BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479356
Length=1746
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18520.2 | Symbols: HDA15, ATHDA15 | histone deacetylase 15 ... 2708 0.0
AT4G09784.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 233 4e-60
> AT3G18520.2 | Symbols: HDA15, ATHDA15 | histone deacetylase 15
| chr3:6361176-6365615 FORWARD LENGTH=2082
Length=2082
Score = 2708 bits (1466), Expect = 0.0
Identities = 1660/1752 (95%), Gaps = 19/1752 (1%)
Strand=Plus/Plus
Query 4 TTCAGCTGGTTAGTAG-TTTCAGTGACTACTGAGGTAA-AATGGTTGTAGAAACTCTTGA 61
|||||||||||||||| ||| ||||||||||||||||| |||||||||||||||| | ||
Sbjct 132 TTCAGCTGGTTAGTAGTTTTGAGTGACTACTGAGGTAACAATGGTTGTAGAAACTATCGA 191
Query 62 GAGGTCCTGTGAGGGTTCAAAGAGAAGACATGTGAATGGTGGTGATGTCGCTGTTCCTTG 121
|||||| ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||
Sbjct 192 GAGGTCTTGTGAGGGTTCAAAGAGAAGACATGTGAACGGTGGAGATATCGCTGTTCCTTG 251
Query 122 TTCGGGAGATGAGT-TAAGCAATGGAGATATAAATGCAGCTCCTGGAGTTTCAGCAAAAA 180
||||||||| |||| | ||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 252 TTCGGGAGAAGAGTGT-AGCAATGGAGATATAAATGTAGCTCCTGGAGTTTCAGCGAAAA 310
Query 181 GAGCTAGGGTTTCAAGAGAAATGACGTTTGAAGATATTTACGGTGCtgatgcattgctga 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 311 GAGCTAGGGTTTCTAGAGAAATGACGTTTGAAGATATTTACGGTGCTGATGCATTACTCA 370
Query 241 atgatgatgatgatgaggaggatgattgtgatTGGGAACCTGTGCAGGCGCCTGTGGAGT 300
||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 371 ATGATGACGATGATGAGGATGATGATTGTGATTGGGAACCTGTGCAGGCGCCTATGGAGT 430
Query 301 TTGTAAACTGGTGTTGCGTCAATTGCACTATGTCGAACCCTGGTGATATGGTCCACTGTT 360
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 TTGTAAAATGGTGTTGTGTCAATTGCACTATGTCGAACCCTGGTGATATGGTCCACTGTT 490
Query 361 ATATATGCGGTGAACACAAGGAATCTGGCATCCTGAGGCATGGATATTTAGCGTCTCCtt 420
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 491 GTATATGCGGTGAGCACAAGGAATCTGGCATTTTGAGGCATGGATATTTAGCGTCTCCCT 550
Query 421 tttttAAAGACACTGGTCTCATTGAAGTAGAAGAGAAATATGGAGGAAGCTCATCTGCAA 480
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 551 TTTTTAAAGACACTGGTCTCATTGAAGTCGAGGAGAAATATGGAGGAAGCTCATCTGCAA 610
Query 481 CCAGCTCGACAGCTGTTGGGTTCGACGAGAGAATGTTGCTACACTCAGAATTTGAAGTGA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 CCAGCTCGACAGCTGTTGGGTTCGACGAGAGAATGTTGCTACACTCAGAATTTGAAGTGA 670
Query 541 AGGCACATCCACATCCAGAGAGACCTGATCGTCTTCGAGCTATAGCTGCTAGTCTTGCCA 600
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 AGGCACAACCACATCCAGAGAGACCTGATCGTCTTCGAGCTATAGCTGCTAGTCTTGCCA 730
Query 601 CAGCTGGTGTTTTTCCTGGAAGATGCTTGCCTATTAATGCAAGAGAAATCACGAAACAAG 660
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 731 CAGCTGGTGTTTTTCCTGGAAGATGCTTGCCTATCAATGCAAGGGAAATCACGAAACAAG 790
Query 661 AACTCCAGATGGTCCACACTTCAGAGCATGTTGATGCTGTTGATACTACAAGCCAGCTTC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 AACTCCAGATGGTCCACACTTCAGAGCATGTTGATGCTGTTGATACTACAAGCCAGCTTC 850
Query 721 TCTATAGCTACTTCACCTCTGACACGTATGCTAATGAGTATTCAGCACGTGCTGCTAGAC 780
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 851 TCTATAGCTACTTCACCTCTGACACATATGCTAATGAGTATTCAGCACGTGCTGCTAGAC 910
Query 781 TTGCAGCAGGTTTGTGCGCTGATCTAGCAACAGAAATTTTCACTGGCCGTGTAAAAAATG 840
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 911 TTGCAGCAGGTTTGTGCGCTGATCTAGCTACAGATATTTTCACTGGCCGTGTAAAAAATG 970
Query 841 GTTTCGCTTTGGTTAGACCTCCGGGTCATCATGCTGGCATCAGGCATGCTATGGGGTTTT 900
|||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 971 GTTTTGCTTTGGTTAGACCTCCCGGTCATCATGCTGGCGTCAGGCATGCTATGGGGTTTT 1030
Query 901 GCCTTCACAATAATGCAGCCGTTGCTGCATTAGTAGCACAAGCAGCAGGGGCAAAGAAGG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 GCCTTCACAATAATGCAGCCGTTGCTGCATTAGTAGCACAAGCAGCAGGGGCAAAGAAGG 1090
Query 961 TGCTGATTTTGGACTGGGATGTACATCATGGAAATGGAACTCAAGAGATATTCGAACAAA 1020
