BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479338 Length=1445 Score E Sequences producing significant alignments: (Bits) Value AT3G18380.2 | Symbols: | sequence-specific DNA binding transcr... 2222 0.0 > AT3G18380.2 | Symbols: | sequence-specific DNA binding transcription factors;sequence-specific DNA binding | chr3:6310736-6313318 REVERSE LENGTH=1453 Length=1453 Score = 2222 bits (1203), Expect = 0.0 Identities = 1373/1452 (95%), Gaps = 23/1452 (2%) Strand=Plus/Plus Query 1 GGTTTCGTTGTCGTTGGGTCACCGGCCGTACT--AGAGATTCACCGTGAATTCGAAAATT 58 |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 1 GGTTTCGTTGTCGTTGGGTCACCGGCCGTACTAGAGAGATTCACCGTGAATTCGAATATT 60 Query 59 AAGTGAGAGAAGCTCTGATTTGATACCACTTTCTGCCGCCAAtttttgtttttttttGTG 118 ||||||||||||||| || ||||| |||||||||||||||||||||| ||||| | Sbjct 61 AAGTGAGAGAAGCTCCGA-TTGATTTCACTTTCTGCCGCCAATTTTTG----TTTTT-TC 114 Query 119 TTCCCCGGTGAGACGAAGGAGATACCATGGGTCGACCTCCCAGTAATGGCGGTCCGGCGT 178 || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 115 TT---CGGTGAGACGAAGAAGATACCATGGGTCGACCTCCCAGTAATGGCGGTCCGGCGT 171 Query 179 TTCGATTTATCCTGCCCGAGGTAACGGAGATGGAAGCAATTTTGCTACAGCATAATACAG 238 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 172 TTCGATTTATCCTGCCTGAGGTAACGGAGATGGAAGCAATTTTGCTACAGCATAATACAG 231 Query 239 CAATGCCAGGTCGACATATTCTTGAAGCTCTTGCTGATAAGTTTAGTGAATCACCTGAGC 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 232 CAATGCCAGGTCGACATATTCTTGAAGCTCTTGCTGATAAGTTTAGTGAATCACCTGAGC 291 Query 299 GGAAGGGGAAAATTGTTGTGCAATTCAAGCAAATCTGGAACTGGTTCCAAAATAGGCGAT 358 ||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 292 GGAAGGGGAAAGTTGTTGTGCAGTTCAAGCAAATCTGGAACTGGTTTCAAAATAGGCGAT 351 Query 359 ATGCTTTAAGAGCAAGGGGAAATAAAGCTCCTGGGAAGCTAAATGTATCTTCCATGCCGC 418 |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 352 ATGCTTTACGAGCAAGGGGAAACAAAGCTCCTGGGAAGCTAAATGTATCTTCCATGCCGC 411 Query 419 GTATGGATTTACCAAATCAGATGAGAAATGTGGTTCAACCGTTAGCCGTTCCTAAAACCA 478 ||||||||||||||||||||||||||| |||| ||||||| ||| | ||||||||||||| Sbjct 412 GTATGGATTTACCAAATCAGATGAGAAGTGTGATTCAACCATTATCAGTTCCTAAAACCA 471 Query 479 ATCATATGACTGGAAATTTACCCGGCATGACGCCTGCCCCTTCCGGTATTTTAGTTCCCG 538 |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 472 CTCATATGACTGGAAATTTACCCGGCATGACGCCTGCCCCTTCTGGTAGTTTAGTTCCCG 531 Query 539 GTGTCATGAGGAGTGGTTCAGACAACTCTTACTTGGAATTTGAAGCCAAATCTGCCAGGG 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 532 GTGTCATGAGGAGTGGTTCAGACAACTCTTACTTGGAATTTGAAGCCAAATCTGCCAGGG 591 Query 599 ATGGTGCTTGGTATGATGTGCAAGCTTTCCTAGCTCATAGAAACTTGGAGATTGGTGATC 658 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 592 ATGGTGCATGGTATGATGTGCAAGCTTTCCTAGCTCATAGAAACTTGGAGATTGGTGATC 651 Query 659 CGGAAGTGCAGGTTCGATTTGCGGGTTTTGAAGTTGAAGAAGATGAATGGATAAATGTCA 718 