BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479371
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18650.1 | Symbols: AGL103 | AGAMOUS-like 103 | chr3:6417344... 1496 0.0
> AT3G18650.1 | Symbols: AGL103 | AGAMOUS-like 103 | chr3:6417344-6418504
REVERSE LENGTH=1161
Length=1161
Score = 1496 bits (810), Expect = 0.0
Identities = 1001/1091 (92%), Gaps = 22/1091 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTCTTCTTCGTCCTCTTCTCTTTCGTCTTCATCATCGAAGAAGaaaaaaaaCC-T 59
||||||||||||||||||||||||||||||| |||| ||||||||||| || |||||| |
Sbjct 1 ATGGCTTCTTCTTCGTCCTCTTCTCTTTCGTTTTCAACATCGAAGAAG-AACAAAACCTT 59
Query 60 TTTCAAGAAACCTAATTCTGCTTCTTCTTCTTCGAGAGCCACAAGCTTAATTAAAAGACA 119
||||||||||||||||||||||| |||||||||||| |||||||| || || ||||||||
Sbjct 60 TTTCAAGAAACCTAATTCTGCTTTTTCTTCTTCGAGGGCCACAAGTTTGATCAAAAGACA 119
Query 120 AGC-GACTGTCTTTAAGAAAGCTGAAGAGCTTTCAATTCTCTGTGACATCGATGTCTGCG 178
| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 120 A-CAGACTGTCTTTAAGAAAGCTAAAGAGCTTTCAATTCTCTGTGACATCGATGTCTGCG 178
Query 179 TCATCTGTTACATG-TCAGACGGAAAGCTCAAGACATGGCCTGACGACAGAGAGAAGGTC 237
||||||||||| | ||| ||||| |||| |||||||||||||| || ||||||||||||
Sbjct 179 TCATCTGTTAC-GGATCAAACGGAGAGCTTAAGACATGGCCTGAAGAGAGAGAGAAGGTC 237
Query 238 AAAGCCATAGCTCGAAGGTACGGTGAATTAAGCGAGACGAAGCGTCGCAAAGGAAGCGTT 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AAAGCCATAGCTCGAAGGTACGGTGAATTAAGCGAGACGAAGCGTCGCAAAGGAAGCGTT 297
Query 298 GATCTTCACGAGTTCCTCGAGAGGATCAATAAGGATGATTCCAAGGAGGAGGAGGAGAAG 357
|||||||||||||||||||||| ||| || ||||||||| || || | |||||||||||
Sbjct 298 GATCTTCACGAGTTCCTCGAGAAGATGAACAAGGATGATCCCGAG-A--AGGAGGAGAAG 354
Query 358 AAGAAGAAGATTAAAGTGAGACGTGTATCCAGAGTCAAGTATCCAGTTTGGGACCCTAGG 417
||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 355 AAGAAGA---TTAAAGTGAGACGTGTACCCAAAGTCAAGTATCCAGTTTGGGACCCTAGG 411
Query 418 TTTGATAATTACTCTGTGGAGCAACTCACTGGG-CTTGTTCAGTCCTTGGAGCGAAACCT 476
||||| |||||||||||||||||||||| |||| || |||||||||||||| ||||||||
Sbjct 412 TTTGACAATTACTCTGTGGAGCAACTCA-TGGGACTGGTTCAGTCCTTGGAACGAAACCT 470
Query 477 AACCAGAATCCAACATAGGACTCACGCTGTTGGTGAAGCTCAGGGACAGAGGAGGATGCA 536
|||||| ||||||||||||||| |||||||| |||||||||||| ||||||||| | ||
Sbjct 471 AACCAGGATCCAACATAGGACTTGCGCTGTTGTTGAAGCTCAGGGGCAGAGGAGGGTACA 530
Query 537 GTACACGAACATGGCTAGTCAAGAACTGATGATGGCTCATACGATGAACCAACTTCAACA 596
||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||
Sbjct 531 GTACACGAACATGGCTAATCAAGAACTGATGATGGCTAATACGATGAATCAACTTCAACA 590
Query 597 ACATTCAAACCAGGTTTCCATGTATCTGTGGAACCATG-ATAACGGTTCTTTCTCGCAAA 655
||| |||||||||||||||||||||||||||||||||| | |||||| ||||||| ||||
Sbjct 591 ACACTCAAACCAGGTTTCCATGTATCTGTGGAACCATGGA-AACGGTGCTTTCTCACAAA 649
Query 656 TACCAGTCTCTGCATTAGCTTCAAACCAAGCGCAATCTCTGGCTCCGATTCCGTCTGAAC 715
| |||||||| ||||| |||||||||||| |||||||||| |||||||||||| ||||||
Sbjct 650 TCCCAGTCTCAGCATTGGCTTCAAACCAAACGCAATCTCTAGCTCCGATTCCGCCTGAAC 709
Query 716 TAATGATTTACCCAAATTCGGATGTGGGAAGTTACTCGGGGTCACTTGGGGTACAAGGAA 775
| ||||||||||| |||||||||| ||||| |||||||||||| || |||||||||||||
Sbjct 710 TGATGATTTACCCGAATTCGGATGCGGGAAATTACTCGGGGTCTCTCGGGGTACAAGGAA 769
Query 776 CTGGGATCAACGGGCTTCAGACCATGAACATGTTAACCTACAACAACATCAACAGCGTTA 835
|||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 770 CTGGGATCAATGGGCTTCAGAACATGAACATGTTAACCTATAACAACATCAACAGCGTTA 829
Query 836 ATGATTTCGCAAAACAGATTGACCAAAATTCCAGAGTGGAAAGTTACTCTAGCTTACTTG 895
|||||||| |||||||| ||||||| |||||||||| |||||||||||||||||||||||
Sbjct 830 ATGATTTCTCAAAACAGTTTGACCAGAATTCCAGAGCGGAAAGTTACTCTAGCTTACTTG 889
Query 896 GGGTACACGAATACGGAAACAATGAGTTTGAGAACACTAACATGTCCAGCCGCAACAACT 955
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 890 GGGTACACGAAGACGGAAACAATGAGTTTGAGAACCCTAACATGTCCAGCCGCAACAACT 949
Query 956 TCAATGTTCAAGACTATGCAGGGTTACTTGGGGTGGAAGGAACTGTAACTGGAACTAACG 1015
||||||||||||||| |||||||||||||||| || ||||| | ||||||||||||
Sbjct 950 TCAATGTTCAAGACTGTGCAGGGTTACTTGGGATGCAAGGA---G---CTGGAACTAACG 1003
Query 1016 GGTTGCAGAGCATGAACATGCACGACTacaacaacaacaacaacaGTAACGCTAATGGTC 1075
|||||||||||||||||||||| ||||||| |||||||||| || |||| |||||||||
Sbjct 1004 GGTTGCAGAGCATGAACATGCATGACTACAGTAACAACAACAGCATTAACTCTAATGGTC 1063
Query 1076 TTTCGCATCAG 1086
|||||||||||
Sbjct 1064 TTTCGCATCAG 1074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53363179335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5