BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479338
Length=1445
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18380.2 | Symbols: | sequence-specific DNA binding transcr... 2222 0.0
> AT3G18380.2 | Symbols: | sequence-specific DNA binding transcription
factors;sequence-specific DNA binding | chr3:6310736-6313318
REVERSE LENGTH=1453
Length=1453
Score = 2222 bits (1203), Expect = 0.0
Identities = 1373/1452 (95%), Gaps = 23/1452 (2%)
Strand=Plus/Plus
Query 1 GGTTTCGTTGTCGTTGGGTCACCGGCCGTACT--AGAGATTCACCGTGAATTCGAAAATT 58
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1 GGTTTCGTTGTCGTTGGGTCACCGGCCGTACTAGAGAGATTCACCGTGAATTCGAATATT 60
Query 59 AAGTGAGAGAAGCTCTGATTTGATACCACTTTCTGCCGCCAAtttttgtttttttttGTG 118
||||||||||||||| || ||||| |||||||||||||||||||||| ||||| |
Sbjct 61 AAGTGAGAGAAGCTCCGA-TTGATTTCACTTTCTGCCGCCAATTTTTG----TTTTT-TC 114
Query 119 TTCCCCGGTGAGACGAAGGAGATACCATGGGTCGACCTCCCAGTAATGGCGGTCCGGCGT 178
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 115 TT---CGGTGAGACGAAGAAGATACCATGGGTCGACCTCCCAGTAATGGCGGTCCGGCGT 171
Query 179 TTCGATTTATCCTGCCCGAGGTAACGGAGATGGAAGCAATTTTGCTACAGCATAATACAG 238
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 TTCGATTTATCCTGCCTGAGGTAACGGAGATGGAAGCAATTTTGCTACAGCATAATACAG 231
Query 239 CAATGCCAGGTCGACATATTCTTGAAGCTCTTGCTGATAAGTTTAGTGAATCACCTGAGC 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 CAATGCCAGGTCGACATATTCTTGAAGCTCTTGCTGATAAGTTTAGTGAATCACCTGAGC 291
Query 299 GGAAGGGGAAAATTGTTGTGCAATTCAAGCAAATCTGGAACTGGTTCCAAAATAGGCGAT 358
||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 292 GGAAGGGGAAAGTTGTTGTGCAGTTCAAGCAAATCTGGAACTGGTTTCAAAATAGGCGAT 351
Query 359 ATGCTTTAAGAGCAAGGGGAAATAAAGCTCCTGGGAAGCTAAATGTATCTTCCATGCCGC 418
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 352 ATGCTTTACGAGCAAGGGGAAACAAAGCTCCTGGGAAGCTAAATGTATCTTCCATGCCGC 411
Query 419 GTATGGATTTACCAAATCAGATGAGAAATGTGGTTCAACCGTTAGCCGTTCCTAAAACCA 478
||||||||||||||||||||||||||| |||| ||||||| ||| | |||||||||||||
Sbjct 412 GTATGGATTTACCAAATCAGATGAGAAGTGTGATTCAACCATTATCAGTTCCTAAAACCA 471
Query 479 ATCATATGACTGGAAATTTACCCGGCATGACGCCTGCCCCTTCCGGTATTTTAGTTCCCG 538
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 472 CTCATATGACTGGAAATTTACCCGGCATGACGCCTGCCCCTTCTGGTAGTTTAGTTCCCG 531
Query 539 GTGTCATGAGGAGTGGTTCAGACAACTCTTACTTGGAATTTGAAGCCAAATCTGCCAGGG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 GTGTCATGAGGAGTGGTTCAGACAACTCTTACTTGGAATTTGAAGCCAAATCTGCCAGGG 591
Query 599 ATGGTGCTTGGTATGATGTGCAAGCTTTCCTAGCTCATAGAAACTTGGAGATTGGTGATC 658
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 ATGGTGCATGGTATGATGTGCAAGCTTTCCTAGCTCATAGAAACTTGGAGATTGGTGATC 651
Query 659 CGGAAGTGCAGGTTCGATTTGCGGGTTTTGAAGTTGAAGAAGATGAATGGATAAATGTCA 718
