BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479366
Length=1856
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin lik... 1784 0.0
AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like... 198 1e-49
> AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like
2 | chr3:6404083-6407822 REVERSE LENGTH=2098
Length=2098
Score = 1784 bits (966), Expect = 0.0
Identities = 1255/1386 (91%), Gaps = 54/1386 (4%)
Strand=Plus/Plus
Query 502 GATGATTCTTCTTCAGACGAGGAATCTGCCCC--TGCGAAGAAGCAA-CC--C-GCAGCC 555
||||| ||||||||||| |||||| | |||| || ||||||| || || | |||
Sbjct 715 GATGAATCTTCTTCAGATGAGGAAAC--CCCCGTTGTGAAGAAG-AAGCCAACAACAGTT 771
Query 556 CTTAAGAATACCAAAGCAGATAGCAGTTCATCAGAGGAGGAATCTTCTTCGGACGAGGAA 615
||||| || |||| ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 772 GTTAAGGATGCCAAGGCAGAAAGCAGTTCATCAGAGGAGGAATCTTCTTCGGACGATGAA 831
Query 616 CTC-ACACCTGCCATTAAGCCAACAGTTGTTAAGAATATC-AAACCAGCTGCAAAAGATT 673
| | |||||||||| ||||||||||||||||||||| | |||||||||||||||||||
Sbjct 832 C-CAACACCTGCCAAGAAGCCAACAGTTGTTAAGAAT-GCTAAACCAGCTGCAAAAGATT 889
Query 674 CATCATCCTCAGAGGAAGATTCTGATGAGGAGGAAAGTGATGATGAAAAACCTCCTACAA 733
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 890 CATCATCCTCAGAGGAAGATTCTGATGAGGAGGAAAGTGATGATGAAAAACCTCCTACGA 949
Query 734 AGAAGGCTAAAGTTTCATTAACAAAAACATCTAAAAAAGAAAGCTCTAGTGAGGAATCTA 793
|||||||||||||||||| ||||||| |||||| |||||||||||||||| |||||||
Sbjct 950 AGAAGGCTAAAGTTTCAT---CAAAAACTTCTAAACAAGAAAGCTCTAGTGATGAATCTA 1006
Query 794 GTGATGAATCTGATAAGGAGGAGAGTAAAGAAGAGAAAGTGACCCCAAAGAAAAAGGACT 853
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
Sbjct 1007 GTGATGAATCTGATAAGGAGGAGAGTAAAGATGAGAAAGTGACACCAAAGAAAAAGGATT 1066
Query 854 CTGATATTGAAATGGTGGATGCAGAGCAGAAATCAAATGCAAAGCAGCCAAAGACACC-A 912
||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||| |
Sbjct 1067 CTGATGTTGAAATGGTGGATGCAGAGCAGAAATCTAATGCAAAGCAGCCGAAGACACCTA 1126
Query 913 TCTACTGAGACTCAGGGAGGATCAAAGACGCTATTTGCTGGAAATCTTTCCTTTCAAATT 972
||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1127 -CTAATCAGACTCAGGGAGGATCAAAGACGCTATTTGCTGGAAATCTTTCCTATCAAATT 1185
Query 973 GAGAGATCTGACATAGAGAATTTCTTCAAAGAAGCTGGTGAAGTTGTTGATGTTAGATTT 1032
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1186 GCGAGATCTGACATAGAGAATTTCTTCAAAGAAGCTGGTGAAGTTGTCGATGTTAGACTT 1245
Query 1033 TCTTCATATGATGATGGGACATTTAAGGGATATGGGCATGTTGAATTTGCTTCTCCAGAA 1092
||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1246 TCTTCATTTGATGATGGGAGTTTTAAGGGATATGGGCATATTGAATTTGCTTCTCCAGAA 1305
