BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479387
Length=1137
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18777.1 | Symbols: | pseudogene, similar to RING-H2 zinc f... 1426 0.0
AT3G50301.1 | Symbols: | Pseudogene of AT1G49230; zinc finger ... 806 0.0
AT1G49230.1 | Symbols: | RING/U-box superfamily protein | chr1... 418 6e-116
> AT3G18777.1 | Symbols: | pseudogene, similar to RING-H2 zinc
finger protein, similar to putative RING zinc finger protein
GB:AAF16660 from (Arabidopsis thaliana); blastp match of 47%
identity and 3.3e-31 P-value to GP|17016985|gb|AAL33552.1|AF436851_1|AF436851
RING-H2 zinc finger protein {Cucumis melo}
| chr3:6470219-6471389 FORWARD LENGTH=1171
Length=1171
Score = 1426 bits (772), Expect = 0.0
Identities = 897/957 (94%), Gaps = 10/957 (1%)
Strand=Plus/Plus
Query 1 TTTCCCATTAAATGTAAGAAAGTATATGCAAACCTTTACCTTTCCTCTATATATAGAACC 60
|||| || |||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 5 TTTCTCACTAAATGTAAGAAAGTATATGGAAACCTTTACCTTTCCACTATATATAGAACC 64
Query 61 TGCAACAAAAAC-CTAGAAGATCTATCTATCAAACTCTTCAAACTAGGTTATCATGTCGA 119
||||||| |||| | |||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 65 TGCAACAGAAACAC-AGAAGATCTATCAATCTAACTCTTCAAACTAGGTTATCATGTCGA 123
Query 120 CCGCAACTTCTGCTCCCATTACCAAACCAACTGAGCTCTTCCAAGATATTCGTGGAGATT 179
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 124 CCGCAACTTCTGCTCCCACTACCAAACCAACTGAGCTCTTCCAAGATATTCGGGGAGATT 183
Query 180 TTTACTCAAGAAGACTACTACTTCATACAGCTTATCAACCACCTACCACGGCATCATCC- 238
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 184 TTTACTCAAGAAGACTGCTACTTCATACAGCTTATCAACCACCTACTGCGGCATCA-CCG 242
Query 239 CCGTTTGCAGACGCTCATGAAACATCACACACCTACGC-AAGTCATATGAGCTTTGATGC 297
||||||||||| ||||||||| |||||||| ||||| | |||||||||||||||||||||
Sbjct 243 CCGTTTGCAGATGCTCATGAAGCATCACACTCCTAC-CAAAGTCATATGAGCTTTGATGC 301
Query 298 AAATGTTGTCATGGTTCTATCAGTCCTCTTATGTGCACTAGTTTGCTCACTTGGACTGCA 357
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 AAATGTTGTCATGGTCCTATCAGTCCTCTTATGTGCACTAGTTTGCTCACTTGGACTGCA 361
Query 358 TTCTATCATAAGATGTGCACTGAGGTACTCCAATTTATTATCATCTGAAGCTAGTGACGA 417
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 362 TTCTATCATAAGATGTGCACTAAGGTACTCCAATTTATTATCATCCGAAGCTAGTGACGA 421
Query 418 GCTCTCAGTCCGCTTGGCCAACACAGGGGTCAAACAAAAAGCCTTGAAGAGTTTCCAGAC 477
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 GTTCTCAGTTCGCTTGGCCAACACAGGGGTCAAACAAAAAGCCTTGAAGAGTTTCCAGAC 481
Query 478 AGTAAGCTACACTGCAGAACTGAAGCTGCCTGGCCTAGATACAGAGTGTGCCATATGTCT 537
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 482 GGTAAGCTACACAGCAGAACTGAAGCTACCTGGCCTAGATACAGAGTGTGCCATATGTCT 541
