BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479372 Length=2119 Score E Sequences producing significant alignments: (Bits) Value AT3G18660.2 | Symbols: PGSIP1, GUX1 | plant glycogenin-like sta... 3144 0.0 > AT3G18660.2 | Symbols: PGSIP1, GUX1 | plant glycogenin-like starch initiation protein 1 | chr3:6419031-6421982 REVERSE LENGTH=2183 Length=2183 Score = 3144 bits (1702), Expect = 0.0 Identities = 1963/2090 (94%), Gaps = 13/2090 (1%) Strand=Plus/Plus Query 1 CTGTCTCAATCCATCAGTTTTATATGGCAAACTCTCCCGCTGCTCCTGCAGCCACCGCTA 60 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| | | Sbjct 1 CTGTCCCAATCCATCAGTTTTATATGGCAAACTCTCCCGCTGCTCCTGCACCCACCACCA 60 Query 61 CTACCGGCGGTGACTCCCGGCGACGCCTCTCCGCGTCCATAGAAGCAATATGCAAGAGGA 120 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CAACCGGTGGTGACTCCCGGCGACGCCTCTCCGCGTCCATAGAAGCAATATGCAAGAGGA 120 Query 121 GATTCCGAAGAAATAGCAAAGGCA-GTGGTAGATCGGATATGCTGAAACCGTTTAGTATC 179 ||||||| |||||||||||||| | |||| |||||||||||| |||||||||||| |||| Sbjct 121 GATTCCGGAGAAATAGCAAAGG-AGGTGGCAGATCGGATATGGTGAAACCGTTTAATATC 179 Query 180 ATAAATTTTCCAACACAAGACAAAAACACTAGTTGTTGTTGTTGCAGCAAGTTTCAGATC 239 ||||||||| | |||||||||||||||| |||||||||||||| || ||||||||||||| Sbjct 180 ATAAATTTTTCGACACAAGACAAAAACAGTAGTTGTTGTTGTTTCACCAAGTTTCAGATC 239 Query 240 GTGAAGCTTCTCTTGTTTATCCTTCTCTCTGCTACTCTATTCACCATTATTTATTCTCCT 299 |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||| Sbjct 240 GTGAAGCTTCTCTTGTTTATCCTTCTCTCTGCCACTCTCTTCACCATTATCTATTCTCCT 299 Query 300 GAAGCTTATCATCATTCTCTTTCACACTCTTCTTCTCGATGGATATGGAGAAGACAAGAT 359 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 300 GAAGCTTATCATCATTCTCTTTCCCACTCATCTTCTCGATGGATATGGAGAAGACAAGAT 359 Query 360 CCTCGTTACGTCTCGGATCTGGACATAAACTGGGACGATGTGACCAAAACCCTTGAGAGC 419 || |||||| ||||||||||||| |||||||||||||||||||| ||||||||||||| | Sbjct 360 CCACGTTACTTCTCGGATCTGGATATAAACTGGGACGATGTGACTAAAACCCTTGAGAAC 419 Query 420 ATCGAAGAAGGCCGTACGATCGGTGTCTTGAATTTCGATTCGAACGAGATTCAGCGATGG 479 ||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||| Sbjct 420 ATCGAAGAAGGCCGTACGATCGGTGTCTTGAATTTTGATTCGAACGAGATCCAACGATGG 479 Query 480 AGAGAAGTTTCCAAGAGCAACGACAATAAGGATGAAGAAAACGTTGTCGTATTGAATCTA 539 |||||||| ||||||||||| |||||| |||||||||||| ||||| |||||||||||| Sbjct 480 AGAGAAGTATCCAAGAGCAAGGACAATGGGGATGAAGAAAAAGTTGTTGTATTGAATCTA 539 Query 540 GACTACGCGGACAAGAACGTGACTTGGGACGCACTCTATCCAGAGTGGATCGATGAGGAG 599 || ||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 540 GATTACGCAGACAAGAATGTGACTTGGGACGCACTATATCCAGAGTGGATCGATGAGGAG 599 Query 600 CAAGAAACAGAGGTCCCTGTTTGTCCTAATCTCCCGAAGATTAAGGTACCTACAAGAAGA 659 |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct 600 CAAGAAACAGAGGTCCCTGTTTGTCCTAATATCCCGAACATTAAGGTACCTACAAGAAGA 659 Query 660 CTTGATCTTATCGTCGTGAAGCTTCCTTGTCGGAAAGAAGGAAATTGGTCGAGAGACGTC 719 || ||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 660 CTCGATCTGATCGTCGTGAAACTTCCTTGTCGGAAAGAAGGGAATTGGTCGAGAGACGTC 719 Query 720 GGGAGATTGCATCTACAGCTGGCGGCTGCAACGGTGGCGGCTTCGGCCAAAGGGCTTTTC 779 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||| Sbjct 720 GGGAGATTGCATCTACAGCTAGCGGCTGCAACTGTGGCGGCTTCGGCCAAAGGGTTTTTC 779 Query 780 AGGGGACATGTGTTGTTTGTCTCTAGATGCTTTCCGATTCCGAATCTTTTCCGGTGTAAA 839 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 780 AGGGGACATGTGTTTTTTGTATCTAGATGCTTTCCGATTCCGAATCTTTTCCGGTGTAAA 839 Query 840 GATCTAGTGTCTCGGAGAGGCGATGTTTGGTTGTATAAACCTAATCTTGATACCTTGAGA 899 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 840 GATCTTGTGTCTCGGAGAGGCGATGTTTGGTTGTACAAACCTAATCTTGATACCTTGAGA 899 Query 900 GATAAGCTTCAGCTTCCTGTAGGTTCTTGTGAGCTCTCTCTTCCCCTCGGCATCAAAGAG 959 || ||||||||||| |||||||| ||||||||||| |||||||| || |||||| |||| Sbjct 900 GACAAGCTTCAGCTGCCTGTAGGGTCTTGTGAGCTATCTCTTCCTCTTGGCATCCAAGAT 959 Query 960 AGACCAAGCTTAGGAAACCCTAAACGAGAAGCTTACGCAACGATTCTTCACTCCGCTCAC 1019 || ||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||| Sbjct 960 AGGCCAAGCTTAGGAAACCCTAAAAGAGAAGCTTACGCAACAATTCTTCACTCAGCTCAC 1019 Query 1020 GTTTACGTCTGTGGTGCAATCGCGGCGGCTCAGAGCATAAGACAGTCCGGGTCAACGAGA 1079 ||||||||||| ||||||||||| ||||||||||||||||||||||| || || |||||| Sbjct 1020 GTTTACGTCTGCGGTGCAATCGCCGCGGCTCAGAGCATAAGACAGTCTGGTTCGACGAGA 1079 Query 1080 GACCTCGTGATCCTTGTCGATGATAACATAAGCGGTTACCACCGGAGTGGACTAGAAGCC 1139 ||||| || |||||||| ||||| ||||| |||||||||||||||||||||||||||||| Sbjct 1080 GACCTTGTTATCCTTGTTGATGACAACATCAGCGGTTACCACCGGAGTGGACTAGAAGCC 1139 Query 1140 GCAGGTTGGCAAATCCGGACGATACAGAGGATTCGAAACCCTAAAGCAGAGAAAGATGCT 1199 || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1140 GCGGGTTGGCAAATCCGGACGATACAGAGGATTCGAAACCCTAAGGCAGAGAAAGATGCT 1199 Query 1200 TACAACGAGTGGAACTACAGCAAGTTCCGGCTGTGGCAGCTGACTGATTACGACAAAATC 1259 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1200 TACAACGAATGGAACTACAGCAAGTTCCGGCTATGGCAGCTGACTGATTACGACAAAATC 1259 Query 1260 ATCTTCATCGACGCGGATCTCTTAATCTTGAGAAACATCGATTTCCTGTTCTCGATGCCT 1319 || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1260 ATTTTCATCGACGCGGATCTCTTAATCTTGAGAAACATCGATTTCTTGTTCTCGATGCCT 1319 Query 1320 GAAATCTCAGCTACAGGAAACAACGGAACTCTCTTTAATTCAGGAGTTATGGTGATCGAG 1379 || |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 1320 GAGATCTCAGCTACAGGAAACAATGGAACTCTGTTTAATTCAGGAGTTATGGTGATCGAG 1379 