BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479372
Length=2119
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18660.2 | Symbols: PGSIP1, GUX1 | plant glycogenin-like sta... 3144 0.0
> AT3G18660.2 | Symbols: PGSIP1, GUX1 | plant glycogenin-like starch
initiation protein 1 | chr3:6419031-6421982 REVERSE LENGTH=2183
Length=2183
Score = 3144 bits (1702), Expect = 0.0
Identities = 1963/2090 (94%), Gaps = 13/2090 (1%)
Strand=Plus/Plus
Query 1 CTGTCTCAATCCATCAGTTTTATATGGCAAACTCTCCCGCTGCTCCTGCAGCCACCGCTA 60
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| | |
Sbjct 1 CTGTCCCAATCCATCAGTTTTATATGGCAAACTCTCCCGCTGCTCCTGCACCCACCACCA 60
Query 61 CTACCGGCGGTGACTCCCGGCGACGCCTCTCCGCGTCCATAGAAGCAATATGCAAGAGGA 120
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAACCGGTGGTGACTCCCGGCGACGCCTCTCCGCGTCCATAGAAGCAATATGCAAGAGGA 120
Query 121 GATTCCGAAGAAATAGCAAAGGCA-GTGGTAGATCGGATATGCTGAAACCGTTTAGTATC 179
||||||| |||||||||||||| | |||| |||||||||||| |||||||||||| ||||
Sbjct 121 GATTCCGGAGAAATAGCAAAGG-AGGTGGCAGATCGGATATGGTGAAACCGTTTAATATC 179
Query 180 ATAAATTTTCCAACACAAGACAAAAACACTAGTTGTTGTTGTTGCAGCAAGTTTCAGATC 239
||||||||| | |||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct 180 ATAAATTTTTCGACACAAGACAAAAACAGTAGTTGTTGTTGTTTCACCAAGTTTCAGATC 239
Query 240 GTGAAGCTTCTCTTGTTTATCCTTCTCTCTGCTACTCTATTCACCATTATTTATTCTCCT 299
|||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 240 GTGAAGCTTCTCTTGTTTATCCTTCTCTCTGCCACTCTCTTCACCATTATCTATTCTCCT 299
Query 300 GAAGCTTATCATCATTCTCTTTCACACTCTTCTTCTCGATGGATATGGAGAAGACAAGAT 359
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 300 GAAGCTTATCATCATTCTCTTTCCCACTCATCTTCTCGATGGATATGGAGAAGACAAGAT 359
Query 360 CCTCGTTACGTCTCGGATCTGGACATAAACTGGGACGATGTGACCAAAACCCTTGAGAGC 419
|| |||||| ||||||||||||| |||||||||||||||||||| ||||||||||||| |
Sbjct 360 CCACGTTACTTCTCGGATCTGGATATAAACTGGGACGATGTGACTAAAACCCTTGAGAAC 419
Query 420 ATCGAAGAAGGCCGTACGATCGGTGTCTTGAATTTCGATTCGAACGAGATTCAGCGATGG 479
||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 420 ATCGAAGAAGGCCGTACGATCGGTGTCTTGAATTTTGATTCGAACGAGATCCAACGATGG 479
Query 480 AGAGAAGTTTCCAAGAGCAACGACAATAAGGATGAAGAAAACGTTGTCGTATTGAATCTA 539
|||||||| ||||||||||| |||||| |||||||||||| ||||| ||||||||||||
Sbjct 480 AGAGAAGTATCCAAGAGCAAGGACAATGGGGATGAAGAAAAAGTTGTTGTATTGAATCTA 539
Query 540 GACTACGCGGACAAGAACGTGACTTGGGACGCACTCTATCCAGAGTGGATCGATGAGGAG 599
|| ||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 540 GATTACGCAGACAAGAATGTGACTTGGGACGCACTATATCCAGAGTGGATCGATGAGGAG 599
Query 600 CAAGAAACAGAGGTCCCTGTTTGTCCTAATCTCCCGAAGATTAAGGTACCTACAAGAAGA 659