Query 1093 GAAGCTCAGAAGGCATTGGAACTGAACGGTAAAATGTTACTAGGGCGCGATGTTCGGCTT 1152
||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||| |||
Sbjct 1306 GAAGCTCAGAAGGCATTGGAAATGAACGGTAAATTGTTACTAGGCCGCGATGTTCGTCTT 1365
Query 1153 GATCTTGCTAACGAGAGGGGT-CA--ACGAAACAGCAATTCTGGTCGCAAAGGAGAAGGA 1209
||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||
Sbjct 1366 GATCTTGCTAACGAGAGGGGTACTCCACGAAACAGCAATCCTGGTCGCAAAGGAGAAGGA 1425
Query 1210 AGCCAAAGTCGAACGATTTTTGTTAGAGGATTCAATTCTTCTCTTGGCGAAGATGAAATC 1269
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1426 AGCCAAAGTCGAACGATTTACGTTAGAGGATTCAGTTCTTCTCTTGGCGAAGATGAAATC 1485
Query 1270 AAGAAAGAGTTGAGAAGTCTTTTTAGTAACTGCGGAGAGGTGACAAGGGTTCATGTTCCA 1329
||||||||||||||||||| |||||| || || |||||||||||||||||||||||||||
Sbjct 1486 AAGAAAGAGTTGAGAAGTCATTTTAGCAAGTGTGGAGAGGTGACAAGGGTTCATGTTCCA 1545
Query 1330 ACAGATCGTGAGACTGGTGCTTGCAGGGGGTTGGCTTACATAGATTTGACGAATGGATTC 1389
|||||||||||||||||||||| |||||| || ||||||||||||||||||| |||||||
Sbjct 1546 ACAGATCGTGAGACTGGTGCTTCCAGGGGCTTTGCTTACATAGATTTGACGAGTGGATTC 1605
Query 1390 GATGAGGCGTTGCAACTGAGCGGAAGTGAAATTGGAGGATGGAACATACATGTGGAAGAG 1449
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1606 GATGAGGCGTTGCAACTGAGCGGAAGTGAAATTGGAGGAGGGAACATACATGTGGAAGAG 1665
Query 1450 TCTAGACCAAGAGATAGTGATGAGGGGCGTTCCTCAAACAGAGCACCTGGTAGAG---CA 1506
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||
Sbjct 1666 TCTAGACCAAGAGATAGTGATGAGGGCCGTTCCTCAAACAGAGCACCTGCTAGAGGAGCA 1725
Query 1507 CCTCGTGGACGTTACTCGGATAGAGGAGCACCTCGTGGC---CGTTTCTCAGATAGAGGA 1563
|||||||| ||| |||| ||||||| |||||||||| |||||||| |||||||
Sbjct 1726 CCTCGTGGCCGTCACTCAGATAGAG---CACCTCGTGGAGGACGTTTCTCGGATAGAG-- 1780
Query 1564 GCACCTCGTGGCCGTTTCTCGGATAGAGGAGCACCTCGTGGCCGTTTCAGTACGCGTGGA 1623
|||| ||||| ||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1781 -CACCACGTGGACGTCACTCAGATAGAGGAGCACCTCGTGGCCGTTTCAGTACGCGTGGA 1839
Query 1624 AGAGGACCCAGCAAACCAAGTGTAATTGAATCAGCTCTA-GGGAAGAAGACGGTCTTTAA 1682
|||||||||||||||||||||||||| |||||| | | | |||| |||||||||||||||
Sbjct 1840 AGAGGACCCAGCAAACCAAGTGTAATGGAATCATC-CAAAGGGACGAAGACGGTCTTTAA 1898
Query 1683 AGATGAAGACTAGAAGAA-GCtttttttttttggttctatcttatagtag-----ctttt 1736
|||||||| |||||||| ||| ||||| |||||||||||||||||| | |||
Sbjct 1899 TGATGAAGAGTAGAAGAAAGCTGTTTTT----GGTTCTATCTTATAGTAGTAGAGCGTTT 1954
Query 1737 ttggcctagtttcttttgttttctATTGAGAAAAGCATTAAGCTTTATACTCTTCTCAAG 1796
