Query 463 CATATCTGAAACGTTTGAGCTCTACTTGCAAACCATGGAACCGTTTGATCCACAACGACA 522
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 183 CATATCTGAAACGTTTGAG--CTACTTGCAAACCATGGAACCGTTTGATCCACAACGACA 240
Query 523 AGAGATTCGCAAGAAAGCACTTCGATAACGCCGCAAAGGAGTTTCTGGTTTTCATGTTGA 582
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGAGATTCGCAAGAAAGCACTACGATAACGCCGCAAAGGAGTTTCTGGTTTTCATGTTGA 300
Query 583 GGAAGAACTTCAGGATTTGTCGGCTAAGCGTCAATCTCCATGGA---A-CTGATCCATCT 638
||||||||||||||||||||| | || ||||||||||||||||| | |||||||||||
Sbjct 301 GGAAGAACTTCAGGATTTGTCTGATAGGCGTCAATCTCCATGGACCTAGCTGATCCATCT 360
Query 639 GCAGAGGTGAAAGGTGAGCTTACCATACCAGATCCGTATTTTAAGAACTCAGCTGATCAA 698
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||
Sbjct 361 GCAGAGGTGAAAGGTGAGCTTACCCTACCAGATCCGTATTTTAAGAACTCTGCTGATGAA 420
Query 699 TTCAAGATAGATAAAGTCTTTCACTGTGACGGCCTATTGTTATGCACCTCCAAACTCGAA 758
||| | ||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 421 TTCGATATAGATAGAGTCTTTCACTGTGACGGCCTATTGTTATGCACTTCCCAACTCGAA 480
Query 759 CGTAGAATGGTTGTTTGGAACCCGCTTA-CTGGTGAAACCAAGTGGATCCAAATCCGCGA 817
|||||||||||||||||||||||| ||| |||||||||||||||||||||||| || |||
Sbjct 481 CGTAGAATGGTTGTTTGGAACCCG-TTAACTGGTGAAACCAAGTGGATCCAAACCCACGA 539
Query 818 AGAA 821
||||
Sbjct 540 AGAA 543
Score = 409 bits (221), Expect = 5e-113
Identities = 292/324 (90%), Gaps = 13/324 (4%)
Strand=Plus/Plus
Query 1156 ATAAAAGATCCAAGGCTGAGATATGGGTGACAAACAAGATTGATGACACCACCAAAGGAG 1215
|||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 879 ATAAGAGATCCAAGGCTGAGATATGGGTGACAAATAAGATTGATGACACCACCGAAGGAG 938
Query 1216 CAGTTTCTTGGAGCAAGGTCTTAGCATTGGATTTGAGCAGGGAGCTTCAA-ATTTCGTTT 1274
|||||||||||| ||||||||||| |||||||||||||||||| |||||| || ||||
Sbjct 939 CAGTTTCTTGGACCAAGGTCTTAGTATTGGATTTGAGCAGGGATCTTCAAGCCTT-GTTT 997
Query 1275 AAGACAAATTTCTTGGTAGACGAGGAGAAGAAAGTCTTCATGTGTTGTGTGAGATTG-AG 1333
| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
Sbjct 998 ACTTCAAATTTCTTGGTAGACGAGGAGAAGAAAGTCTTCATTTGTTGTGTGAG-TTGGAA 1056
Query 1334 GGAAGACGGAGACGAGAACAAGTCCAAATACAAGGTATACATTGTCGGGGAGGATAAT-G 1392
|||||||| |||||||||||||||||| | ||| |||||||||| ||||| || ||| |
Sbjct 1057 GGAAGACGAAGACGAGAACAAGTCCAAG-A-AAG-TATACATTGTTGGGGAAGACAATAG 1113
Query 1393 AAGTCAAAGAAATTGATTCTGGAGTAA-ATGCAACCAGTGGAAGTTG-GCCAACTATTCT 1450
| |||||||||||||||||||||| || |||||||||||||| || | ||||||||||||
Sbjct 1114 A-GTCAAAGAAATTGATTCTGGAG-AAGATGCAACCAGTGGATGT-GAGCCAACTATTCT 1170
Query 1451 TAGTTTGTATGTTCCAAGTTTGGT 1474
||||||||||||||||||||||||
Sbjct 1171 TAGTTTGTATGTTCCAAGTTTGGT 1194
Score = 340 bits (184), Expect = 2e-92
Identities = 262/298 (88%), Gaps = 11/298 (4%)
Strand=Plus/Plus
Query 850 AAGACAAGAACAAATCCTGCAATAAGAGCTACAAAATCATGGGCTTTTATCGTAGTGGTG 909
|||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 542 AAGACAAGAACATATCCTGCAAAAAGAGCTACAAAATCATGGGGTTTTATCGTAGTGGTA 601
Query 910 GCCAAGTTTGGGAATACGA-TTTGAACTCTGATTCATGGAGGGTTCTTGATGGTATCCGT 968
|| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
Sbjct 602 GCAAAGTTTGGGAATACGATTTTGAACTCTGATTCATGGAGGGTTCTTAATGGTATCCTT 661
Query 969 CCAAAATGGTACTCTGGATTCGATTATCG---GTGCGTGTCTTTGAAGGGAAATGCTTAC 1025
||||||||||||| ||||| || | | | |||||||||||||||| ||||| |||||