Query 538 CTCGGAGTTTGTGTCCGGAGAGCGAGTCAAGCTTCTGCCAAAGTGCCACCATGGATTCCA 597
||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 542 CTCGGAGTTTGCATCGGGAGAGCGAGTCAAGCTTCTGCCGAAGTGCCACCATGGATTCCA 601
Query 598 TGTCCGGTGTATAGACAAATGGCTCAGTTCACACTCATCGTGTCCCACGTGCAGGCACTG 657
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 602 TGTCCGGTGTATAGACAAATGGCTCAGTTCACACTCATCTTGTCCCACCTGCAGGCACTG 661
Query 658 CCTCATTCAGACTTGCAAAAAGATAGCTGGCTGCAGTGAGACGGTCTCATCACCTAATCA 717
|||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||
Sbjct 662 CCTCATTCAGACTTGCAAAAAGATAGCTGGGTACAGTGAGACGGAATCATCACCTAATCA 721
Query 718 ACCACAAGAAAACATGCATATAGCACCGCTAGGACCGGAATCATTGATACGCGGTTTTAG 777
||||||| | ||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 722 ACCACAACAGAACGTGCATATATCACCGCTAGGACCGGAATCATTGATACGCGGTTTTAG 781
Query 778 CTAAACACAGTCAACTAGGGTTAGGTGCAGTTATGTTTTGAAAAGCC-GATATATATGTA 836
||||||||||||||||||| |||||||||||||| |||| | || || |||||| |||||
Sbjct 782 CTAAACACAGTCAACTAGGCTTAGGTGCAGTTATCTTTT-ATAA-CCTGATATACATGTA 839
Query 837 CTGCCACACCATTAGAATTAGTCGTGATCCCAAAGTATCTGCAGTTGAATATTCAAAA-C 895
|||||||||| |||||| ||||| |||||||||||||||| |||| ||||||||||| |
Sbjct 840 CTGCCACACCTTTAGAAATAGTCAAGATCCCAAAGTATCTGAAGTTCAATATTCAAAAAC 899
Query 896 AACGTAATCGTTTCCACTGTAAAGTTTTAAACATTAAGACATGTTGtttttttCACT 952
|||||||||||||||||||||||||||||||||||| || |||||||||| ||||||
Sbjct 900 AACGTAATCGTTTCCACTGTAAAGTTTTAAACATTATGAAATGTTGTTTTCTTCACT 956
Score = 244 bits (132), Expect = 1e-63
Identities = 174/192 (91%), Gaps = 11/192 (6%)
Strand=Plus/Plus
Query 949 CACTAAATGACATTCCAATAGAAGATCTTAGA--CTCACGTCAGTGAATGAAATGATAAA 1006
||| ||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 982 CACAAAACGACACTCCAATAGAAGATCTTAGACTCTCACGTCAGTGAATGAAATGATAAA 1041
Query 1007 CAACTCAAAATACAAAGATAAGGAAGCTGAGAAGGCAAAACACTCAAAACCAACCAACTT 1066
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1042 CAACTAAAAATCCAAAGATAAGGAAGCTGAGAAGGCAAAACACTCAAAACCAACCAACTT 1101
Query 1067 GGTCAACTAAGAGAATTCCCAGCTTTAAGAAATTCTCAGGTTATTAAAACATG-CTATGC 1125
||||||||||||||||||| || || | ||| ||||||||||||||||| ||||||
Sbjct 1102 GGTCAACTAAGAGAATTCC----TT-AA-A--TTCCCAGGTTATTAAAACATGGCTATGC 1153
Query 1126 AACTAGTGTCTT 1137
|||||||||||
Sbjct 1154 CACTAGTGTCTT 1165
> AT3G50301.1 | Symbols: | Pseudogene of AT1G49230; zinc finger
(C3HC4-type RING finger) family protein | chr3:18645924-18646505
FORWARD LENGTH=582
Length=582
Score = 806 bits (436), Expect = 0.0
Identities = 539/588 (92%), Gaps = 10/588 (2%)
Strand=Plus/Plus
Query 172 TGGAGATTTTTACTCAAGAAGACTACTACTTCATACAGCTTATCAACCACCTACCACGGC 231