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1955 TTGGCCTAGTTTCTTTTGTTTTCTGTTGAGAAAAGCATTAAGCTTTATACTCTTCTTAAG 2014
Query 1797 ATA-TTTTGTGTTGGtttttttCTTAAA-CTTA--A-GAGCACTTTACTTTGCTGCTCAA 1851
|| |||| ||||||||||| |||||| |||| | |||||||||||||||||||||||
Sbjct 2015 ATTCTTTT-TGTTGGTTTTT--CTTAAAACTTATTAAGAGCACTTTACTTTGCTGCTCAA 2071
Query 1852 A-TTTT 1856
| ||||
Sbjct 2072 AATTTT 2077
Score = 501 bits (271), Expect = 1e-140
Identities = 518/626 (83%), Gaps = 61/626 (10%)
Strand=Plus/Plus
Query 1 ATGGGCAAGTCTAGCAAAAAATCCGCCACCAAAGTTGAATCACCTGCTTCAATGACAAAG 60
|||||||||||||| || ||||||| |||| |||||||| ||||||||||||||||||||
Sbjct 1 ATGGGCAAGTCTAGTAAGAAATCCGTCACCGAAGTTGAAACACCTGCTTCAATGACAAAG 60
Query 61 CCACTCAAGAAAGGTAAGAGAGATGCGGAACAGGATTTGGACATCCAAGTTCCGAAGAAG 120
|||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||
Sbjct 61 CCACTCAAGAAAGGTAAGAGAGATGCGGAAGAGGATTTGGACATGCAAGTTACGAAGAAG 120
Query 121 CAGAAGAAAGAGTTGATTGATGCTGTTCAGAAGGAGATATCTGAGAAAACCGTACCGAAG 180
|||||||||||||||||||||| |||||||||||||| | |||||||||| ||||| |||
Sbjct 121 CAGAAGAAAGAGTTGATTGATGTTGTTCAGAAGGAGAAAGCTGAGAAAACGGTACCTAAG 180
Query 181 AAGGTAGAGAGTAGCAGTTCTGACTCATCAGCTTCTTCTGATTCTGAGGATGATCAGAAG 240
|||||||||||||||||||||||| |||||| |||||||| ||| ||| |
Sbjct 181 AAGGTAGAGAGTAGCAGTTCTGAC------GCTTCT---GATTCTGA---TGA--AGAGG 226
Query 241 ACTAAGAAAGTCCTTGCAAAGGAACCTCCTTCTAAGCAGAAGGGTGACTCTTCTTCTGA- 299
| |||| | | || |||| |||| |||||| ||||| ||| |||||||||||
Sbjct 227 AG-AAGA----C-T---AA-GGAAACTCCATCTAAGTTGAAGGATGAGTCTTCTTCTGAA 276
Query 300 --------TGACTCTTCTTCGGATGAGGAACCTGCGCCTGTGAAGAAGCAACCAGAACCT 351
|||||||||||| ||||||||| |||||||| |||||||| ||||||||||
Sbjct 277 GAGGAGGATGACTCTTCTTCAGATGAGGAAATTGCGCCTGCGAAGAAGCGACCAGAACCT 336
Query 352 ATCAAGAAAGAC-AAGGAAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGA 410
|| ||||| | | |||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 337 ATTAAGAAGG-CTAAGGTAGAGAGCAGCTCATCTGATGATGATTCTACTTCAGACGAGGA 395
Query 411 AACTGCCCCTGTGAAGAAGCAACCAGCAGCAGTCCTTGAGAAGCAACCAGAACCTATTAA 470
||||||||||||||||||||||||||||| ||||||||||| | | || |
Sbjct 396 AACTGCCCCTGTGAAGAAGCAACCAGCAG---TCCTTGAGAAG------G--C-TA--A- 440
Query 471 GAAAGACAAGGTAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAATCTGC 530
| | |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 441 G---G------TAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAAACTGT 491
Query 531 CCCTGCGAAGAAGCAACCCGCAGCCCTTAAGAATACCAA-AGCAGATAGCAGTTCATCAG 589
