BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479347
Length=854
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18450.1 | Symbols: | PLAC8 family protein | chr3:6331034-6... 1075 0.0
AT3G18460.1 | Symbols: | PLAC8 family protein | chr3:6333048-6... 499 2e-140
> AT3G18450.1 | Symbols: | PLAC8 family protein | chr3:6331034-6332218
REVERSE LENGTH=850
Length=850
Score = 1075 bits (582), Expect = 0.0
Identities = 774/862 (90%), Gaps = 32/862 (4%)
Strand=Plus/Plus
Query 1 CTATAATGCTTTCACAAAATTAAACGATAAGAGAGTTGTTATTATAAGaaaaaaaGAGAG 60
|||||||||||||| ||||||| ||||||||||| ||||||||| ||| |||||| ||||
Sbjct 1 CTATAATGCTTTCAAAAAATTAGACGATAAGAGATTTGTTATTAAAAG-AAAAAA-AGAG 58
Query 61 AAGAAAATCTGTTTT-GTTGGCAAACTCTAGCCGGTTAAAGACTATGGGTCGACCAGATG 119
||| ||| || |||| |||| | ||||||||| || || | |||||||||||||||| ||
Sbjct 59 AAG-AAACCT-TTTTCGTTGCCGAACTCTAGCGGGGTAGATACTATGGGTCGACCAGTTG 116
Query 120 GCCAAAAGAATCAGG--C-ACCTCCGGTTCAACATACGGCTAGTCCGAACAACAAGGTAC 176
|||||| |||||||| | |||| ||||||||||||||||||| |||| |||||||||
Sbjct 117 GCCAAACGAATCAGGCACAACCTTCGGTTCAACATACGGCTAGCCCGAGCAACAAGGT-- 174
Query 177 ATTCCCATAACGGTGCACCTGGTAAGCCGACAAACATACCAACGGGCATACGGGTCAATT 236
| ||||||||||||| | |||||||||| ||||||||||||||||||||| ||||||||
Sbjct 175 A-TCCCATAACGGTGGAATTGGTAAGCCGGCAAACATACCAACGGGCATACCGGTCAATT 233
Query 237 ACCAACAAACACAAAATC-GCTGGAGTTCTGAACTTTTCGATTGCATGAACGATAGTGAA 295
|||||||||||||||||| | ||||||||| |||||||||||||||||||||| ||||||
Sbjct 234 ACCAACAAACACAAAATCAG-TGGAGTTCTCAACTTTTCGATTGCATGAACGACAGTGAA 292
Query 296 AATGCCGTGATCACATTGATCGCTCCATGCGTCACGTTCGGACAGATTGCGGAGGTTGTT 355
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct 293 AATGCCGTGATCACATTGATAGCTCCATGCGTCACGTTCGGACAGATTGCGGAGATCGTT 352
Query 356 GACGAAGGCGCGACGCCTTGTGCGACAGCTGGGTTGTTGTACGGAGCGA-TAtttttttC 414
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
Sbjct 353 GACGAAGGCGCGACGCCTTGTGCGACAGCTGGGTTGTTGTACGGAGC-ACTATTTTTTAC 411
Query 415 CGGGGCATGTTTCGTGTATTCATACATGTTCAGGGCCAAGATACGAAACAAATAT-GGGT 473
||||||| |||| ||||||||||||||||||||||||| ||||||||| || | | ||||
Sbjct 412 CGGGGCAAGTTTTGTGTATTCATACATGTTCAGGGCCAGGATACGAAAGAAGT-TCGGGT 470
Query 474 TACCAGATGCTCCGGCTCCGGATTGGATCACTCACTTAGTCTGTATGCAGTGTGCTCTTT 533
|||| |||||||||||||| |||||||||||||||||||||||||||| || ||||||||
Sbjct 471 TACCGGATGCTCCGGCTCCCGATTGGATCACTCACTTAGTCTGTATGCCGTTTGCTCTTT 530
Query 534 GTCAAGAGTATCGTGAGCTCAAGCACCATGGTTTTGACCCCATTCTTGGGTGGGCTGGGA 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 GTCAAGAGTATCGTGAGCTCAAGCACCATGGTTTTGACCCCATTCTTGGGTGGGCTGGGA 590
Query 594 ATGTTCAACAAGCACAGCAGCAAGAGATGATGACCCCTCCAACAGGTCAACGGATGATGG 653
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 591 ATGTTCAACAAGCACAGCAGCAAGAGATGATGACCCCTCCAACAGGTCAACGAATGATGG 650
Query 654 GTTGACTAATAACCTTTGGTTATATTGTTGACAtattcttttttcctgtcttttattt-t 712