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 600 CAAGAAACAGAGGTCCCTGTTTGTCCTAATATCCCGAACATTAAGGTACCTACAAGAAGA 659
Query 660 CTTGATCTTATCGTCGTGAAGCTTCCTTGTCGGAAAGAAGGAAATTGGTCGAGAGACGTC 719
|| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 660 CTCGATCTGATCGTCGTGAAACTTCCTTGTCGGAAAGAAGGGAATTGGTCGAGAGACGTC 719
Query 720 GGGAGATTGCATCTACAGCTGGCGGCTGCAACGGTGGCGGCTTCGGCCAAAGGGCTTTTC 779
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||
Sbjct 720 GGGAGATTGCATCTACAGCTAGCGGCTGCAACTGTGGCGGCTTCGGCCAAAGGGTTTTTC 779
Query 780 AGGGGACATGTGTTGTTTGTCTCTAGATGCTTTCCGATTCCGAATCTTTTCCGGTGTAAA 839
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 780 AGGGGACATGTGTTTTTTGTATCTAGATGCTTTCCGATTCCGAATCTTTTCCGGTGTAAA 839
Query 840 GATCTAGTGTCTCGGAGAGGCGATGTTTGGTTGTATAAACCTAATCTTGATACCTTGAGA 899
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 840 GATCTTGTGTCTCGGAGAGGCGATGTTTGGTTGTACAAACCTAATCTTGATACCTTGAGA 899
Query 900 GATAAGCTTCAGCTTCCTGTAGGTTCTTGTGAGCTCTCTCTTCCCCTCGGCATCAAAGAG 959
|| ||||||||||| |||||||| ||||||||||| |||||||| || |||||| ||||
Sbjct 900 GACAAGCTTCAGCTGCCTGTAGGGTCTTGTGAGCTATCTCTTCCTCTTGGCATCCAAGAT 959
Query 960 AGACCAAGCTTAGGAAACCCTAAACGAGAAGCTTACGCAACGATTCTTCACTCCGCTCAC 1019
|| ||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||
Sbjct 960 AGGCCAAGCTTAGGAAACCCTAAAAGAGAAGCTTACGCAACAATTCTTCACTCAGCTCAC 1019
Query 1020 GTTTACGTCTGTGGTGCAATCGCGGCGGCTCAGAGCATAAGACAGTCCGGGTCAACGAGA 1079
||||||||||| ||||||||||| ||||||||||||||||||||||| || || ||||||
Sbjct 1020 GTTTACGTCTGCGGTGCAATCGCCGCGGCTCAGAGCATAAGACAGTCTGGTTCGACGAGA 1079
Query 1080 GACCTCGTGATCCTTGTCGATGATAACATAAGCGGTTACCACCGGAGTGGACTAGAAGCC 1139
||||| || |||||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1080 GACCTTGTTATCCTTGTTGATGACAACATCAGCGGTTACCACCGGAGTGGACTAGAAGCC 1139
Query 1140 GCAGGTTGGCAAATCCGGACGATACAGAGGATTCGAAACCCTAAAGCAGAGAAAGATGCT 1199
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1140 GCGGGTTGGCAAATCCGGACGATACAGAGGATTCGAAACCCTAAGGCAGAGAAAGATGCT 1199
Query 1200 TACAACGAGTGGAACTACAGCAAGTTCCGGCTGTGGCAGCTGACTGATTACGACAAAATC 1259
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1200 TACAACGAATGGAACTACAGCAAGTTCCGGCTATGGCAGCTGACTGATTACGACAAAATC 1259
Query 1260 ATCTTCATCGACGCGGATCTCTTAATCTTGAGAAACATCGATTTCCTGTTCTCGATGCCT 1319
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1260 ATTTTCATCGACGCGGATCTCTTAATCTTGAGAAACATCGATTTCTTGTTCTCGATGCCT 1319
Query 1320 GAAATCTCAGCTACAGGAAACAACGGAACTCTCTTTAATTCAGGAGTTATGGTGATCGAG 1379
|| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1320 GAGATCTCAGCTACAGGAAACAATGGAACTCTGTTTAATTCAGGAGTTATGGTGATCGAG 1379
