BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479368
Length=1280
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18630.1 | Symbols: ATUNG, UNG | uracil dna glycosylase | ch... 1888 0.0
AT2G10550.1 | Symbols: | Most likely an inactive paralog of th... 381 9e-105
> AT3G18630.1 | Symbols: ATUNG, UNG | uracil dna glycosylase |
chr3:6410958-6413068 REVERSE LENGTH=1426
Length=1426
Score = 1888 bits (1022), Expect = 0.0
Identities = 1177/1252 (94%), Gaps = 9/1252 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCGT---CATCTAAAACCCTAATGGAtttttttCAACCTGCCAAACGCCTCAAA 57
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 ATGGCTTCGTCGACACCTAAAACCCTAATGGATTTTTTTCAACCTGCCAAACGCCTCAAA 126
Query 58 GCTTCCCCTTCTTCCTCCTCTTTCCCCGCCGTCTCCGTCGCCGGAGGATCCCGTGGTTTG 117
|||||||||||||||||||||||||| ||||||||||||||||| || ||||||| ||||
Sbjct 127 GCTTCCCCTTCTTCCTCCTCTTTCCCTGCCGTCTCCGTCGCCGGTGGTTCCCGTGATTTG 186
Query 118 GTTTCTGCAGCAAACTCGCCGCCTCGTGTAACCGTAACCACTTCCGTCGCCGATGACTCA 177
| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 187 GGTTCTGTAGCAAACTCGCCGCCTCGTGTAACCGTTACCACTTCCGTCGCCGATGATTCG 246
Query 178 TCTGGCCTTACACCTGAACAGATCGCTCGCGCAGAGTTCAACAAGTTCGTCGCCAAATCC 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 247 TCTGGCCTTACACCTGAACAGATCGCTCGCGCAGAGTTCAACAAGTTCGTCGCCAAGTCC 306
Query 238 AAGCGTAACCTCGCCGTCTGCTCCGAGAAGGTCACAAAAGCGAAAGCTGAAGGAGGCTGC 297
|||||||||||||||||||||||||||| |||||||||||| ||| |||||||| ||||
Sbjct 307 AAGCGTAACCTCGCCGTCTGCTCCGAGAGGGTCACAAAAGCAAAATCTGAAGGAAACTGC 366
Query 298 TACGTGCCATTGAGTGAGCTCTTAGTGGAAGAATCGTGGCTTAAAGCTCTTCCTGGGGAA 357
||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 367 TACGTACCATTGAGTGAGCTCTTAGTAGAAGAATCATGGCTTAAAGCTCTTCCTGGGGAA 426
Query 358 TTGCATAAACCTTACGCCAAAACCCTTTCTGATTTCCTTGAACGTGAGATCATCGCTGAC 417
|| |||||||| ||||||||| | |||||||||||||||||||||||||||||| |||||
Sbjct 427 TTTCATAAACCCTACGCCAAATCACTTTCTGATTTCCTTGAACGTGAGATCATCACTGAC 486
Query 418 AGTAAAAGCCCTCCGATTTATCCACCGCAACACTTGATTTTCAATGCCCTTAATACAACT 477
||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 487 AGTAAAAGCCCTCTGATTTATCCACCGCAGCACTTGATTTTCAATGCTCTTAATACAACT 546
Query 478 CCTTTTGATCGAGTTAAGACTGTCATTATCGGACAGGATCCTTATCATGGACCTGGTCAA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 CCTTTTGATCGAGTTAAGACTGTCATTATCGGACAGGATCCTTATCATGGACCTGGTCAA 606
Query 538 GCTATGGGTTTGTCCTTCTCTGTGCCTGAAGGAGAAAAGCTTCCTTCTAGTCTATTGAAC 597
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 607 GCTATGGGTTTGTCCTTCTCTGTACCTGAAGGAGAAAAGCTTCCTTCTAGTCTGTTGAAC 666
Query 598 ATATTTAAGGAGCTTCACAAAGATGTTGGCTGTTCTATCCCACGTCACGGTAATCTACAG 657
|| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 667 ATCTTTAAGGAGCTTCATAAAGATGTTGGCTGTTCCATCCCACGTCACGGTAATCTACAG 726
Query 658 AAATGGGCTGTGCAGGGTGTCTTGCTGCTGAATGCTGTTCTTACAGTAAGGAGTAAACAG 717
|||||||||||||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 727 AAATGGGCTGTGCAGGGTGTGTTACTCCTGAATGCTGTTCTTACAGTAAGGAGTAAACAG 786
Query 718 CCTAATTCACATGCAAAGAAAGGATGGGAACAATTCACTGATGCTGTTATCCAAAGCATC 777
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 787 CCTAATTCACATGCAAAGAAAGGATGGGAACAATTCACTGATGCTGTTATTCAAAGTATC 846
Query 778 TCACAGCAGAAGGAAGGTGTTGTTTTTCTCCTCTGGGGAAGATACGCTCAAGAAAAATCC 837
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 847 TCACAGCAGAAGGAAGGTGTTGTTTTTCTTCTCTGGGGAAGATACGCTCAAGAGAAATCC 906