||||| |||||||||||| |||| |||| |||| | || | ||| ||||| ||||| |
Sbjct 492 CCCTGTGAAGAAGCAACCAGCAGTCCTTGAGAAGGCTAAGAT-AGAGAGCAGCTCATCTG 550
Query 590 AGGAGGAATCTTCTTCGGACGAGGAA 615
| || || |||||||| |||||||||
Sbjct 551 ATGATGATTCTTCTTCAGACGAGGAA 576
Score = 257 bits (139), Expect = 2e-67
Identities = 294/362 (81%), Gaps = 37/362 (10%)
Strand=Plus/Plus
Query 297 TGATGACTCTTCTTCGGATGAGGAACCTGCGCCTGTGAAGAAGCAACCAG-A-ACCTATC 354
|||||| ||| |||| || |||||| |||| ||||||||||||||||||| | ||| |
Sbjct 372 TGATGATTCTACTTCAGACGAGGAAACTGCCCCTGTGAAGAAGCAACCAGCAGTCCT-T- 429
Query 355 AAGAAAGAC-AAGGAAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAAAC 413
|| ||| | |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 GAG-AAGGCTAAGGTAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAAAC 488
Query 414 TGCCCCTGTGAAGAAGCAACCAGCAGCAGTCCTTGAGAAGCAACCAGAACCTATTAAGAA 473
|| ||||||||||||||||||||||| ||||||||||| | | || | ||
Sbjct 489 TGTCCCTGTGAAGAAGCAACCAGCAG---TCCTTGAGAAG------G--C-TA--A-GA- 532
Query 474 AGACAAGGTAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAATCTGCCCC 533
|||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 533 --------TAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAAACTGTCCC 584
Query 534 TGCGAAGAAGCAACCCGCAGCCCTTAAGAATACCAAAGCAGATAGCAGTTCATCAGAGGA 593
| |||||||||| | |||| |||| |||| | || ||||| ||||||||||| || ||
Sbjct 585 TATGAAGAAGCAAACAGCAGTCCTTGAGAAGGCTAAGGCAGAGAGCAGTTCATCCGACGA 644
Query 594 -GGAATCTTCTTCGGACGAGGAACTCACACCTGCCATTAA-G--CCAA-CAGTTGTTAAG 648
||| ||||||||||||||||||| ||| ||||| | || | |||| | |||||||||
Sbjct 645 TGGA-TCTTCTTCGGACGAGGAACCCACCCCTGCAAAGAAAGAACCAATC-GTTGTTAAG 702
Query 649 AA 650
||
Sbjct 703 AA 704
Score = 187 bits (101), Expect = 3e-46
Identities = 146/168 (87%), Gaps = 2/168 (1%)
Strand=Plus/Plus
Query 449 AGAAGCAACCAGAACCTATTAAGAAAGAC-AAGGTAGAGAGCAGCTCATCTGATGATGAT 507
|||||| |||||||||||||||| ||| | ||||||||||||||||||||||||||||||
Sbjct 320 AGAAGCGACCAGAACCTATTAAG-AAGGCTAAGGTAGAGAGCAGCTCATCTGATGATGAT 378
Query 508 TCTTCTTCAGACGAGGAATCTGCCCCTGCGAAGAAGCAACCCGCAGCCCTTAAGAATACC 567
||| |||||||||||||| ||||||||| |||||||||||| |||| |||| |||| |
Sbjct 379 TCTACTTCAGACGAGGAAACTGCCCCTGTGAAGAAGCAACCAGCAGTCCTTGAGAAGGCT 438
Query 568 AAAGCAGATAGCAGTTCATCAGAGGAGGAATCTTCTTCGGACGAGGAA 615
|| | ||| ||||| ||||| || || || |||||||| |||||||||
Sbjct 439 AAGGTAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAA 486
Score = 165 bits (89), Expect = 1e-39
Identities = 140/162 (86%), Gaps = 13/162 (8%)
Strand=Plus/Plus