Query 1380 CCTTGCAACTGTACGTTTCAGCTTTTGATGGAACATATAAACGAGATTGAGTCTTACAAC 1439 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 1380 CCTTGCAACTGTACGTTTCAGCTTCTGATGGAACATATAAACGAGATTGAGTCTTATAAC 1439 Query 1440 GGAGGAGATCAAGGTTACTTAAATGAGGTATTCACATGGTGGCACAGGATTCCGAAACAT 1499 || |||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||| Sbjct 1440 GGTGGAGATCAAGGTTACTTAAACGAGGTATTCACATGGTGGCACCGGATTCCAAAACAT 1499 Query 1500 ATGAATTTCTTGAAGCATTTTTGGGTTGGCGATGAAGATGACG-TAAGACGCAAGAAAAC 1558 |||||||||||||||||||||||| |||||||||||||||||| || |||||||||||| Sbjct 1500 ATGAATTTCTTGAAGCATTTTTGGATTGGCGATGAAGATGACGCGAA-ACGCAAGAAAAC 1558 Query 1559 AGAGCTTTTTGGAGCAGAGCCTCCTGTTCTTTATGTTCTTCATTACC-TGGGAATGAAGC 1617 ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| Sbjct 1559 AGAGCTTTTTGGAGCAGAGCCTCCTGTTCTTTATGTTCTTCATTACCTTGGG-ATGAAGC 1617 Query 1618 CGTGGTTATGCTACCGTGACTACGACTGTAACTTCAACTCCGACATATTTGTTGAGTTTG 1677 |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1618 CGTGGTTATGTTACCGTGACTACGACTGTAACTTCAACTCCGACATATTCGTTGAGTTTG 1677 Query 1678 CTACAGATATCGCTCACCGAAAATGGTGGATGGTCCACGACGCCATGCCAGAGGAACTTC 1737 |||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1678 CTACCGATATCGCTCATCGAAAATGGTGGATGGTCCACGACGCCATGCCACAGGAACTTC 1737 Query 1738 ACCAGTTTTGTTACTTGCGATCCAAGCAAAAGGCACAGCTGGAATATGATCGCCGGCAAG 1797 |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1738 ACCAATTCTGTTACTTGCGATCCAAGCAAAAGGCACAGCTGGAATATGATCGCCGGCAAG 1797 Query 1798 CAGAGGCCGCAAATTATGCCGATGGTCACTGGAAAATAAGAGTAAAGGACCCGAGATTCA 1857 |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 1798 CAGAGGCCGCAAATTATGCCGACGGTCATTGGAAAATAAGAGTAAAGGACCCGAGATTCA 1857 Query 1858 AGATTTGCATCGATAAATTGTGTAATTGGAAAAGTATGTTGCGGCATTGGGGAGAATCAA 1917 | ||||||||||| ||||| |||||||||||||||||| ||||||||||||| ||||||| Sbjct 1858 AAATTTGCATCGACAAATTATGTAATTGGAAAAGTATGCTGCGGCATTGGGGCGAATCAA 1917 Query 1918 ATTGGACCGACTACGAGTCTTTTGTTCCCACCCCACCGGCCATTACCGCCG-CTCGGAGA 1976 ||||||| ||||||||||||||||||||||||||||| |||||||||| | | |||||| Sbjct 1918 ATTGGACTGACTACGAGTCTTTTGTTCCCACCCCACCAGCCATTACCGTAGAC-CGGAGA 1976 Query 1977 TCGTCACTTCCCGGCCATAACTTGTGACGCAATATTTATACATACTTTATATCAATGGAT 2036 || ||||||||||||||||||||||||||||||| |||||||||||| || | ||||||| Sbjct 1977 TCATCACTTCCCGGCCATAACTTGTGACGCAATAATTATACATACTT-AT-T-AATGGAT 2033 Query 2037 TTCATGAGAttttttttATTTGAATTGTTTCTGCGAGATTAGGTAAATAT 2086 |||||||| |||||| ||||||||||| |||||||||||||| ||||| Sbjct 2034 TTCATGAG-TTTTTTGG-TTTGAATTGTTGCTGCGAGATTAGGTGAATAT 2081 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 105069740685 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5