BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479344
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18420.1 | Symbols: | Protein prenylyltransferase superfami... 1511 0.0
> AT3G18420.1 | Symbols: | Protein prenylyltransferase superfamily
protein | chr3:6324633-6325793 REVERSE LENGTH=1161
Length=1161
Score = 1511 bits (818), Expect = 0.0
Identities = 938/995 (94%), Gaps = 12/995 (1%)
Strand=Plus/Plus
Query 33 ttcttcttcattgatttcttctttcGTCGCCGTCAAAGCGACTCCGGTCACCGGACCTCT 92
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 93 TTCTTCTTCATTGGTTTCTTCTTTCGTCGCCGTTAAAGCGACTCCGGTCACCGGACCTCT 152
Query 93 GATTCCCCGTCGCGATCTTCTTTCTATTCGTATCA-AGGCTAGCTCGAATCAGAATGGTT 151
||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 153 GATTCCCCGTCGCGATCTTCTTTCTATTCGTATCAGAG-CTAGCTCGAATCAGAATAGTT 211
Query 152 CCGGTTATTGTTTTCCAGAAAAGTTTAAATCTTTTGCCAAATCAGCGATTCTCATTGGCG 211
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 212 CTGGTTATTGTTTTCCAGAAAAGTTTAAATCTTTTGCCAAATCAGCGATTCTCATCGGTG 271
Query 212 CTGCTGTTTCAATGACCGGAAAGTTCTCAACTTTACCGGTGAAAGCGGAATCTCCGGTTA 271
||||||||||||||||||||||||| |||||||||||||| ||||| || ||||||||||
Sbjct 272 CTGCTGTTTCAATGACCGGAAAGTTTTCAACTTTACCGGTTAAAGCCGAGTCTCCGGTTA 331
Query 272 CGACTACCGAAGAA-ACCTACGAGGAAGTGAAAGAAGAGAAACTCTCTGAGATCGCGCCA 330
|||||| |||| || ||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 332 CGACTATCGAA-AAGACCTACGAGGAAGTGAAAGAAGAGAAACTGTCTGAGATCACGCCA 390
Query 331 TTATCTGAGCTTTTGGATTCCACTCCTGAGGCCGTCGAGACACTGAGATCACTCCTGCAA 390
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 391 TTATCTGAGCTTTTGGATTCCACTCCTGAGGCCGTCGAGACGCTGAGATCACTCCTGCAG 450
Query 391 CAGAAGCTAGAGAAGGGAGAAGATGAAGAAGCTCTTAAGCTCTTAGAGAGACTAGTAACT 450
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 451 CAGAAGCTAGAGAAGGGAGAAGATGAAGAAGCTCTTAAGCTATTAGAGAGACTAGTAGCT 510
Query 451 GCACAACCTGATGAAACAGAGTGGAAGTTCTTAATGGCGAGGTTGTTGGGCGAAATGGGT 510
|||||||| || |||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 511 GCACAACCAGAAGAAACAGAGTGGAAGTTCTTAATGGCGAGGCTGTTAGGCGAAATGGGT 570
Query 511 CGTCCGGAAAACGCACGCCAGATGTTCGAGGAAATTCTCCAACGAAACCCGCTTTCGTTT 570
||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 571 CGTCCCGAAAACGCACGCCAGATGTTCGAGGAAATTCTCCAAAGAAACCCACTTTCGTTT 630
Query 571 GAGGCTTTATTCGAGAACGCATTGCTCATGGACAGGTCCGGGGAAGGAGCTGCAGTGCTG 630
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 631 GAGGCTTTATTCGAGAATGCATTGCTCATGGACAGGTCCGGGGAAGGAAATGCAGTGCTG 690
Query 631 CAGAGGCTGGAAGATGCTTTAGCTGTAGCCGAGGCTGAGTATTTGGTGAAGGAAGCGAGA 690
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 691 CAGAGGCTAGAAGATGCTTTAGCTGTAGCTGAGGCTGAGTATTTGGTGAAGGAAGCGAGA 750
Query 691 GACGTGAGACTGATCATTGCGCAGATACATTTCTTGCAGAAGAACGTTGATGAAGCATTG 750
|| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 751 GATGTGAGACTGATCATTGCGCAGATACATTTCTTGCAGAAGAATGTGGATGAAGCATTG 810
Query 751 AAGAGCTACGAGCAGCTGACGAAAGAGGATCCAAAGGATTTCAGACCGTATTTCTGTCGA 810
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 811 AAGAGCTACGAGCAGCTGACGAAAGAGGATCCTAAGGATTTCAGACCGTATTTCTGTCGA 870
Query 811 GGTATGATTTATAGCTTGCTTGACAAGAACGTTGAAGCTAAGGAACAGTTTGCGAAGTAC 870
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 871 GGTATGATCTATAGCTTGCTTGACAAGAACGTTGAAGCTAAGGAACAGTTTGCTAAGTAC 930
Query 871 AGAGAGCTTTCTCCGAAGAAATTTGAAGTGGAAGGGTACTTGAGGACTCCATTGTCTAAA 930
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 931 AGAGAGCTCTCTCCAAAGAAATTTGAAGTAGAAGGGTACTTGAGGACTCCATTGTCTAAA 990
Query 931 ATGAAGCTTTTTGGTGGTAGTGAAGAGAACTAAGTTTAATTGATTATTGATAGCTCTGAA 990
||||||||||||||||||||||| |||||||||||| | | | | ||||||| | ||
Sbjct 991 ATGAAGCTTTTTGGTGGTAGTGAGGAGAACTAAGTT-A---G-T-AC-GATAGCTTTAAA 1043
Query 991 TCATATCAGAAGAATAAGACACCTGAAAAATTATG 1025
|||||||||||||||||||||| || || || |||
Sbjct 1044 TCATATCAGAAGAATAAGACAC-TGGAAGATAATG 1077
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52007764620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5