BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479363
Length=803
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18580.1 | Symbols: | Nucleic acid-binding, OB-fold-like pr... 1098 0.0
> AT3G18580.1 | Symbols: | Nucleic acid-binding, OB-fold-like
protein | chr3:6396931-6398190 REVERSE LENGTH=785
Length=785
Score = 1098 bits (594), Expect = 0.0
Identities = 738/804 (92%), Gaps = 24/804 (3%)
Strand=Plus/Plus
Query 1 GGCACTTTGTCCCAAAATGTTCCAATCACTCTCTCCGCTCTTTAGACCTTTAGGGTTTAA 60
|||||||| | ||||||| ||| ||||||| |||||||||||||| |||||||||||||
Sbjct 1 GGCACTTTATTCCAAAATATTCTAATCACTTTCTCCGCTCTTTAGCCCTTTAGGGTTTAT 60
Query 61 GACGTTAAACCCAGATTCCAACATTTCTCGTTCAATTCGA-TCTGAAATTCTCAGTGAAC 119
||||||||||||||| ||||||| || | | | |||||| || |||| ||||||||||
Sbjct 61 GACGTTAAACCCAGAATCCAACA-TT-T-G-ACGATTCGATTC-GAAAATCTCAGTGAAG 115
Query 120 ATAAAAAATGGCGAATTCAGTGGCTACGCTTTCGAGAAGACTCTATCGATCTCTTCTCTC 179
|| ||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 116 ATCGAAAATGGCGAATTCAATGGCTACACTTTCTAGAAGACTCTATCGATCTCTTCTATC 175
Query 180 GAACCCTAGAATTTCTCAATCTTCCATGTCTTTCTGCACCAACAACATCTCCTCCCGAGA 239
||||||||||||||||||| |||||||||||||||| |||||||||||| | |||| |||
Sbjct 176 GAACCCTAGAATTTCTCAAGCTTCCATGTCTTTCTGTACCAACAACATCACTTCCCCAGA 235
Query 240 AGACTCCGACTTTGACGAGTTATCTGCTAACTCAGATACTGAATCCCCCATTGAACCCAA 299
|||||||||||||||||||||| | | || | | ||||||||||| ||
Sbjct 236 AGACTCCGACTTTGACGAGTTA---G-------A-AT-C-G-----CCCATTGAACCAAA 277
Query 300 GGCTTCTGATCCAGTTTCTCGATTTTCCGGAGAAGAACGCGTGATGGAAGAGCGTCCACT 359
||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 278 GGCCTCAGATCCAGTTTCTCGATTTTCCGGAGAAGAACGCGTTATGGAAGAGCGTCCACT 337
Query 360 CGAAAATGGCCTTGACTCTGGCATTTTCAAGGCGATATTGGTGGGGCAAGTGGGTCAGCT 419
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 338 CGAAAATGGCCTTGACTCTGGCATTTTCAAGGCAATATTGGTGGGGCAAGTGGGTCAGCT 397
Query 420 TCCTCTGCAGAAGAAGCTTAAGAGTGGTAGAACAGTCACACTCTTCTCTGTAGGAACTGG 479
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 398 TCCTCTGCAGAAGAAGCTTAAGAGTGGTAGAACTGTCACTCTCTTCTCTGTAGGAACTGG 457
Query 480 TGGGATCAGGAACAACCGGAGACCGCTTATTAACGAAGACCCGAGAGAGTATGCGAGCCG 539
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 458 TGGGATCAGGAACAACCGGAGACCGCTTATTAACGAAGATCCGAGAGAGTATGCGAGCCG 517
Query 540 GTCTGCGGTGCAGTGGCACCGTGTCTCTGTTTACCCTGAACGCTTGGCAGAGCTTGTGTT 599
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 518 GTCTGCGGTGCAGTGGCACCGTGTCTCTGTTTACCCTGAACGCTTGGCAGATCTTGTGTT 577
Query 600 GAAGAATGTTGAACCAGGTACGGTTATCTACTTGGAGGGTAATCTGGAGACAAAGATTTT 659
||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||| ||
Sbjct 578 GAAGAATGTTGAACCCGGTACTGTTATCTACTTAGAGGGTAATCTGGAGACGAAGATATT 637
Query 660 CACTGATCCAGTCACTGGTTTGGTTCGACGTATAAGAGAAGTAGCAATTCGTAGAAACGG 719
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 CACTGATCCTGTCACTGGTTTGGTTCGACGTATAAGAGAAGTAGCAATTCGTAGAAACGG 697
Query 720 CCGAGTCGTGTTTTTGGGAAAAGCCGGTGATATGCAGCAACCAAGTTCTGCTGAGCTTAG 779
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 698 CCGAGTTGTGTTTTTGGGAAAAGCCGGTGATATGCAGCAACCGAGTTCTGCTGAGCTTAG 757
Query 780 AGGCGTTGGCTATTACTGAATTTT 803
|||||||||||| |||||| ||||
Sbjct 758 AGGCGTTGGCTACTACTGATTTTT 781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39082166366
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5