BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479342
Length=587
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18410.1 | Symbols: | Complex I subunit NDUFS6 | chr3:63231... 900 0.0
AT1G49140.1 | Symbols: | Complex I subunit NDUFS6 | chr1:18176... 390 7e-108
AT1G26558.1 | Symbols: | other RNA | chr1:9175611-9177556 FORW... 87.9 1e-16
> AT3G18410.1 | Symbols: | Complex I subunit NDUFS6 | chr3:6323162-6324579
FORWARD LENGTH=591
Length=591
Score = 900 bits (487), Expect = 0.0
Identities = 557/589 (95%), Gaps = 12/589 (2%)
Strand=Plus/Plus
Query 1 agaaaatcacgaagacgacgagtgaagaagaagagaggagaaaaagcaatgggaagaaag 60
||| |||||||||||||||||||||||||| | ||| || |||||||||| ||||||
Sbjct 1 AGATAATCACGAAGACGACGAGTGAAGAAG-A-AGA--AG---AAGCAATGGGGAGAAAG 53
Query 61 aagGGATTACCGGAGTTCGAAGAGTCGGCGCCGGATGGATTTGATCCGGCCAATCCATAT 120
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 54 AAGGGATTACCGGAGTTCGAAGAGTCGGCGCCGGATGGCTTTGATCCGGAAAATCCATAC 113
Query 121 AAGGATCCGGTGGCGATGGTTGAAATGAGAGAGCACATCGTTCGAGAGAAATGGATCCAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 AAGGATCCGGTGGCGATGGTTGAAATGAGAGAGCACATCGTTCGAGAGAAATGGATCCAA 173
Query 181 ATCGAGAAGGCTAAGATCTTGCGTGAGAAGGTCAAATGGTGTTACCGCGTCGAAGGAGTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 ATCGAGAAGGCTAAGATCTTGCGTGAGAAGGTCAAATGGTGTTACCGCGTCGAAGGAGTC 233
Query 241 AATCACTACCAGAAATGTCGTCATCTTGTTCAGCAGTATCTTGATTCCACTCGCGGCGTC 300
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 234 AATCACTATCAGAAATGTCGTCATCTTGTTCAGCAGTATCTCGATTCCACTCGCGGCGTC 293
Query 301 GGTTGGGGAAAGGATCATCGTCCTATTTCGCTCCACGGTCCCAAACCGGAGGCTGTTGAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 GGTTGGGGAAAGGATCATCGTCCTATTTCGCTCCACGGTCCCAAACCGGAGGCTGTTGAA 353
Query 361 GCTGAATAATGTTGTGTGCCTCATTGAGATGTCTGAGCTTTTGATATGGGACATAAAATG 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 354 GCTGAATAATGTTGTGTGCCTCATTGAGATGTCTGAGGTTTTGATATGGGACATAGAATG 413
Query 421 GA-TCTTTTCACAAGCTAATGGCTCCCTGATTTCTTCCGAACGCTGTGCAAATTTCTCTT 479
|| || ||||||||||||||||||||||||| |||||| ||| |||| | |||||||||
Sbjct 414 GAATCATTTCACAAGCTAATGGCTCCCTGATATCTTCCAAACTCTGT--AGATTTCTCTT 471
Query 480 ATTCTTAGAAACTTGTGGGTCTTTGGACCAACGGATTCATGTAATTGAGCTTTGAGTATT 539
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 GTTCTTAGAAACTTGTCGGTCTTTGGACCAACGGATTCATGTAATTGAGCTTTGAGTATT 531
Query 540 GTTATACTCCACAGTATCCGTTTCTGATTG-TCAAATAAGTCCCTTTTT 587
|||| ||||||||||||| ||||||||| | ||||||||||||| ||||
Sbjct 532 GTTACACTCCACAGTATCAGTTTCTGAT-GATCAAATAAGTCCCATTTT 579
> AT1G49140.1 | Symbols: | Complex I subunit NDUFS6 | chr1:18176772-18178298
REVERSE LENGTH=619
Length=619
Score = 390 bits (211), Expect = 7e-108
Identities = 301/344 (88%), Gaps = 7/344 (2%)
Strand=Plus/Plus
Query 49 atgggaagaaagaagGGATTACCGGAGTTCGAAGAGTCGGCGCCGGATGGATTTGATCCG 108
||||| || ||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 30 ATGGGGAGGAAGAAGGGATTGCCGGAGTTCGAAGAGTCGGCGCCGGATGGATTCGATCCT 89
Query 109 GCCAATCCATATAAGGATCCGGTGGCGATGGTTGAAATGAGAGAGCACATCGTTCGAGAG 168
| ||||| || ||||||||||| |||||||| || |||||||| ||||| ||||| |||
Sbjct 90 GAGAATCCGTACAAGGATCCGGTTGCGATGGTGGAGATGAGAGAACACATTGTTCGTGAG 149
Query 169 AAATGGATCCAAATCGAGAAGGCTAAGATCTTGCGTGAGAAGGTCAAATGGTGTTACCGC 228
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 150 AAATGGATCCATATCGAGAAGGCTAAGATCTTACGTGAGAAGGTCAAATGGTGTTACCGC 209
Query 229 GTCGAAGGAGTCAATCACTACCAGAAATGTCGTCATCTTGTTCAGCAGTATCTTGATTCC 288
|||||||| || || || |||||||| |||||||||||||||||||||||||| ||| ||
Sbjct 210 GTCGAAGGCGTTAACCATTACCAGAAGTGTCGTCATCTTGTTCAGCAGTATCTCGATGCC 269
Query 289 ACTCGCGGCGTCGGTTGGGG-AAAGGATCATCGTCCTATTTCGCTCCACGGTCCCAAACC 347
||||||||||| |||||||| |||| | || |||||||| || || |||||||| || ||
Sbjct 270 ACTCGCGGCGTTGGTTGGGGCAAAG-ACCACCGTCCTATCTCTCTTCACGGTCCTAAGCC 328
Query 348 GG-AGGCTGTTGAAG---CTGAATAATGTTGTGTGCCTCATTGA 387
| || ||||||||| |||||| ||||||||||| | |||||
Sbjct 329 AGTAG-CTGTTGAAGAAGCTGAATGATGTTGTGTGCGTGATTGA 371
> AT1G26558.1 | Symbols: | other RNA | chr1:9175611-9177556 FORWARD
LENGTH=483
Length=483
Score = 87.9 bits (47), Expect = 1e-16
Identities = 49/50 (98%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 338 GTCCCAAACCGGAGGCTGTTGAAGCTGAATAATGTTGTGTGCCTCATTGA 387
||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 301 GTCCCAAACCGGAGGTTGTTGAAGCTGAATAATGTTGTGTGCCTCATTGA 350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28231590614
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5