Query 838 AAGTTGATAGATGCGACTAAACATCATATACTCACAGCAGCTCATCCATCTGGTTTGTCG 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 AAGTTGATAGATGCGACTAAACATCATATACTCACAGCAGCTCATCCATCTGGTTTGTCG 966
Query 898 GCGAATAGAGGCTTCTTTAACTGCAGGCATTTCTCTCGCGCAAACCAGCTTCTCGAGCAA 957
||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||
Sbjct 967 GCGAATAGAGGCTTCTTCGACTGCAGGCATTTCTCTCGCGCAAACCAGCTACTCGAGGAA 1026
Query 958 ATGGGGATTCCTCCCATAGACTGGCAACTTTAACTTGTTAACCGTAGTCTCAAGGCCAAG 1017
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1027 ATGGGGATTCCTCCCATAGACTGGCAACTTTAACTTGTTAACCGTAGTCTTAAGGCCAAG 1086
Query 1018 AAGAAGTGTGATTTTTCTCCT-AAGCCTAGCGTTTTTTGCAGTCCTTTTTGGTGAAGAAA 1076
||||||||||| |||| |||||| | ||||||||||||||||||||||||||| |
Sbjct 1087 GCGAAGTGTGATTCATCTCGGGAAGCCTTGTGTTTTTTGCAGTCCTTTTTGGTGAAGAGA 1146
Query 1077 GTTTGAAGTTCTTAACAGTTGTAATG-CCCtttttttGTGAACTGTGTTATCACGGAAAC 1135
||||||||||||||| |||| ||||| ||||||||| ||||| | ||||||||||||| |
Sbjct 1147 GTTTGAAGTTCTTAATAGTTCTAATGTCCCTTTTTT-GTGAAATATGTTATCACGGAACC 1205
Query 1136 CTAGCATAGGCTGTTGAAGTAGTTGGATCTGAGTATGGCTCAGTAGTGGCAAACTGTGTC 1195
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1206 CTAGCATAAGCTGTTGAAGTAGTTGGATCTGAGTATGGCTCAGTAGTGGCAAACTGTCT- 1264
Query 1196 TTCATTTTGTAGTTTTCAAGAACAGTGGTGTATTAAATTT-GTATGGAAAGT 1246
|| || |||||||||| |||| ||||||||||| |||| |||||||||||
Sbjct 1265 TT-ATGTTGTAGTTTTGAAGAGTGGTGGTGTATTATATTTTGTATGGAAAGT 1315
> AT2G10550.1 | Symbols: | Most likely an inactive paralog of
the uracil DNA glycosylase AtUNG (At3g18630) generated by a
gene duplication event and subsequently disrupted by transposon
insertions (PubMed ID: 20056608). | chr2:4096001-4096920
REVERSE LENGTH=513
Length=513
Score = 381 bits (206), Expect = 9e-105
Identities = 256/280 (91%), Gaps = 3/280 (1%)
Strand=Plus/Plus
Query 7 TCGTCATCTAAAACCCTAATGGAtttttttCAACCTGCCAAACGCCTCAAAGCTT-CCC- 64
||| || ||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 10 TCGACACCTAAAACCCTAATGGATTTTTTTCAACCTGCCAAACGTCTCAAAGCTTCCCCT 69
Query 65 -CTTCTTCCTCCTCTTTCCCCGCCGTCTCCGTCGCCGGAGGATCCCGTGGTTTGGTTTCT 123
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||
Sbjct 70 TCTTCTTCCTCCTCTTTCCCCGCCGTCTCCGTCGCCGGACGATCCCGTGATTTGGGTTCT 129
Query 124 GCAGCAAACTCGCCGCCTCGTGTAACCGTAACCACTTCCGTCGCCGATGACTCATCTGGC 183
| ||||||||||||||||||||||||||| |||||| | ||||||||||| || ||||||
Sbjct 130 GTAGCAAACTCGCCGCCTCGTGTAACCGTTACCACTGCGGTCGCCGATGATTCGTCTGGC 189
Query 184 CTTACACCTGAACAGATCGCTCGCGCAGAGTTCAACAAGTTCGTCGCCAAATCCAAGCGT 243
||||||||||||||| |||||||||| |||||| ||||||| |||||||| |||||| ||
Sbjct 190 CTTACACCTGAACAGGTCGCTCGCGCCGAGTTCCACAAGTTTGTCGCCAAGTCCAAGAGT 249
Query 244 AACCTCGCCGTCTGCTCCGAGAAGGTCACAAAAGCGAAAG 283
||||||||||| ||||||| ||||||||||||||| ||||
Sbjct 250 AACCTCGCCGTTTGCTCCGTGAAGGTCACAAAAGCAAAAG 289
Score = 169 bits (91), Expect = 8e-41
Identities = 106/113 (94%), Gaps = 2/113 (2%)
Strand=Plus/Plus
Query 514 GATCCTTATCATGGACCTGGTCAAGCTATGGGTTTGTCCTTCTCTGTGCCTGAAGGAGAA 573
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 294 GATCCTTATCATGGACCTGGTCAAGCTATGGGTTTATCCTTCTATGTGCCTGAAGGAGAA 353
Query 574 AAGCTTCCTTCTAGTCTATTGAACATATTTAAGGAGCTTCACAAAGATGTTGG 626
||| | ||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 354 AAG-T-CCTTCTAGTCTGTTGAACATATTCAAGGAGCTTCATAAAGATGTTGG 404
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62951483430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5