BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479362
Length=662
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18570.1 | Symbols: | Oleosin family protein | chr3:6395860... 957 0.0
> AT3G18570.1 | Symbols: | Oleosin family protein | chr3:6395860-6396606
REVERSE LENGTH=747
Length=747
Score = 957 bits (518), Expect = 0.0
Identities = 605/646 (94%), Gaps = 9/646 (1%)
Strand=Plus/Plus
Query 1 AAAACAACAATAGCTCTCTACAATGGCGGAAAGGTTCTCTAGCGGCGAGGCCCAATATTG 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 13 AAAACAACAATCGCTCTCTACAATGGCGGAAAGGTTCTCTAGCGGCGAGGCCCAATATTG 72
Query 61 GCCC-ATCTACGGTAGCTCCACCACCACCCCCACTGTTAGCAACAGCCCCATCGCGTCGG 119
|||| || || ||||| |||| ||||| |||| |||||||||||||||||| |||||
Sbjct 73 GCCCAAT-TATGGTAG---CACCGCCACCACCACCGTTAGCAACAGCCCCATCTCGTCGT 128
Query 120 TTTTCCATCAGCTCCGATCTCATTCTCCAACCTCCTCGCAGCTCTTTGGTTTCCTCGCTC 179
||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 129 TTTTCCATCAGCTCCGATCCCATTCACCAACATCCTCGCAGCTCTTTGGTTTCCTCGCTC 188
Query 180 TCTTTATCTCCAGTGGAATCCTCCTCTTCCTCCTCGGTGTAAGCGTCACCGCCGCCGTGC 239
|||||||||||| ||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 189 TCTTTATCTCCACTGGCATCCTCCTCTTCCTCCTTGGTGTAAGCGTCACCGCTGCCGTGC 248
Query 240 TCGGCTTCATTGTGTTTCTTCCATTGATCATCATCTCGAGTCCGATATGGATTCCTGTTT 299
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 249 TCGGCTTCATTGTCTTTCTTCCATTGATCATCATCTCGAGTCCGATATGGATTCCCGTTT 308
Query 300 TTGTCCTCGTGGGCGGGTTCTTAACGGTCTCTGGATTTCTGGTCGGAACGGTGACAGTCC 359
||||| |||| |||||||||||||||||||| |||||||| |||||||||||| | |
Sbjct 309 TTGTCGTCGTTGGCGGGTTCTTAACGGTCTCCGGATTTCTTGTCGGAACGGTGGCTTTAG 368
Query 360 TGTCGTGGACGTACCGCTATTTCCGGGGAATGCACCCGGTTGGATCGAATCAGATGGATT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 TGTCGTGGACGTACCGCTATTTCCGGGGAATGCACCCGGTTGGATCGAATCAGATGGATT 428
Query 420 ATGCACGTAGTCGGATCTATGACACGGCCTCTCACGTCAAAGATTACGCTAGAGAATACG 479
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 429 ATGCACGTAGTAGGATCTATGACACGGCATCTCACGTCAAAGATTACGCTAGAGAATACG 488
Query 480 GTGGTTACTTCCATGGCAGGGCTAAAGATGCGGCCCCTGGTGCTTGACCTGAACCGGTTG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 GTGGTTACTTCCATGGCAGGGCTAAAGATGCGGCCCCTGGTGCTTGACCTGAACCGGTTG 548
Query 540 GTATAGTCTGGTTCAGGGTAGTATTAACCGATCGCGGTACGATTTATGGAGCAGGAACAC 599
||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||
Sbjct 549 GTATAGTCTGGTTCAGGGTAGTATTAACCGATCACGGTTCGATTTATGGAGGAGGAACAC 608
Query 600 GGTTCATGGTATTATACTATATTTTCTTATTTTGTT-CCGTT-ATA 643
||||||||||| ||| || |||||||||||||||| ||||| |||
Sbjct 609 GGTTCATGGTAATAT--TACATTTTCTTATTTTGTTTCCGTTTATA 652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31999151639
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5