BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479380
Length=442
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18740.1 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd... 675 0.0
AT1G36240.1 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd... 455 2e-127
> AT3G18740.1 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein | chr3:6453368-6454018 FORWARD LENGTH=556
Length=556
Score = 675 bits (365), Expect = 0.0
Identities = 418/442 (95%), Gaps = 10/442 (2%)
Strand=Plus/Plus
Query 1 AAAATGGTTGCGGCGAAGAAGACGAAGAAGTCCCATGAGGGAATCAACAGCAGATTAGCT 60
||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 67 AAAATGGTTGCGGAGAAGAAGGCGAAGAAGTCCCATGAAGGAATCAACAGCAGATTAGCT 126
Query 61 CTTGTGATGAAGAGTGGAAAGTACACTCTTGGATACAAATCTGTTCTCAAATCCCTTCGC 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 127 CTTGTGATGAAGAGTGGAAAGTACACTCTTGGATACAAGTCTGTTCTCAAATCCCTTCGC 186
Query 121 AGCTCCAAAGGTAAGCTGATATTGATATCTAGCAATTGCCCACCATTGAGGAGATCAGAG 180
|||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 187 AGCTCCAAAGGTAAGCTGATATTGATATCTAGCAATTGCCCACCGTTGAGAAGGTCAGAG 246
Query 181 ATTGAATACTATGCCATGCTTGCTAAAGTTGGAGTTCATCACTACAATGGCAACAATGTT 240
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 247 ATTGAATACTATGCGATGCTTGCTAAAGTTGGAGTTCATCGCTACAATGGCAACAATGTT 306
Query 241 GATTTGGGTACTGCTTGTGGTAAATACTTCCGAGTCTCTTGCCTCAGCATCGTTGATCCT 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 307 GATTTGGGTACTGCTTGTGGTAAATACTTCCGAGTTTCTTGCCTCAGCATCGTTGATCCT 366
Query 301 GGTGATTCCGACATCATCAAGGCACTTCCTGGAGATCAGTGATTCTGATTTGTTATCATG 360
||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
Sbjct 367 GGTGATTCCGACATCATCAAGACACTTCCTGGAGATCAGTGATTCTGATTT-T------G 419
Query 361 ATGATTTTGCCATGTTGTTCTCTATGCTGCTTTGTTATGCATTGTGTTCTTCAAAGACTT 420
|||||||||||||||||||||||||||| | |||||| |||||||||||||||||||
Sbjct 420 ATGATTTTGCCATGTTGTTCTCTATGCT--TGA-TTATGCTTTGTGTTCTTCAAAGACTT 476
Query 421 AATGTTAGATTTCTTTGGTTTC 442
||||||||||||||||||||||
Sbjct 477 AATGTTAGATTTCTTTGGTTTC 498
> AT1G36240.1 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein | chr1:13614890-13616233 FORWARD LENGTH=339
Length=339
Score = 455 bits (246), Expect = 2e-127
Identities = 311/342 (91%), Gaps = 6/342 (2%)
Strand=Plus/Plus
Query 4 ATGGTTGCGGCGAAGAAGACGAAGAAGTCCCATGAGGGAATCAACAGCAGATTAGCTCTT 63
|||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| ||
Sbjct 1 ATGGTTGCAGCGAAGAAGACGAAGAAGTCCCATGAAGGAATCAACAGCAGATTGGCT-TT 59
Query 64 -GTGATGAAGAGTGG-AAAGTACACTCTTGGATACAAATCTGTTCTCAAATCCCTTCGCA 121
|||||||||||||| ||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct 60 GGTGATGAAGAGTGGCAAA-TACACTCTTGGTTACAAATCTGTTCTCAAATCTCTTCGCA 118
Query 122 GCTCCAAAGGTAAGCTGATATTGATATCTAGCAATTGCCCACCATTGAGGAGATCAGAGA 181
| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 119 GTTCCAAAGGTAAGTTGATATTGATATCTAGCAATTGCCCACCATTGAGGAGATCTGAGA 178
Query 182 TTGAATACTATGCCATGCTTGCTAAAGTTGGAGTTCATCACTACAATGGCAACAATGTTG 241
|||| |||||||| ||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 179 TTGAGTACTATGCTATGCTTGCTAAAGTTGGAGTTCATCACTACAATAGAAACAATGTTG 238
Query 242 AT-TTGGGTACTGCTTGTGGTAAATACTTCCGAGTCTCTTGCCTCAGCATCGTTGATCCT 300
|| |||| |||||| || |||||||||||||| || || ||||||||||| ||||| ||
Sbjct 239 ATCTTGG-TACTGCCTGCGGTAAATACTTCCGTGTGTCATGCCTCAGCATAGTTGACCCA 297
Query 301 GGTGATTCCGACATCATCAAGGCACTTCCTGGAGATCAGTGA 342
||||| || |||||||||||| | ||||||||||| ||||||
Sbjct 298 GGTGACTCTGACATCATCAAGTCGCTTCCTGGAGACCAGTGA 339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21011919082
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5