BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479365
Length=1904
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18600.1 | Symbols: | P-loop containing nucleoside triphosp... 2656 0.0
> AT3G18600.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:6399571-6403348
REVERSE LENGTH=2006
Length=2006
Score = 2656 bits (1438), Expect = 0.0
Identities = 1714/1843 (93%), Gaps = 35/1843 (2%)
Strand=Plus/Plus
Query 22 CTCTCTCAACTTCTTCAAAAGCAAATTTCTTCGATTCTCTGAGCTCTCTCGCATCC--TT 79
|||||||||||||||| | ||||||||||||||||||||||||||||||| ||||| ||
Sbjct 39 CTCTCTCAACTTCTTCCACAGCAAATTTCTTCGATTCTCTGAGCTCTCTCCCATCCTTTT 98
Query 80 CAAGTGGCTTCGTTTCTAAAAAATTGATTGGTTTG-AGAAAGAGGAAACATGGTTGAATC 138
||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||
Sbjct 99 CAAGTGGCTTCGTTTCTAAAAAATTGATTGG-TTGAAGAAAGTGGAAACATGGTTGAATC 157
Query 139 GGACAAGACATCCGTTGAAGAGCTGAAGAAGAGGGTAAGGAAGAGGAA-TCGTGGGAAGA 197
||||||| |||||||||||||||||||||||||||| ||||||| ||| ||||||||||
Sbjct 158 GGACAAGTCATCCGTTGAAGAGCTGAAGAAGAGGGTTAGGAAGA-GAAGCCGTGGGAAGA 216
Query 198 AGAATGAGCAGCAAAAAGCGGAGGAAGATTCCCACAGTGTAGAGGAAAACGCTGACGAAA 257
|||||||||||||||| || || ||| | |||||| |||||||||||||||||| ||||
Sbjct 217 AGAATGAGCAGCAAAAGGCTGAAGAAAAAACCCACACTGTAGAGGAAAACGCTGATGAAA 276
Query 258 AGCAGAAGAAGAGTGAAAAGAAGGTTAAGAAAGTGAAGTTGCAAGGGAGAGGCAAAACCg 317
|||||||||||||||||||||||||||| | ||| | ||||||||||| ||
Sbjct 277 CGCAGAAGAAGAGTGAAAAGAAGGTTAAG--A---AAG-T------GAGAGGCAAAATCG 324
Query 318 aggaagaggaagacgaagaggtggaagcaatggaagatggtgaagaagagaagaaTCCCG 377
||||||||||||| || |||||||||||||||||||||||||||| ||||||||| |
Sbjct 325 AGGAAGAGGAAGA--AA-AGGTGGAAGCAATGGAAGATGGTGAAGATGAGAAGAATATTG 381
Query 378 TGATTGTCGGAAAAGGGATAATGACTGATGAGACTTTTGACTCCCTGGACTTATCTGAGC 437
|||||||||| ||||||||||||||| ||| ||||||||| ||||| |||||||||||||
Sbjct 382 TGATTGTCGGGAAAGGGATAATGACTAATGTGACTTTTGATTCCCTCGACTTATCTGAGC 441
Query 438 AAACGTCTATAGCTATCAAGGAGATGGGCTTTCAATACATGACGCAAATTCAAGCTGGGT 497
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 442 AAACTTCTATAGCTATCAAGGAGATGGGCTTTCAGTACATGACGCAAATTCAAGCTGGAT 501
Query 498 CAATTCGGCCCCTTTTGGAGGGGAAGGATGTTCTTGGTGCTGCCAGGACTGGTTCTGGTA 557
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 502 CAATTCAGCCCCTTTTGGAGGGGAAGGATGTTCTTGGTGCTGCCAGAACTGGTTCTGGTA 561
Query 558 AAACTCTTGCTTTTCTCATACCGGCTGTAGAGTTGCTGCTTAAACATCATTTTTCTCCTC 617
||||||||||||||||||| |||||||| ||||||||| ||||| | | ||| |||||||
Sbjct 562 AAACTCTTGCTTTTCTCATTCCGGCTGTTGAGTTGCTGTTTAAAGAGCGTTTCTCTCCTC 621
Query 618 GCAACGGGACTGGTGTAATTGTTATTTGCCCCACAAGGGAACTTGCTATCCAGACAAAAA 677
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 622 GCAACGGGACTGGTGTGATTGTTATTTGCCCCACAAGGGAACTTGCTATCCAGACTAAAA 681
Query 678 ATGTGGCAGAGGAGTTACTCAAGCATCATTCACAGACAGTCGGCATGGTTATTGGTGGCA 737
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 682 ATGTGGCGGAGGAGTTACTCAAGCATCATTCACAGACAGTCAGCATGGTTATTGGTGGCA 741
Query 738 ATAACAGAAGGTCGGAAGCACAACGCATTGCGAATGGTTCAAACTTGTTGATAGCAACTC 797
||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||
Sbjct 742 ATAACAGAAGGTCGGAAGCACAACGCATTGCCAGTGGTTCAAACTTGGTGATAGCAACTC 801
Query 798 CTGGGCGTCTTCTTGACCATCTTCACAATACAAAGGCTTTCATTTATAAACACTTGAAGT 857
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 802 CTGGTCGTCTTCTTGACCATCTTCAGAATACAAAGGCTTTCATTTATAAACACTTGAAGT 861
Query 858 GCCTTGTGATTGATGAAGCTGATAGGATACTGGAAGATAATTTTGAGGAAGACATGAATA 917
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 862 GCCTTGTGATCGATGAAGCTGATAGGATACTGGAAGAGAATTTTGAGGAAGACATGAATA 921