Query 1380 CCTTGCAACTGTACGTTTCAGCTTTTGATGGAACATATAAACGAGATTGAGTCTTACAAC 1439
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1380 CCTTGCAACTGTACGTTTCAGCTTCTGATGGAACATATAAACGAGATTGAGTCTTATAAC 1439
Query 1440 GGAGGAGATCAAGGTTACTTAAATGAGGTATTCACATGGTGGCACAGGATTCCGAAACAT 1499
|| |||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||
Sbjct 1440 GGTGGAGATCAAGGTTACTTAAACGAGGTATTCACATGGTGGCACCGGATTCCAAAACAT 1499
Query 1500 ATGAATTTCTTGAAGCATTTTTGGGTTGGCGATGAAGATGACG-TAAGACGCAAGAAAAC 1558
|||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||
Sbjct 1500 ATGAATTTCTTGAAGCATTTTTGGATTGGCGATGAAGATGACGCGAA-ACGCAAGAAAAC 1558
Query 1559 AGAGCTTTTTGGAGCAGAGCCTCCTGTTCTTTATGTTCTTCATTACC-TGGGAATGAAGC 1617
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1559 AGAGCTTTTTGGAGCAGAGCCTCCTGTTCTTTATGTTCTTCATTACCTTGGG-ATGAAGC 1617
Query 1618 CGTGGTTATGCTACCGTGACTACGACTGTAACTTCAACTCCGACATATTTGTTGAGTTTG 1677
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1618 CGTGGTTATGTTACCGTGACTACGACTGTAACTTCAACTCCGACATATTCGTTGAGTTTG 1677
Query 1678 CTACAGATATCGCTCACCGAAAATGGTGGATGGTCCACGACGCCATGCCAGAGGAACTTC 1737
|||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1678 CTACCGATATCGCTCATCGAAAATGGTGGATGGTCCACGACGCCATGCCACAGGAACTTC 1737
Query 1738 ACCAGTTTTGTTACTTGCGATCCAAGCAAAAGGCACAGCTGGAATATGATCGCCGGCAAG 1797
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1738 ACCAATTCTGTTACTTGCGATCCAAGCAAAAGGCACAGCTGGAATATGATCGCCGGCAAG 1797
Query 1798 CAGAGGCCGCAAATTATGCCGATGGTCACTGGAAAATAAGAGTAAAGGACCCGAGATTCA 1857
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1798 CAGAGGCCGCAAATTATGCCGACGGTCATTGGAAAATAAGAGTAAAGGACCCGAGATTCA 1857
Query 1858 AGATTTGCATCGATAAATTGTGTAATTGGAAAAGTATGTTGCGGCATTGGGGAGAATCAA 1917
| ||||||||||| ||||| |||||||||||||||||| ||||||||||||| |||||||
Sbjct 1858 AAATTTGCATCGACAAATTATGTAATTGGAAAAGTATGCTGCGGCATTGGGGCGAATCAA 1917
Query 1918 ATTGGACCGACTACGAGTCTTTTGTTCCCACCCCACCGGCCATTACCGCCG-CTCGGAGA 1976
||||||| ||||||||||||||||||||||||||||| |||||||||| | | ||||||
Sbjct 1918 ATTGGACTGACTACGAGTCTTTTGTTCCCACCCCACCAGCCATTACCGTAGAC-CGGAGA 1976
Query 1977 TCGTCACTTCCCGGCCATAACTTGTGACGCAATATTTATACATACTTTATATCAATGGAT 2036
|| ||||||||||||||||||||||||||||||| |||||||||||| || | |||||||
Sbjct 1977 TCATCACTTCCCGGCCATAACTTGTGACGCAATAATTATACATACTT-AT-T-AATGGAT 2033
Query 2037 TTCATGAGAttttttttATTTGAATTGTTTCTGCGAGATTAGGTAAATAT 2086
|||||||| |||||| ||||||||||| |||||||||||||| |||||
Sbjct 2034 TTCATGAG-TTTTTTGG-TTTGAATTGTTGCTGCGAGATTAGGTGAATAT 2081
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105069740685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5