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 652 CGGAAGTGCAGGTTCGATTTGCGGGTTTCGAAGTTGAAGAAGATGAATGGATAAATGTCA 711
Query 719 AAAAGCACGTAAGACAAAGGTCTCTCCCATGTGAAGCATCAGAATGTGTTGCAGTTCTTG 778
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 AAAAGCATGTAAGACAACGGTCTCTCCCATGTGAAGCATCAGAATGTGTTGCAGTTCTTG 771
Query 779 CTGGAGATCTCGTACTTTGTTTCCAGGAAGGAAAAGATCAAGCTCTTTACTTTGATGCCA 838
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 772 CTGGAGATCTCGTCCTTTGTTTCCAGGAAGGAAAAGATCAAGCTCTTTACTTTGACGCCA 831
Query 839 TTGTTCTTGACGCACAAAGAAGAAGACATGATGTCAGAGGTTGTCGTTGTAGATTCTTGG 898
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 832 TTGTTCTTGACGCACAGAGAAGAAGACATGATGTCAGAGGTTGTCGTTGTAGGTTCTTGG 891
Query 899 TGCGTTACAGCCACGACCAGTCCGAGCAGGAAATTGTTCCTTTGAGGAAGATTTGTCGGC 958
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 892 TGCGTTACAGCCACGACCAGTCCGAGCAGGAAATCGTTCCCTTGAGGAAGATTTGTCGGC 951
Query 959 GGCCCGAGACAGATTACAGGCTACAACAACTTCACAACGCTGTAAACGATTTGGGTAACT 1018
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 952 GGCCCGAGACAGATTACAGGCTACAACAACTTCACAACGCCGTAAACGATTTGGCTAACT 1011
Query 1019 CGAATCAGCATCAGATACCCGCTCTAGATGCGGCTGCGAAAACCCCTGTTTCACAATCCG 1078
| ||||||||||||||||||||||||||||||||||| ||||||||| | |||| | |||
Sbjct 1012 CAAATCAGCATCAGATACCCGCTCTAGATGCGGCTGCAAAAACCCCTCTGTCACTACCCG 1071
Query 1079 GAGCTACAGTTCCCATTGTTGCACCCGAGCCAAAAGATCCGAGCCTGAGTGCCACTCCAG 1138
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1072 GAGCTACAGTTCCCATTGTTGCACCCGAGTCAAAAGATCCGAGCCTGAGTGCCACTCCAG 1131
Query 1139 TCACTTTGGTTCAGCCTAGCTCCAGTGCAGCCACTGTCCCCGCTGGTTCTGCCTAGGCCA 1198
||||||||||||||||||||||| |||||| ||||| ||||||||||| ||||||||||
Sbjct 1132 CCACTTTGGTTCAGCCTAGCTCCAATGCAGCTACTGTTCCCGCTGGTTCAGCCTAGGCCA 1191
Query 1199 TGTAATTTCTATCCCCTTTTGTAACCA-CCATTTT-CACAGTTACTAATAGAGCTTTAGA 1256
|||||||||||||||| |||||||| | ||||||| ||||||||||| ||||| || | |
Sbjct 1192 TGTAATTTCTATCCCCGTTTGTAAC-AGCCATTTTTCACAGTTACTAGTAGAGGTT-A-A 1248
Query 1257 GGTTAACGGATCATATGCATTTGTAATCTCACACTGTGACTTAGTTATCTAAAGCTGTAT 1316
|| |||||||||||||| ||| |||||||| ||| ||||| ||||||||||||||
Sbjct 1249 C-TTG--GGATCATATGCATT-GTACTCTCACACAATGAATTAGTCATCTAAAGCTGTAT 1304
Query 1317 CATGCCATGTTACTTGATCCTTCATGTATGATGGAATAATTATGGTTTAGTCCGGTTTAT 1376
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1305 CATGCCATGTTACTTGATCCTTCATGTATGATGGAATATTTATGGTTTAGTCCGGTTTAT 1364
Query 1377 TCATCATCTGTTGATGGTCACCGGTTT---ACTCTTTTGAACAAACATGCTCGAATCATG 1433
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1365 TCATCATCTGTTGATGGTCACCGGTTTTTTACTCTTTTGAACAAACATGCTCGAATCATG 1424
Query 1434 TTGATTTATTCT 1445
| ||||||||||
Sbjct 1425 TGGATTTATTCT 1436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71234573355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5