|||||||| ||||||||||||| |||||||| || ||||| |||||||||||||||||||
Sbjct 1091 TGCTGATTGTGGACTGGGATGTCCATCATGGCAACGGAACCCAAGAGATATTCGAACAAA 1150
Query 1021 ACAAATCTGTATTGTACATATCCTTGCACAGACATGAGGGAGGACACTTCTATCCCGGTA 1080
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1151 ACAAATCTGTATTGTACATATCCTTGCACAGACATGAGGGAGGAAACTTCTATCCCGGTA 1210
Query 1081 CTGGAGCTGCTGATGAGGTTGGTACAAATGGTGGGGAAGGTTATTGTGTAAATGTTCCTT 1140
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
Sbjct 1211 CTGGAGCTGCTGATGAGGTTGGTTCTAATGGTGGGGAAGGTTATTGTGTAAATGTTCCAT 1270
Query 1141 GGAGTTGTGGTGGAGTTGGTGATAAAGACTATATCTTTGCGTTTCAACATGTGGTTCTTC 1200
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1271 GGAGTTGCGGTGGAGTTGGGGATAAAGACTATATCTTTGCGTTTCAACATGTGGTTCTCC 1330
Query 1201 CCATAGCTTCTGCATTCTCTCCAGATTTTGTCATCGTATCAGCGGGATTTGATGCTGCTA 1260
|||||||||||||||| |||||||||||||||||| |||| |||||||||||||| ||||
Sbjct 1331 CCATAGCTTCTGCATTTTCTCCAGATTTTGTCATCATATCTGCGGGATTTGATGCGGCTA 1390
Query 1261 GAGGAGACCCATTAGGATGCTGTGATGTGACTCCGGCTGGCTATTCTCGAATGACACAGA 1320
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1391 GAGGAGACCCACTAGGATGCTGTGATGTGACTCCGGCTGGCTATTCTCGAATGACACAGA 1450
Query 1321 TGTTGGGTGATCTGTGCGGTGGGAAAATGCTAGTTATTCTGGAAGGCGGCTACAATCTTC 1380
|||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1451 TGTTGGGTGATCTGTGTGGTGGGAAAATGCTAGTTATTCTCGAGGGCGGCTACAATCTTC 1510
Query 1381 GCTCCATATCTTCTTCTGCAACAGCAGTGATCAAGGTGCTTCTGGGTGAAATTCCGGAGA 1440
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1511 GCTCCATATCTGCTTCTGCAACAGCAGTGATCAAGGTGCTTCTGGGTGAAAATCCGGAGA 1570
Query 1441 ATAACCTGCCCATCGC-AGCCACGCCTTCAAG-AGAAGGCCTACAAACTGTTCTTGATGT 1498
| | |||||||||| | ||||||||||| | || ||||| |||||||||||||||||
Sbjct 1571 ACGAGTTGCCCATCGCCA-CCACGCCTTCA-GTAGCCGGCCTGCAAACTGTTCTTGATGT 1628
Query 1499 ACTGAATATTCAAATGAAGTTCTGGCCATCACTTGCTATCAGCTACTCCAAATTACTCTC 1558
||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 ACTGAATATCCAACTGGAGTTCTGGCCATCACTTGCTATCAGCTACTCCAAATTACTCTC 1688
Query 1559 AGAGTGGGAAGCACGTCTGATCGAAAACaaaa---aaaa-TCAGATGAAAAGGAAGCTTG 1614
||||| |||||||||||||||||||||||||| |||| |||||||||||||||| |||
Sbjct 1689 AGAGTTGGAAGCACGTCTGATCGAAAACAAAAGTGAAAAATCAGATGAAAAGGAAGGTTG 1748
Query 1615 TTCGGGTTCCGACATGGTGGAAATGGGGACGAAAGAAGCTTTTGTACAAGTTTCTCTCAG 1674
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1749 TTCGGGTTCCGACATGGTGGAAATGGGGACGAAAGAAGCTTTTGTACAACTTTCTCTCGG 1808
Query 1675 CGCGTATGATTTCAAGATCAAAATGATTTATGATTTTAGAAAGCATTCTTCCTAATCCAT 1734
| |||||||||||||||||||| | | ||||||||||||||||||||||||||| |
Sbjct 1809 CTCGTATGATTTCAAGATCAAA--G-T----GATTTTAGAAAGCATTCTTCCTAATCCGT 1861
Query 1735 CGTAGGAACTGT 1746
|||||||| |||
Sbjct 1862 CGTAGGAATTGT 1873
> AT4G09784.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana protein
match is: histone deacetylase 15 (TAIR:AT3G18520.2); Has 120
Blast hits to 120 proteins in 17 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 120; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr4:6162253-6162613
FORWARD LENGTH=213
Length=213
Score = 233 bits (126), Expect = 4e-60
Identities = 136/141 (96%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 531 TTTGAAGTGAAGGCACATCCACATCCAGAGAGACCTGATCGTCTTCGAGCTATAGCTGCT 590
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 13 TTTGAAGTGAAGTCACATCCACATCCAGAGAGACCTGATCGTCTTCGAGCTATAGCTGCT 72
Query 591 AGTCTTGCCACAGCTGGTGTTTTTCCTGGAAGATGCTTGCCTATTAATGCAAGAGAAATC 650
||||||| ||||||||||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct 73 AGTCTTGACACAGCTGGTGTTTTCCCTGGAAGATGCTTGCCTATTAATGCAGGCGAAATC 132
Query 651 ACGAAACAAGAACTCCAGATG 671
|||||||||||||||||||||
Sbjct 133 ACGAAACAAGAACTCCAGATG 153
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86344937400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5