BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479345
Length=775
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18430.1 | Symbols: | Calcium-binding EF-hand family protei... 1179 0.0
> AT3G18430.1 | Symbols: | Calcium-binding EF-hand family protein
| chr3:6325915-6327632 FORWARD LENGTH=813
Length=813
Score = 1179 bits (638), Expect = 0.0
Identities = 735/781 (94%), Gaps = 9/781 (1%)
Strand=Plus/Plus
Query 1 AGGCAGATCTCCGGCGAAACTTTAGACCGAGATACGGAAGAATCAGATCAACGCATGCGA 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2 AGGCAGATCTCCGGCGAAACTTTAGACTGAGATACGGAAGAATCAGATCAACGCATGCGA 61
Query 61 CCAAGAAAATCAAATTCGGG-CGGAGAAGAAAGAGATAAGCTTTTACATCAGTTTTTGAA 119
||||| |||||||| ||||| | |||||||||||||||||||| |||||| ||||||||
Sbjct 62 CCAAGTAAATCAAAATCGGGTTGAAGAAGAAAGAGATAAGCTTTCACATCAATTTTTGAA 121
Query 120 GGCGTAAAATGGGAAACACTTCGTCGATGCTGACTCAATACGACATCGAAGAAGTTCAGA 179
|||| ||||||| || ||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 122 GGCGCGAAATGGGGAATACTTCATCGATGCTGACTCAGTACGACATCGAAGAAGTTCAGA 181
Query 180 GCCATTGTCATGATCTATTTGAGCAGCAGGAGATTCTATCTCTGTATCAAAGGTTTTGCC 239
| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 182 GTCATTGTCATGATCTATTTGAGCAGCAGGAGATTTTATCTCTGTATCAACGGTTTTGCC 241
Query 240 AGTTAGATCGAAACGCAAAGGGATTTATATCTTCTGATGAGTTTCTCTCTGTGCCTGAGT 299
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 242 AGTTAGATCGAAACGCAAAAGGATTTATATCTGCTGATGAGTTTCTCTCTGTGCCTGAGT 301
Query 300 TTGCCATGAATCCACTATCACAGAGGCTGCTTAAGATGGTTGATGGTTTGAACTTTAAGG 359
|||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TTGCGATGAATCCACTCTCTCAGAGGCTGCTTAAGATGGTTGATGGTTTGAACTTTAAGG 361
Query 360 ATTTTGTGGCTTTCTTGTCTGCATTTAGTGCCAAGGCTAGTCTAAGACAGAAAGTTCAGT 419
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 362 ATTTTGTTGCTTTCTTGTCTGCGTTTAGTGCCAAGGCTAGTCTAAGACAGAAAGTTCAAT 421
Query 420 TGATCTTTAAAGTCTATGATTCGGACTGCAACGGGAAGGTCTCCTTTAAAGATATCATGG 479
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 422 TGATCTTTAAAGTCTATGATTCGGACTGCAACGGGAAGGTCTCTTTTAAAGATATCATGG 481
Query 480 AAGTGTTGCGTGACTTATCCGGATCATTCATGTCTGATGAGCAAAGAGAGCAAGTACTGA 539
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 482 AAGTGTTGCGTGACTTATCGGGATCATTCATGTCTGATGAGCAAAGAGAGCAAGTACTGA 541
Query 540 GCCAGGTGTTGAAGGAATCGGGCTACACAAGCGACTCTTTCTTAACACTAGAGGATTTCA 599
||||||| |||||||||||||||||||| || ||||| |||||||| || ||||||||||
Sbjct 542 GCCAGGTTTTGAAGGAATCGGGCTACACGAGTGACTCATTCTTAACTCTGGAGGATTTCA 601
Query 600 TAAAGATCTTTGGGAGTAGTAGACCGGAGATGGACGTTGAAATCCCTGTGGATTAGGGTT 659
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 602 TAAAGATCTTTGGGAGTAGTAGACCGGAGATGGACGTTGAAATTCCTGTGGATTAGACTT 661
Query 660 -ATG-TGCATAT--CATCAAACACAACACTCAAATCTCATCTTGTATTTTGTCCACACTG 715
||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 TATGAT-CATATATCATCAAACACAACACTCAAATCTCATCTTGTATTTTGTCCACACTG 720
Query 716 TTACTAGAATAATCCTTGTTAATTGATCACACAACATTGCAGGCTTTTTCAGCACTT-TT 774
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 721 TTTCTAGAATAATCCTTGTTAATTGATCACAT--CATTGCAGGCTTTTTCAGCACTTGTT 778
Query 775 A 775
|
Sbjct 779 A 779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37675610250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5