BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479367
Length=1822
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18620.1 | Symbols: | DHHC-type zinc finger family protein ... 2771 0.0
> AT3G18620.1 | Symbols: | DHHC-type zinc finger family protein
| chr3:6408318-6411064 FORWARD LENGTH=1917
Length=1917
Score = 2771 bits (1500), Expect = 0.0
Identities = 1740/1851 (94%), Gaps = 36/1851 (2%)
Strand=Plus/Plus
Query 1 GATCAAAATTTGCCGGTGTTTACTGTTGCAATCGCCGTCG----T---CAACGGT-GGGT 52
|||||||||||||||||||||||||||||||| ||||||| | ||||||| ||||
Sbjct 1 GATCAAAATTTGCCGGTGTTTACTGTTGCAATAGCCGTCGCCACTCGCCAACGGTGGGGT 60
Query 53 TTCGGTAGATTGATTTATAGAATTAGAGGGATAAAAGAGAGGA-GATCTGA-TGCATATC 110
||||||||||||||| || ||||||||||| ||| |||||| | ||| | | || ||
Sbjct 61 ATCGGTAGATTGATTTCTAAAATTAGAGGGA-GAAATAGAGGAGGCTCTCATTTTATTTC 119
Query 111 TGTGAATATTAAAGACGGTCAACGC-AAATTACTTGTGAAGAATCGGATGC-TT-TGT-G 166
|||||| ||||||||||||||||| |||| |||||||||||||| ||||| || ||| |
Sbjct 120 -GTGAATGTTAAAGACGGTCAACGCAAAATCACTTGTGAAGAATCTGATGCTTTGTGTCG 178
Query 167 TCGTGGTCAAGCTATTTCGGATTAATCCGACAACAATCTGTCAGATCTTTGTGTAAAGAT 226
|||||||||||| ||||| |||| |||||| ||||||||||||||||||||||||||||
Sbjct 179 TCGTGGTCAAGCAATTTCAGATTGATCCGAAAACAATCTGTCAGATCTTTGTGTAAAGAG 238
Query 227 AGTAGCTTTGAGGGAGCTGATAGTTCTGTTCGGTGCCCAAGATTAGAGATTTCGTATATT 286
|||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||
Sbjct 239 AGTAGCTTTGAGGGAGCTGATAGTTCTGTTCGTTGCCCATGATTAGAGATTTAGTATATT 298
Query 287 CTCACGGATGATTCAGCGAGACGTGTTTCATCGATTAGCAGATG-ATTGATGGGGTTTCT 345
|||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||
Sbjct 299 CTCACGGATGATTCAGCGAGACCTGTTTCATCGATTAGCAGATGAATGGATGGGGTTTCT 358
Query 346 TCTGCAATTGATACGTATTCTATTGGTTTAGGATATTCAAAGCTAGAGGAAAACAAGTTT 405
|||| |||||| ||||| || |||| ||||||||||||||||||||||||||||||||||
Sbjct 359 TCTGAAATTGACACGTAGTCCATTGTTTTAGGATATTCAAAGCTAGAGGAAAACAAGTTT 418
Query 406 TTGGTTGATTCGTTTGATTTCATTTCAATAAAGAAGAGCTTTTGGGTTTTCTTTGAGTTG 465
||||||||||| |||||||||||| ||| ||| |||||||||| ||||||||||||||||
Sbjct 419 TTGGTTGATTCTTTTGATTTCATTACAAAAAAAAAGAGCTTTTTGGTTTTCTTTGAGTTG 478
Query 466 GTGATTGTTAACTTTCATC-AATCTTCTG--G-GA--TTTCTGAAGAAACCTTGTTTATG 519
||||||||||||| ||||| ||||||||| | | ||||| | |||| | ||||
Sbjct 479 GTGATTGTTAACTCTCATCAAATCTTCTGAAGAAACCTTTCT--TGTAACC-AG-CTATG 534
Query 520 GAAGAGTCTTCCCAGGGGAGTTTTGTTACAACCATAAATGAGGATTATGAAGCAATTTGT 579
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 535 GAAGATTCTTCCCAGGGGAGTTTTGTTGCAACCATAAATGAGGATTATGAAGCAATTTGT 594
Query 580 TGGGGCTGTGGGCTAAACCTTGTTCTTCCATCATATGCACCTGTTTTCAAGTGTGGATGG 639
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 595 TGGGGCTGTGGGCTAAACCTTGTTCTTCCATCATATGCACCTGTTTTTAAGTGTGGATGG 654
Query 640 TGTGGTGCAATCACGAATCAGAATCCAGTCAGACCTGAAACCAAAAGCTTTGGGTTGAGA 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TGTGGTGCAATCACGAATCAGAATCCAGTCAGACCTGAAACCAAAAGCTTTGGGTTGAGA 714
Query 700 CGTTTCCGTGACCGGTGTTTTGTCGTTATTCTTGCAGTTTTTATGCTCTTTGTGATATGT 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 CGTTTCCGTGACCGGTGTTTTGTCGTTATTCTTGCAGTTTTTATGCTCTTTGTGATATGT 774
Query 760 GGTGGGATTTGGGCTGCGTATCCCGTCTTGTTCTCGATCAGCTTGGCTTGTGGAATTTTC 819
||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 775 GGTGGGATTTGGGCTGCATATCCCGTCTTGTTTTCGATCAGCTTGGCTTGCGGAATTTTC 834
Query 820 CATTCTGTTACAACAGCGTGTCTGGCGATATCAACGCTCTCAACATTTATTCTTGTTGCT 879