||||||| |||| |||| ||| | ||| ||| || ||||||| |||||||||||| |
Sbjct 651 GTTGACTCATAAACTTTTGTT-T---GTTCACA-ATA-TTTTTTC-TGTCTTTTATTTCT 703
Query 713 tcgttactttctatatttttcATGGTCGAAGATAAAAATAAATGTAAGCGAGTAGTTTCA 772
| ||||||||||||||||||| ||| | |||| |||| | ||||| ||||| |||||
Sbjct 704 TTGTTACTTTCTATATTTTTCTTGGCCAAAGAGAAAA-T----GTAAGAGAGTAATTTCA 758
Query 773 TGTTCGTGGATGAACGAAACAGGAGTGTGAATTTCACGTAATTTCTTCCTATTTCCGATA 832
||||||||||||||| ||||| | ||||||||||||||||||||||||||||| | | |
Sbjct 759 TGTTCGTGGATGAACAAAACATG--TGTGAATTTCACGTAATTTCTTCCTATTTACTACA 816
Query 833 TATAAACAAATTTCTTCAAGCT 854
||||| |||||||||||||||
Sbjct 817 CATAAATAAATTTCTTCAAGCT 838
> AT3G18460.1 | Symbols: | PLAC8 family protein | chr3:6333048-6333948
REVERSE LENGTH=555
Length=555
Score = 499 bits (270), Expect = 2e-140
Identities = 445/525 (85%), Gaps = 30/525 (6%)
Strand=Plus/Plus
Query 143 GTTCAA-CATACGGCTAGTCC-GAACAACAAGGTACATTCCCATAACGGTGCACCTGGT- 199
|||||| || |||| || || | ||||| ||||||||||||| ||||||||| ||||
Sbjct 52 GTTCAACCA-ACGGTTA-ACCGGGACAACCAGGTACATTCCCAAAACGGTGCAATTGGTC 109
Query 200 AAGCCGACAAACATACCAACGGGCATACGGGTCAATTACCAACAAACACAAAATCGCTGG 259
|| | ||||||||| |||||||| || |||||| || | ||||| ||||||| ||||
Sbjct 110 AA---G-CAAACATACAAACGGGCAGACCGGTCAA-TA--ACCAAACGCAAAATCTCTGG 162
Query 260 AGTTCTGAACTTTTCGATTGCATGAACGATAGTGAAAATGCCGTGATCACATTG-ATCGC 318
|||||||| ||||||||||||||||| || ||||||||||||||||||||| || | ||
Sbjct 163 AGTTCTGATCTTTTCGATTGCATGAATGACAGTGAAAATGCCGTGATCACA-TGTTTAGC 221
Query 319 TCCATGCGTCACGTTCGGACAGATTGCGGAGGTTGTTGACGAAGGCGCGACGCCTTGTGC 378
||||||||||||||| ||||||||||| ||| | |||||||||||||| || ||||||||
Sbjct 222 TCCATGCGTCACGTTAGGACAGATTGCTGAGATCGTTGACGAAGGCGCTACTCCTTGTGC 281
Query 379 GACAGCTGGGTTGTTGTACGGAGCGATAttttt-ttCCGG-G-GCATGTTTCGTGTATTC 435
||||| |||||||||||| ||| ||||||||| | ||| | || |||| || || ||
Sbjct 282 GACAGGTGGGTTGTTGTATGGAATGATATTTTTCAT-CGGAGTGC-CGTTT-GTCTACTC 338
Query 436 ATACATGTTCAGGGCCAAGATACGAAACAAATATGGGTTACCAGATGCTCCGGCTCCGGA 495
|| ||||||| ||||||| || ||||||||||| |||||||| |||||||||||||| ||
Sbjct 339 ATGCATGTTCCGGGCCAAAATGCGAAACAAATACGGGTTACCGGATGCTCCGGCTCCCGA 398
Query 496 TTGGATCACTCACTTAGTCTGT-ATGCAGTGTGCTCTTTGTCAAGAGTATCGTGAGCTCA 554
|||||||||||||||| ||||| | ||| || ||||||||||||||||||||||||||||
Sbjct 399 TTGGATCACTCACTTATTCTGTGA-GCATTGCGCTCTTTGTCAAGAGTATCGTGAGCTCA 457
Query 555 AGCACCATGGTTTTGACCCCATTCTTGGGTGGGCTGGGAATGTTCAACAAGCACAGCAGC 614
| |||| |||||||||||||| | ||||||||||||||||||| ||| ||||||||||
Sbjct 458 AACACCGTGGTTTTGACCCCAATATTGGGTGGGCTGGGAATGTGCAA---GCACAGCAGC 514
Query 615 AAG-AGATGATGACCCCTCCAACAGGTCAACGGATGATGGGTTGA 658
|| | ||| | | ||||| ||||||||||||||||||||||||
Sbjct 515 CAGTA-ATG-T--CTCCTCCGACAGGTCAACGGATGATGGGTTGA 555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41644107863
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5