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 652 CGGAAGTGCAGGTTCGATTTGCGGGTTTCGAAGTTGAAGAAGATGAATGGATAAATGTCA 711 Query 719 AAAAGCACGTAAGACAAAGGTCTCTCCCATGTGAAGCATCAGAATGTGTTGCAGTTCTTG 778 ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 712 AAAAGCATGTAAGACAACGGTCTCTCCCATGTGAAGCATCAGAATGTGTTGCAGTTCTTG 771 Query 779 CTGGAGATCTCGTACTTTGTTTCCAGGAAGGAAAAGATCAAGCTCTTTACTTTGATGCCA 838 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 772 CTGGAGATCTCGTCCTTTGTTTCCAGGAAGGAAAAGATCAAGCTCTTTACTTTGACGCCA 831 Query 839 TTGTTCTTGACGCACAAAGAAGAAGACATGATGTCAGAGGTTGTCGTTGTAGATTCTTGG 898 |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 832 TTGTTCTTGACGCACAGAGAAGAAGACATGATGTCAGAGGTTGTCGTTGTAGGTTCTTGG 891 Query 899 TGCGTTACAGCCACGACCAGTCCGAGCAGGAAATTGTTCCTTTGAGGAAGATTTGTCGGC 958 |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 892 TGCGTTACAGCCACGACCAGTCCGAGCAGGAAATCGTTCCCTTGAGGAAGATTTGTCGGC 951 Query 959 GGCCCGAGACAGATTACAGGCTACAACAACTTCACAACGCTGTAAACGATTTGGGTAACT 1018 |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct 952 GGCCCGAGACAGATTACAGGCTACAACAACTTCACAACGCCGTAAACGATTTGGCTAACT 1011 Query 1019 CGAATCAGCATCAGATACCCGCTCTAGATGCGGCTGCGAAAACCCCTGTTTCACAATCCG 1078 | ||||||||||||||||||||||||||||||||||| ||||||||| | |||| | ||| Sbjct 1012 CAAATCAGCATCAGATACCCGCTCTAGATGCGGCTGCAAAAACCCCTCTGTCACTACCCG 1071 Query 1079 GAGCTACAGTTCCCATTGTTGCACCCGAGCCAAAAGATCCGAGCCTGAGTGCCACTCCAG 1138 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1072 GAGCTACAGTTCCCATTGTTGCACCCGAGTCAAAAGATCCGAGCCTGAGTGCCACTCCAG 1131 Query 1139 TCACTTTGGTTCAGCCTAGCTCCAGTGCAGCCACTGTCCCCGCTGGTTCTGCCTAGGCCA 1198 ||||||||||||||||||||||| |||||| ||||| ||||||||||| |||||||||| Sbjct 1132 CCACTTTGGTTCAGCCTAGCTCCAATGCAGCTACTGTTCCCGCTGGTTCAGCCTAGGCCA 1191 Query 1199 TGTAATTTCTATCCCCTTTTGTAACCA-CCATTTT-CACAGTTACTAATAGAGCTTTAGA 1256 |||||||||||||||| |||||||| | ||||||| ||||||||||| ||||| || | | Sbjct 1192 TGTAATTTCTATCCCCGTTTGTAAC-AGCCATTTTTCACAGTTACTAGTAGAGGTT-A-A 1248 Query 1257 GGTTAACGGATCATATGCATTTGTAATCTCACACTGTGACTTAGTTATCTAAAGCTGTAT 1316 || |||||||||||||| ||| |||||||| ||| ||||| |||||||||||||| Sbjct 1249 C-TTG--GGATCATATGCATT-GTACTCTCACACAATGAATTAGTCATCTAAAGCTGTAT 1304 Query 1317 CATGCCATGTTACTTGATCCTTCATGTATGATGGAATAATTATGGTTTAGTCCGGTTTAT 1376 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1305 CATGCCATGTTACTTGATCCTTCATGTATGATGGAATATTTATGGTTTAGTCCGGTTTAT 1364 Query 1377 TCATCATCTGTTGATGGTCACCGGTTT---ACTCTTTTGAACAAACATGCTCGAATCATG 1433 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1365 TCATCATCTGTTGATGGTCACCGGTTTTTTACTCTTTTGAACAAACATGCTCGAATCATG 1424 Query 1434 TTGATTTATTCT 1445 | |||||||||| Sbjct 1425 TGGATTTATTCT 1436 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71234573355 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5