Query 918 AGATTCTAAAGATTTTACCAAAGACTAGGCAAACTGCGTTATTCTCCGCTACCCAGACCT 977
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 922 AGATTCTAAAGATTTTACCAAAGACTAGGCAAACTGCGTTATTCTCTGCCACCCAGACCT 981
Query 978 CTAAGGTTAAAGATCTTGCTCGGGTGTCACTGACATCACCTGTTCATGTTGATGTTGATG 1037
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||
Sbjct 982 CTAAGGTTAAAGATCTTGCTCGGGTGTCATTGACATCACCTGTTCATGTGGATGTCGATG 1041
Query 1038 ATGGCAGACGCAAGGTGACAAATGAAGGATTGGAGCAAGGCTATTGTGTTGTTCCGAGCA 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1042 ATGGCAGACGCAAGGTGACAAATGAAGGATTGGAGCAAGGCTATTGTGTTGTTCCGAGCA 1101
Query 1098 AA-AATAGACTTATCCTTCTAATTACCTTTTTAAAAAAGAACCCAAATAAAAAGATTATG 1156
|| || |||||||||||||||||| ||||||| |||||||||| ||||||||||||||||
Sbjct 1102 AACAA-AGACTTATCCTTCTAATTTCCTTTTTGAAAAAGAACCTAAATAAAAAGATTATG 1160
Query 1157 GTCTTTTTCTCGACTTGCAAGTCCGTACAATTCCATGCTGAAATCATGAAAATAAGCAAT 1216
|| |||||||||||||||||||| |||||||||||| | |||||||||||||||||| |
Sbjct 1161 GTATTTTTCTCGACTTGCAAGTCGGTACAATTCCATACGGAAATCATGAAAATAAGCGAC 1220
Query 1217 GTGGATTTCTGTGATATCCATGGAGGCCTAGATCAGAACAGAAGAACTAAAACCTTTTTT 1276
|||||| ||| |||||| ||||||||| | |||||||||||||||||||||||||||||
Sbjct 1221 GTGGATGTCTCTGATATTCATGGAGGCATGGATCAGAACAGAAGAACTAAAACCTTTTTC 1280
Query 1277 GACTTCATGAAAGCAAAGAAAGGTATCTTGTTATGTACTGATGTTGCTGCTCGTGGTCTC 1336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1281 GACTTCATGAAAGCAAAGAAAGGTATCTTGTTATGTACTGATGTTGCTGCTCGTGGTCTC 1340
Query 1337 GATATTCCTTCAGTGGACTGGATTATTCAGTATGATCCACCAGACAAGCCAACGGAATAT 1396
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1341 GATATTCCTTCCGTGGACTGGATTATACAGTATGATCCACCAGACAAGCCAACGGAATAT 1400
Query 1397 ATCCATAGGGTTGGTCGAACAGCCCGTGGAGAGGGAGCAAAGGGAAAGGCATTGCTTGTC 1456
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1401 ATCCATAGGGTTGGTCGAACAGCCCGTGGAGAAGGAGCAAAGGGAAAGGCATTACTTGTC 1460
Query 1457 TTGATTCCTGAAGAGCTCCAGTTTATTCGCTACCTGAAGGCTGCGAAAGTACCTGTTAAA 1516
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1461 TTGATTCCTGAAGAACTTCAGTTTATTCGCTACCTGAAGGCTGCGAAAGTACCTGTTAAA 1520
Query 1517 GAGCTTGAGTTCAATGAGAGGAAGCTTA-TGAATGTT-AGATCTGAGCTGGAGAAATGTG 1574
||||||||||||||||||| || ||||| | |||||| | ||||| ||||||||||||||
Sbjct 1521 GAGCTTGAGTTCAATGAGAAGAGGCTTAGT-AATGTTCA-ATCTGCGCTGGAGAAATGTG 1578
Query 1575 TTGCCGAAG-ACTACAATCTGAACAAGTTAGCCAAGGATGCGTACCGGGCTTATATCTCA 1633
||||| ||| ||||||||||||||||||||||||| ||||||||| |||||||| |||||
Sbjct 1579 TTGCC-AAGGACTACAATCTGAACAAGTTAGCCAAAGATGCGTACAGGGCTTATCTCTCA 1637
Query 1634 GCATACAATTCACACTCTTTGAAAGACATCTTTAATGTTCACCGACTCGATCTCCAGGAG 1693
||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||
Sbjct 1638 GCATACAATTCACACTCTTTGAAAGACATCTTTAATGTTCACCGACTTGACCTCCTGGCT 1697
Query 1694 GTTGCGGCATCGTTCTGCTTCTCTGCGCCGCCTAAGGTGAATCTGAACATAGAAAGTCGA 1753
||||| | |||||||||||||||| |||||||||| ||||||||||||||||||||| ||
Sbjct 1698 GTTGCTGAATCGTTCTGCTTCTCTTCGCCGCCTAAAGTGAATCTGAACATAGAAAGTGGA 1757
Query 1754 GCTGGGAAGGTGAGGAAGGCGA-A--GCAACAAGGTCGCAATGGCTTCAGTCCTTACAAT 1810
|||||||||||||||||||||| | ||| |||||||||||||||||||||||||||| |
Sbjct 1758 GCTGGGAAGGTGAGGAAGGCGAGAAAGCAGCAAGGTCGCAATGGCTTCAGTCCTTACAGT 1817
Query 1811 CCCTATGGCAAGTCCACACCTA-AAT--AGGCATAAAGTGTCA 1850
|||||||||||||||||||||| || |||||||||||||||
Sbjct 1818 CCCTATGGCAAGTCCACACCTACAAAGGAGGCATAAAGTGTCA 1860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94276623510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5