Query 297 TGATGACTCTTCTTCGGATGAGGAACCTG-CGCCTGTGAAGAAGCAACCAG-A-ACCTAT 353
|||||| |||||||| || |||||| ||| | ||||||||||||||||||| | ||| |
Sbjct 462 TGATGATTCTTCTTCAGACGAGGAAACTGTC-CCTGTGAAGAAGCAACCAGCAGTCCT-T 519
Query 354 CAAGAAAGAC-AAGGA-AGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAA 411
|| ||| | || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 -GAG-AAGGCTAA-GATAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAA 576
Query 412 ACTGCCCCTGTGAAGAAGCAACCAGCAGCAGTCCTTGAGAAG 453
|||| |||| ||||||||||| | |||||||||||||||||
Sbjct 577 ACTGTCCCTATGAAGAAGCAA--A-CAGCAGTCCTTGAGAAG 615
Score = 91.6 bits (49), Expect = 2e-17
Identities = 74/85 (87%), Gaps = 6/85 (7%)
Strand=Plus/Plus
Query 1500 TAGAGCACCTCGT---GGACGTTACTCGGATAGAGGAGCACCTCGTGGCCGTTTCTCAGA 1556
||||||||||||| ||||||| ||||||| | ||||||| ||||| ||| ||||||
Sbjct 1746 TAGAGCACCTCGTGGAGGACGTTTCTCGGAT--A-GAGCACCACGTGGACGTCACTCAGA 1802
Query 1557 TAGAGGAGCACCTCGTGGCCGTTTC 1581
|||||||||||||||||||||||||
Sbjct 1803 TAGAGGAGCACCTCGTGGCCGTTTC 1827
> AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like
1 | chr1:18098095-18101623 FORWARD LENGTH=1966
Length=1966
Score = 198 bits (107), Expect = 1e-49
Identities = 240/302 (79%), Gaps = 18/302 (6%)
Strand=Plus/Plus
Query 814 GAGAGTAAAGAAGAGAAAGTGACCCCAAAGAAAAAGGA-CTCTGATATTGAAATGGTGGA 872
|||||| |||| ||| | | ||||| |||||||| || ||||||| | |||||||| ||
Sbjct 860 GAGAGTGAAGACGAGGAGGAAACCCCTAAGAAAAA-GAGCTCTGATGTAGAAATGGTTGA 918
Query 873 TGCAGAGCAGAAATCAAATGC-AAAGCAGCCAAAGACACCATCTACT-GAGACT-CAGGG 929
||| | ||||||||| ||| ||| ||||||||||||||||| ||| | || | ||
Sbjct 919 TGC--TG-AGAAATCAAGTGCTAAA-CAGCCAAAGACACCATCCACTCCTG-CTGC-TGG 972
Query 930 AGGATCAAAGACGCTATTTGCTGGAAATCTTTCCTTTCAA-ATTGAGAGATCTGACATAG 988
|||||||||||| || ||||||| ||||| | |||| || ||||| ||| | || | |
Sbjct 973 AGGATCAAAGACACTCTTTGCTGCCAATCTCT-CTTTTAACATTGAAAGAGCAGATGTTG 1031
Query 989 AGAATTTCTTCAAAGAAGCTGGTGAAGTTGTTGATGTTAGATTTTCTTC-AT-AT-GATG 1045
||||||||||||||||||||||||||||||||||||||||||| ||| | | | || |
Sbjct 1032 AGAATTTCTTCAAAGAAGCTGGTGAAGTTGTTGATGTTAGATTCTCTACCAACAGAGACG 1091
Query 1046 ATGGGACATTTAAGGG-ATATGGGCATGTTGAATTTGCTTCTCCAGAAGAAGCTCAGAAG 1104
|||| | ||| |||| || ||| |||||||| || || ||| | |||||||| ||||||
Sbjct 1092 ATGGTTC-TTTCAGGGGATTTGGCCATGTTGAGTTCGCATCTTCTGAAGAAGCACAGAAG 1150
Query 1105 GC 1106
||
Sbjct 1151 GC 1152
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91866997350
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5