BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479377
Length=1355
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18710.1 | Symbols: PUB29, ATPUB29 | plant U-box 29 | chr3:6... 1624 0.0
> AT3G18710.1 | Symbols: PUB29, ATPUB29 | plant U-box 29 | chr3:6434083-6435561
REVERSE LENGTH=1479
Length=1479
Score = 1624 bits (879), Expect = 0.0
Identities = 1233/1393 (89%), Gaps = 68/1393 (5%)
Strand=Plus/Plus
Query 1 ATGGGGAGAGATGAAACTGAGACGTACATTACAGTGCCTAGTTTCTTTAAATGTCCTATA 60
||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| |||
Sbjct 81 ATGGGGAGAGATGAAACAGAGACGTACATTACAGTGCCAAGTTTCTTCAAATGTCCGATA 140
Query 61 TCTCTAGACGTAATGAGATCTCCGGTTAGTCTCTGTACCGGCGTGACTTATGATCGAGCC 120
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 TCTCTTGACGTGATGAGATCTCCGGTTAGTCTCTGTACCGGCGTGACTTATGATCGAGCC 200
Query 121 AGTATTCAGAGATGGCTCGATGGTGGTAACAACACTTGTCCCGCTACTATGCAACTTCTC 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 AGTATCCAGAGATGGCTCGATGGTGGTAACAACACTTGTCCCGCTACTATGCAACTTCTC 260
Query 181 AAAACTAAGGATTTTGTTCCTAACCTCACGCTTCAACGCCTTATCAAAATCTGGTCTGAT 240
|||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 261 AAAACTAAAGATTTTGTTCCTAACCTCACTCTTCAACGTCTTATCAATATCTGGTCTGAT 320
Query 241 TCCCTCGGCCGT--T-ACAAC----A-CCGCTGGTTCT-CCGCCACCGTCTGGTAGAGAA 291
|| |||||||| | ||||| | | | |||||| || |||||||||||||||
Sbjct 321 TCAATCGGCCGTCGTCACAACGGTGATTCTCCGGTTCTGAATCCGCCGTCTGGTAGAGAA 380
Query 292 GTTCCGACGGTTGAAGAAGTGAATGTGTTGCTGAAGAGATTGCTGAGTCTGGAGAAAAAC 351
||||||||| |||||||||||||||||| || |||||||| ||||||||||| |
Sbjct 381 GTTCCGACGAAGGAAGAAGTGAATGTGTTGTTGGAGAGATTGATGAGTCTGGAG----A- 435
Query 352 GATGAGATTCGGATTGAGATTTTGTCCAGGATCGTTCGATTCGTGAAGGATTCGGATTCG 411
|| || || | || | |||||||||||||||||||||||||||||||
Sbjct 436 -AT----TT--GA-T--GA--------A-GATCGTTCGATTCGTGAAGGATTCGGATTCG 476
Query 412 AACAGAGAGTTTCTCTCGGCCAAGAAGGAGTTCGTACCAATGCTCGTCGATATTATACGC 471
|||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||
Sbjct 477 AACAGAGAGTTTCTCTCGAAGAAGATGGAGTTCGTACCAATGCTCGTTGATATTATACGC 536
Query 472 ACGAAGACGAAGAAGATCGAGTTAGCTCTAATGGCGATTAGGATTTTGGATACGGTTAAA 531
||||||| || |||||||||||||| | ||||||||||||||||||||||| || |||||
Sbjct 537 ACGAAGAAGACGAAGATCGAGTTAGTTATAATGGCGATTAGGATTTTGGATTCGATTAAA 596
Query 532 GGAGATCGTGAACGGTTATCGAATCTGATGTTGGCGAATGACGACGGAGATTGTTTAACG 591
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 597 GTAGATCGTGAACGGTTATCGAATCTGATGTTGGCGAATGACGGCGGAGATTGTTTAACG 656
Query 592 GCGATTCTCTTAGCGATTCAACGCGGGAATCTGGAATCGAAGATTGAATCCGTTAGGGTT 651
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct 657 GCGATTCTCTTAGCGATTCAACGCGGGAATCTGGAATCGAAGATCGAATCGGTTCGGGTT 716
Query 652 TTGGATTGGATCTCATTCGACGTTAAATCGAAGCTCT-TAATCGCAGAACGTGACGG-GA 709
