BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg479349

Length=575
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G18470.1 | Symbols:  | PLAC8 family protein | chr3:6334822-6...   717    0.0  


> AT3G18470.1 | Symbols:  | PLAC8 family protein | chr3:6334822-6335822 
REVERSE LENGTH=704
Length=704

 Score =  717 bits (388),  Expect = 0.0
 Identities = 458/492 (93%), Gaps = 4/492 (1%)
 Strand=Plus/Plus

Query  25   CTACTTTACAATGGAAAAGCAATGGACTTCTGGTCTTTTCAGCTGCATGGAAGACAGCGA  84
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  115  CTACTTTACAATGGAAAAGCAATGGACTTCTGGTCTTTTCAGCTGCATGGAAGACAGTGA  174

Query  85   AAATGCTTGCCTCACATGTTTCTGCCCGTGCGTCACTTTCGGACGGATCGCGAATATTGC  144
            || |||||||||||||||||||||||| |||||||||||||||||||||||| | ||| |
Sbjct  175  AACTGCTTGCCTCACATGTTTCTGCCCATGCGTCACTTTCGGACGGATCGCGGACATTTC  234

Query  145  CGATGAAGGAAGGACAGGTTGTGGGAGTTGTGGGGTTTTTTACGGGCTGATATGTTTTGT  204
            ||| ||||||||||| ||||||||||| |||||||| ||||||||||| ||||||| |||
Sbjct  235  CGACGAAGGAAGGACCGGTTGTGGGAGATGTGGGGTATTTTACGGGCTAATATGTTGTGT  294

Query  205  GGTCGGCTTGCCTTGCTTGTTCTCATGTACTTACCGGACCAAGATCCGAAGCAAATTTGG  264
            ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct  295  GGTCGGCTTACCTTGCTTGTTCTCATGCACTTACCGGACCAAGATCCGAAGCAAATTCGG  354

Query  265  GTTACCGGAGTCTCCAGCTTCGGATTGCCTCACTCACTGCTTTTGTGAATGTTGTGCTCT  324
            |||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||
Sbjct  355  GTTACCGGAGTCTCCAACTTCGGATTGCGTCACTCACTTCTTTTGTGAATGTTGTGCTCT  414

Query  325  TTGCCAAGAATACCGTGAACTCAAAACCCGTGGTCTTGACCCCTCTCTTGGATGGAATGG  384
            |||||||||| ||||||||||||||||||||||||||||||||||| |||| |||| |||
Sbjct  415  TTGCCAAGAACACCGTGAACTCAAAACCCGTGGTCTTGACCCCTCTATTGGGTGGAGTGG  474

Query  385  AAACATGCAACGGACGATGGCTCCTCCTATGAGTCAGCAGATGATGGGTTGATTTAA-AA  443
            ||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct  475  AAATATGCAACGGACGATGGCTCCTCCTATGAGTCAGCAGATGATGGGTTGATT-AAGAA  533

Query  444  GATAAATGATTTTCAATATGATTTAAATTAAACTAGG-GGTTCACAAAAACAGCACTTTT  502
            |||   |||||| ||||||||||| ||||||| || | ||||||| ||||||||||||||
Sbjct  534  GATTTCTGATTTGCAATATGATTTGAATTAAA-TAAGTGGTTCACGAAAACAGCACTTTT  592

Query  503  AAGTGTAGtttt  514
            ||||||||||||
Sbjct  593  AAGTGTAGTTTT  604



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27628780850


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5