BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479336
Length=831
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18360.1 | Symbols: | VQ motif-containing protein | chr3:63... 1026 0.0
> AT3G18360.1 | Symbols: | VQ motif-containing protein | chr3:6300827-6301684
REVERSE LENGTH=858
Length=858
Score = 1026 bits (555), Expect = 0.0
Identities = 749/833 (90%), Gaps = 51/833 (6%)
Strand=Plus/Plus
Query 23 ACCATCACCATCCAAAGAGAGAACCAAATGAAAACAACTCCGGAATCTTATACACTCCCT 82
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 53 ACCATCACCATCCAAAGAGAGAACCCAATGAAAACAACTCCGGAATCTTATACACTCCCT 112
Query 83 CACCGTCACCGTCACCGTCACCGCCGACGTTAAAAGTCAACAAAGACTCTCACGTTATTA 142
|||| | |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 113 CACC-T-----TCACCGTCACCGCCAACTTTAAAAGTCAACAAAGACTCTCACGTTATTA 166
Query 143 AAAAACCTCCGTCTCCGTCGTCTTCCTCCTCCGCGGCGAAGCCTCGTCACCCGGTGATCA 202
||||||| ||||||||||| |||| |||||||||||| ||||||||||||||||||||||
Sbjct 167 AAAAACCACCGTCTCCGTCTTCTTTCTCCTCCGCGGCTAAGCCTCGTCACCCGGTGATCA 226
Query 203 TTTACACACACACTCCCAGAATCATACACACTAATCCTAAAGATTTCATGGCTCTTGTTC 262
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 TTTACACACACACTCCAAGAATCATACACACTAATCCTAAAGATTTCATGGCTCTTGTTC 286
Query 263 AAAAACTCACCGGAATGTCCCGCTCCGACGAAGATCCCGGCGGT---AACGCAACGACAG 319
||||||||||||||||| ||| |||||||||||||| ||||||| ||||||| ||| |
Sbjct 287 AAAAACTCACCGGAATGACCCACTCCGACGAAGATCTCGGCGGTGGTAACGCAATGACCG 346
Query 320 ATCCCGGGG-G--AAAATCAATCAACCGGACTGTCTCTGATCTAACCGTCGACAGAAAAA 376
||||||||| | ||||||||||||||| || |||||||| | |||||||||||||||||
Sbjct 347 ATCCCGGGGTGGTAAAATCAATCAACCGAACCGTCTCTGAACCAACCGTCGACAGAAAAA 406
Query 377 ATAATCGGAATCGTTGCGGCGGAGGTGGTGGCAATAATAACTACAACAGAAGCTACTCCG 436
| || || ||||| |||||||| ||| |||||| || | |||| ||||||||
Sbjct 407 ACAACCGCAATCGCTGCGGCGGCGGT------AATAATTAC--CTT-AGAAACTACTCCG 457
Query 437 GTACCGGAGCCGGAACCGGAAACGGAAAGGGGATATTTTTTAATAACACGATGATAAGTG 496
|| | |||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 458 GT---G---CCGGAA----A--CGGAAAGGGGATATTTTTTAATAACACGATGATAAGTG 505
Query 497 AAGATAGTGAATCGTCGTCGGTGATAACAACTGATGAGAACATCGGAGAACATGGACAGG 556
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 506 AAGATAGTGAATCGTCGTCGGTGATAACAACTGAGGAGAACATCGGAGAACATGGACAGG 565
Query 557 TTAATTCTTCTCTTCCGTATTCGGCTGTGGCTATTCCTCCACAGCCACCGCCTCAT--TC 614
|||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||
Sbjct 566 TTAATTCTTCTCTTCCGTATTCAGCGGTGGCTATTCCTCCACAGCCACCGCCTCATCCTC 625
Query 615 -TCC---TCCGCC---ACCGTCAATGTACGACGCGGCGGGGATAAACTACGGTGCTTATT 667
||| |||||| |||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 626 CTCCACCTCCGCCGCCACCGTCTATGTACGACGCTGCGGGGATAAACTACGGTGCTTATT 685
Query 668 TACCGA--TTT----T---CCCGCCGGCGAATCCAACTGATAATTTCTTATGCGGTAATC 718
|||||| ||| | |||||||||||||||| ||||||||||||||||||||||||
Sbjct 686 TACCGACATTTCCGATTTTCCCGCCGGCGAATCCAGCTGATAATTTCTTATGCGGTAATC 745
Query 719 AGCCGTTTGCGAATTTTGATGATCCGCTTTTCTTCGCGCCTAATATGAGAAGCTCTTTCT 778
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 AACCGTTTGCGAATTTTGATGATCCGCTTTTCTTCGCGCCTAATATGAGAAGCTCTTTCT 805
Query 779 CTTCTTCTTCATCTTCTGGCTTCGATGGCTTGACGGAGTTTCGCGATTTTTAA 831
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 CTTCTTCTTCATCTTCTGGCTTCGATGGCTTGACGGAGTTTCGCGATTTTTAA 858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40488722482
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5