BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg479354

Length=404
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G18510.1 | Symbols:  | unknown protein; Has 15 Blast hits to...   568    2e-161


> AT3G18510.1 | Symbols:  | unknown protein; Has 15 Blast hits 
to 15 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:6355664-6356153 FORWARD LENGTH=420
Length=420

 Score =  568 bits (307),  Expect = 2e-161
 Identities = 386/421 (92%), Gaps = 18/421 (4%)
 Strand=Plus/Plus

Query  1    AAATTTGGAATCGAAGGAAGAGGAGAGAAGAG--AGTGAGG--A--AATGGCGTTGAGCT  54
            ||| ||||||||||||||||| |||| |||||  |||||||  |  ||||||||||||||
Sbjct  1    AAAGTTGGAATCGAAGGAAGAAGAGACAAGAGAAAGTGAGGAAATTAATGGCGTTGAGCT  60

Query  55   CGATGACATGGGGTTACGCACGGATCATAGCTGGAACACTTCTAGG-GGGGACTCTCGGA  113
            | ||||||||||||||||||||||||||||||||||||||||| || |||| | ||||||
Sbjct  61   CAATGACATGGGGTTACGCACGGATCATAGCTGGAACACTTCTCGGCGGGG-CCCTCGGA  119

Query  114  TTCTACGTAATGCATCGCATCGAAGTTAGCTACAAGATGAGGATGGAGGAAGCGTTGAAT  173
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  120  TTCTACGTAATGCATCGCATCGAAGTTAGCTACAAGATGAGGATGGAGGAAGCGTTGAAT  179

Query  174  CAATACGAGAAGGATATGCAGAAGAGACAAGAAGAAGAGAATCTTAGTCAGATCAATGAA  233
            |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct  180  CAATACGAGAAGGATATGCAGAAGAGACAAGAAGAAGAAAATCTTATTCAGATCAATGAA  239

Query  234  GAATCCGTTTAGCTT-TCTCTTGGTACCATGCCTTCAAAGTGTTCGATGAAATGCCCAAC  292
            ||||| ||||||||| | |||||||| |||||||||||||||||||||||||||||||||
Sbjct  240  GAATCTGTTTAGCTTATTTCTTGGTAGCATGCCTTCAAAGTGTTCGATGAAATGCCCAAC  299

Query  293  AGAtgttttatgttgtttttact------ct-t--tgtgtttttcggtttggtttgGTCT  343
            |||||||| ||| |||||| |||      || |  ||| |||||||||||||||||||||
Sbjct  300  AGATGTTTGATGCTGTTTTGACTTTTTTTCTCTCATGTATTTTTCGGTTTGGTTTGGTCT  359

Query  344  GGCATTATGAAAAGGTTTCATTTGTCTTTGGTTTAAAAACTATATACCATGATGGTGGAC  403
            ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  360  GGCATTATGAAAATGTTTCATTTGTCTTTGGTTTAATAACTATATACCATGATGGTGGAC  419

Query  404  C  404
            |
Sbjct  420  C  420



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19101744620


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5