Sbjct 662 CCAAAATGGTACT-TGGAT--GAATCTTGTAAGTGCGTGTCTTTGAAGCGAAATACTTAC 718
Query 1026 ATGCTTGCTAAAGATGTAACAGATGTGGGCTT--A-AGCCTATCCCTGCTCAAATATGAT 1082
|||||||||| || ||||||||| ||||||| | | ||||||| ||| || || |||
Sbjct 719 ATGCTTGCTAGAGCTGTAACAGAAATGGGCTTTCACA-CCTATCCTTGCACAGTTACGAT 777
Query 1083 TTTTCAACAGAGAAATATGTACCTGTGACTCTTCCTTTTCCCTCTCAAGCCCGTAGTT 1140
|||||||||||||||| || ||||||| ||||||||||||||||||| ||||||||||
Sbjct 778 TTTTCAACAGAGAAATTTGCACCTGTGTCTCTTCCTTTTCCCTCTCACGCCCGTAGTT 835
Score = 294 bits (159), Expect = 1e-78
Identities = 190/205 (93%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 1 CAAAAGAGGAAAGGTGAAAACCAAAACCCTAAAATAATATTAAGAGCCACGTTATCTTAA 60
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 CAAAAGAGGAAAGCTGAAAACCAAAACCCTAAAATAATATTAAGAGCCACGTTATCCTAA 60
Query 61 TAGATCAAATGATAACATTGCATTGAGAGCCACCTGCTGCCGTTTTCTTCGGTGACCAAC 120
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||
Sbjct 61 TAGATCAAATGATAACATAACATTGAGAGCCACCTGCTGCCGTTTTCTTCGGCGACTAAC 120
Query 121 GATGACGATACCAAATCTTCCAAAGGATTTGGTAGAGGAGGTTCTCAG-TTTTGTTCCGG 179
||||||||| || ||||||||||| || |||||||||||| ||||||| |||| |||| |
Sbjct 121 GATGACGATGCCGAATCTTCCAAATGAGTTGGTAGAGGAGATTCTCAGCTTTT-TTCCAG 179
Query 180 CTACATATCTGAAACGTTTGAGCTA 204
| |||||||||||||||||||||||
Sbjct 180 CCACATATCTGAAACGTTTGAGCTA 204
> AT3G19410.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6729585-6730706 FORWARD LENGTH=1122
Length=1122
Score = 75.0 bits (40), Expect = 2e-12
Identities = 101/128 (79%), Gaps = 13/128 (10%)
Strand=Plus/Plus
Query 209 CTTAAGCCTATCCTTGCTCAAATATGATTTTTCAACAGAGAAATATGAACCTGTGACTCT 268
|||||| ||||||||||||||||||||||||||||||||| || || ||||| || ||
Sbjct 636 CTTAAGTGTATCCTTGCTCAAATATGATTTTTCAACAGAGACATCTGTTCCTGT-AC-CT 693
Query 269 TCCTTTTCCCTCTCAC-GCCCATTGTTTTAGGGAAGCTCATT-GTCTTTCCGTTGTTAGA 326
| || |||| | | | | || |||| | ||||| ||| |||||||||| ||||||
Sbjct 694 -C-TT--CCCTATAAAAGTCG-TTCTTTT-G--AAGCT-ATTAGTCTTTCCGTGGTTAGA 744
Query 327 GGAGAGAA 334
| ||||||
Sbjct 745 GAAGAGAA 752
> AT3G25225.1 | Symbols: | pseudogene, hypothetical protein |
chr3:9184970-9186171 FORWARD LENGTH=1202
Length=1202
Score = 63.9 bits (34), Expect = 4e-09
Identities = 36/37 (97%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 924 TACGATTTGAACTCTGATTCATGGAGGGTTCTTGATG 960
|||||||| ||||||||||||||||||||||||||||
Sbjct 594 TACGATTTTAACTCTGATTCATGGAGGGTTCTTGATG 630
> AT3G21120.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7406326-7407429 FORWARD LENGTH=1104
Length=1104
Score = 58.4 bits (31), Expect = 2e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 1458 TATGTTCCAAGTTTGGTTCAAATCCAGCAAG 1488
|||||||||||||||||||||||||||||||
Sbjct 1066 TATGTTCCAAGTTTGGTTCAAATCCAGCAAG 1096
> AT2G04920.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:1726138-1727268 FORWARD LENGTH=1131
Length=1131
Score = 56.5 bits (30), Expect = 7e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 1458 TATGTTCCAAGTTTGGTTCAAATCCAGCAA 1487
||||||||||||||||||||||||||||||
Sbjct 1060 TATGTTCCAAGTTTGGTTCAAATCCAGCAA 1089
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76304828400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5