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 835 CATTCTGTTACAACAGCGACTCTGGCGATATCAACGCTCTCAACATTTATTCTCGTTGCT 894
Query 880 TTTAAATGCGCCGGGAAGCCAACAAATATTCTTTATGGAACCCACCCTGGAGTAGGGAAT 939
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 TTTAAATGTGCCGGGAAGCCAACAAATATTCTTTATGGAACCCACCCTGGAGTAGGGAAT 954
Query 940 GGCGCACTTAACAACTATACCTTTTGTAACTACTGCTCCAAACCCAAGTCTCCTAGAACC 999
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 955 GGTGCACTTAACAACTATACCTTTTGTAACTACTGCTCCAAACCCAAGTCACCTAGAACC 1014
Query 1000 CATCACTGCCGCACGTGTGGCATGTGTGTATTGGACATGGATCACCATTGCCCCTTTATT 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 CATCACTGCCGCACGTGTGGCATGTGTGTATTGGACATGGATCACCATTGCCCCTTTATT 1074
Query 1060 GGGAACTGTGTTGGTGCGGGTAATCACAAACATTTCATAGCATTCCTTATCTCAGCAGTC 1119
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||
Sbjct 1075 GGGAACTGTGTTGGTGCGGGTAATCACAAATACTTCATAGCATTCCTTATCTCAGCCGTC 1134
Query 1120 ACTAGCACAATCTATGCTGCTGTTATGTGTGTGTATTCCTTGATTCATATCTTGCCACCT 1179
| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1135 ATTAGCACAAGCTATGCTGCTGTTATGTGTGTGTATACCTTGATTCATATCTTGCCACCT 1194
Query 1180 ATGGAAAATGGAGCTGCATATGCATCCGATGTGGCCCATGTGGCGCATGGTAATAGTTTA 1239
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1195 ATTGAAAAAGGAGCTGCATATGCATCCGATGTGGCCCATGTGGCGCATGGTAATAGTATA 1254
Query 1240 TCGATTCTGAGAGTGGTGAAGAATATATTTCTTACTTACATAGCCAACGCTGTCTTCATC 1299
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1255 TCGATTCTGAGAGTGGTGAAGAATATATGTCTTACTTACATAGCCAACGCTGTCTTCATC 1314
Query 1300 TCTGTTCGAAGCCTTGTTCTAGTCTATCTCTTTGTGGCGAGTGTTTCTGTGGCGATTGGG 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 TCTGTTCGAAGCCTTGTTCTAGTCTATCTCTTTGTGGCGAGTGTTTCTGTGGCGATTGGG 1374
Query 1360 CTAAGTGTTTTGCTGTGGCAACAGCTTAGCTATATCTATGAAGGCAAGACGTACTTAAGC 1419
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1375 CTAAGTGTTTTGCTGTGGCAACAGCTTAGCTATATCTATGAAGGCAAGACTTACTTGAGC 1434
Query 1420 CATTTAAGTTCTCAAGGAACAGAAGAAGATGGTGAAAAGAGCTGCAGGAATCTTTTGACT 1479
||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 1435 CATTTGAGTTCTCAAGGAACAGAAGAAGATGGTGAAAAAAGCTGCCGGAATCTTTTGACT 1494
Query 1480 TTTTTCGGGTGTCCACATTCAATTGAAAGGCACTTGCCAACCATAAGGAACTTGAGGAAG 1539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 TTTTTCGGGTGTCCACATTCAATTGAAAGGCACTTGCCAACCATAAGGAACTTGAGGAAG 1554
Query 1540 AGACATAAGACATGAGAAGAAGAAGAATAGAA---TGTGAGCCAAATATGtttttttCTG 1596
||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||
Sbjct 1555 AGACATAAGACATGAGAAGAAGAAGAAGAGAAGAATGTGAGCCAAGTATGTTTTTTTCTG 1614
Query 1597 TTTCCTCCTACGTTTGGGAGCTTGTTGTGGTCAATTCAGAAACATTCATCATAC--T--T 1652
||||||||||| |||| |||||||||||||||||||||||||||||||||||| | |
Sbjct 1615 TTTCCTCCTACACTTGG-AGCTTGTTGTGGTCAATTCAGAAACATTCATCATACAGTACT 1673
Query 1653 -GGAGCTAACAGGTAATGCAGATTAGCAAAGTTTGTACCTCATTTGTGAAAATTCATGAT 1711
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 TGGAGCTAACAGGTAATGCAGATTAGCAAAGTTTGTACCTCATTTGTGAAAATTCATGAT 1733
Query 1712 CATAGAATATAGGAGCAACTGCTCCTGTAAATTTTGTTTCAAGATTGTAAATTTGTTGTT 1771
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1734 CATAGAATATAGGAGCAACTGCTCCTGTAAATTTTGCTTAAAGATTGTAAATTTGTTGTT 1793
Query 1772 TCCCTGACATGCCTTTGAACTCAAGAATAACATTATCAAAGGGGTTCCATA 1822
||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 1794 TCCCTGACATGCCTTTGAACTCAAGGATAACATTATCAAAGGCGTTCCATA 1844
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90160178820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5