|||||||||||||| ||||||| |||||| ||||| | | || |||||||||||||| |
Sbjct 717 TTGGATTGGATCTCCTTCGACGCTAAATCAAAGCT-TATGATAGCAGAACGTGACGGAG- 774
Query 710 TTTTAACAGAGATGATCAAATCAATCAGTATCACTGAGTC---AGATCCGAGTTTGATCG 766
|||||||||||||||| ||||| || |||||||||||||| |||||||||||||||||
Sbjct 775 TTTTAACAGAGATGATGAAATCGATAAGTATCACTGAGTCGTCAGATCCGAGTTTGATCG 834
Query 767 AAGCGACTTTATCGTTTCTAATCACAATCGCCAAATCCAAACGAGTGAGATCGAAACTAA 826
|||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 835 AAGCGAGTTTATCGTTTCTAATCACAATCTCCAAATCAAAACGAGTGAGATCGAAACTAA 894
Query 827 TCGTTGCGAAAA-CAATCGCGAAGATCAAAGACATTCTTCTCACGGAGACGTTAACAAAC 885
||| ||| |||| ||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 895 TCGCTGC-AAAAGCAATCACGAAGATCAAAGACATTCTTCTGACGGAGACGTTAACAAAC 953
Query 886 GTCGCCGTCACGGAGAAGTC-TCTGAAGCTGTTAGAGACTCTGTCGTCGAAGCGAGAAGG 944
|| ||||| ||||||||||| | ||||||||||||||||| | ||||| |||||||||||
Sbjct 954 GTTGCCGTGACGGAGAAGTCGT-TGAAGCTGTTAGAGACTTTATCGTCAAAGCGAGAAGG 1012
Query 945 AAGATTGGAGATTTGCGGAGAAGATAATGGAAGATGTGTGGAAGGAGTGGTGAAGAAGCT 1004
|||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 1013 GAGATTGGAGATTTGTGGAGACGACAATGGTAGATGTGTGGAAGGAGTGGTGAAGAAGCT 1072
Query 1005 GTTGAAAGTATCTACAACAGCGACGGAATACGCCGTGACGATTCTGTGGTGTTTGTGTTA 1064
||||||||||| || || ||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1073 CTTGAAAGTATCGACGACGGCGACGGAACACGCCGTGACGATTTTGTGGTGTTTGTGTTA 1132
Query 1065 TGTTTTCCGGGAAGATAAGACGGCGGAGGAGACGGTGGAGAGAAGTAATGGAGTGACGAA 1124
||||||| ||||||||||||||| ||| |||||||||||||||||||| ||||| |||||
Sbjct 1133 TGTTTTCAGGGAAGATAAGACGGTGGAAGAGACGGTGGAGAGAAGTAACGGAGTTACGAA 1192
Query 1125 ACTGTTAGTGGTGATACAGAGCAACTGCTCGGCGATGGTGAGACAAATGGCGAAAGATCT 1184
||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| |
Sbjct 1193 GCTGTTAGTGGTGATACAGAGCAATTGTTCGGCGATGGTTAGACAAATGGCGAAAGATTT 1252
Query 1185 GATTAAAGTGTTGAAGATTAATTCATCTGCTTTGTCTGCTTACGAGACCAAGACCACTCA 1244
|||||||||||||||| ||||||| ||||||||| ||||||||||||||||||| |||||
Sbjct 1253 GATTAAAGTGTTGAAGTTTAATTCCTCTGCTTTGGCTGCTTACGAGACCAAGACTACTCA 1312
Query 1245 TATTATGCCTTTTTGATTATTTA-T-GATACA--A-G--TAA-T-TG-T-TA--T----C 1287
|||||||||||||||||| |||| | | |||| | | ||| | || | || | |
Sbjct 1313 TATTATGCCTTTTTGATTTTTTAGTAG-TACATTATGAATAAATATGATATAAGTAAATC 1371
Query 1288 --AT---CAAACTATTTTGAACTTAGTACATGTTGTAAATCATAAGAGAAATTTTGTCAA 1342
|| ||||||||||||||| || || |||||||||||| || ||||||||||||||
Sbjct 1372 TTATTATCAAACTATTTTGAACGTA-TAGATGTTGTAAATCTTATGAGAAATTTTGTCAG 1430
Query 1343 TTTTACTAATATT 1355
|||||||||||||
Sbjct 1431 TTTTACTAATATT 1443
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66716524305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5