|||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||
Sbjct 3 TGGAGATTTTTACTCAAGAAGACTACTACTTCATGCAACTTATCAACGACCTACCACGGC 62
Query 232 ATCATCC-CCGTTTGCAGACGCTCATGAAACATCACACACCTACGCAAGTCATATGAGCT 290
|||| || || |||||| | ||||||||||||||||| ||||| ||||||||||||| |
Sbjct 63 ATCA-CCGCCATTTGCACATACTCATGAAACATCACACTCCTACACAAGTCATATGAG-T 120
Query 291 TTGATGCAAATGTTGTCATGGTTCTATCAGTCCTCTTATGTGCACTAGTTTGCTCACTTG 350
||||| |||||||||||||||| | || |||||||||||||||||||||| ||| |||||
Sbjct 121 TTGATACAAATGTTGTCATGGTCCAATTAGTCCTCTTATGTGCACTAGTTAGCTAACTTG 180
Query 351 GACTGCATTCTATCATAAGATGTGCACTGAGGTACTCCAATTTATTATCATCTGAAGCTA 410
|||||||||| ||||||||||||||| | |||||||||||||| |||| ||| |||||||
Sbjct 181 GACTGCATTCCATCATAAGATGTGCAATAAGGTACTCCAATTTCTTATTATCAGAAGCTA 240
Query 411 GTGACGAGCTCTCAGTCCGCTTGGCCAACACAGGGGTCAAACAAAAAGCCTTGAAGAGTT 470
|||| | |||||||||||||||||||||| |||| ||||||||||||| ||||||||||
Sbjct 241 GTGA-G--CTCTCAGTCCGCTTGGCCAACAAAGGG-TCAAACAAAAAGCTTTGAAGAGTT 296
Query 471 TCCAGACAGTAAGCTACACTGCAGAACTGAAGCTGCCTGGCCTAGATACAGAGTGTGCCA 530
|||| |||||||||||||||||| |||||||||| | |||||||||||||||||||| ||
Sbjct 297 TCCAAACAGTAAGCTACACTGCATAACTGAAGCTACATGGCCTAGATACAGAGTGTGTCA 356
Query 531 TATGTCTCTCGGAGTTTGTGTCCGGAGAGCGAGTCAAGCTTCTGCCAAAGT-GCCACCAT 589
||||||| ||||||||||| ||||||||||||||||||||||| |||| || || |||||
Sbjct 357 TATGTCTTTCGGAGTTTGTATCCGGAGAGCGAGTCAAGCTTCTTCCAA-GTTGC-ACCAT 414
Query 590 GGATTCCATGTCCGGTGTATAGACAAATGGCTCAGTTCACACTCATCGTGTCCCACGTGC 649
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct 415 GGATTCCATGTCCGGTGTATAGAAAAATGGCTCAGTTCACACTCATCTTGTCCCACCTGC 474
Query 650 AGGCACTGCCTCATTCAGACTTGCAAAAAGATAGCTGGCTGCAGTGAGACGGTCTCATCA 709
|||||||||||||||||||||||||| ||||||| ||||||||||||||| || ||||||
Sbjct 475 AGGCACTGCCTCATTCAGACTTGCAAGAAGATAGTTGGCTGCAGTGAGACAGTATCATCA 534
Query 710 CCTAATCAACCACAAGAAAACATGCATATAGCACCGCTAGGACCGGAA 757
||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 535 CCTAATCAACCACAACAAAACATGCATATAGCACCGCTAGGACCGGAA 582
> AT1G49230.1 | Symbols: | RING/U-box superfamily protein | chr1:18209261-18210128
FORWARD LENGTH=868
Length=868
Score = 418 bits (226), Expect = 6e-116
Identities = 355/415 (86%), Gaps = 17/415 (4%)
Strand=Plus/Plus
Query 289 CTTTGATGCAAATGTTGTCATGGTTCTATCAGTCCTCTTATGTGCACTAGTTTGCTCACT 348
|||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 212 CTTTGATGCAAATGTTGTTATGGTCCTATCAGTCCTCTTATGTGCACTTGTTTGCTCACT 271
Query 349 TGGACTGC-ATTCTATCATAAGATGTGCAC-TGAGGTACTCCAATTTATTATCATCTGAA 406
|||||| | ||||||| ||||||||||| | |||||| |||||||||| || ||||||||
Sbjct 272 TGGACT-CAATTCTATAATAAGATGTGC-CTTGAGGTGCTCCAATTTAGTACCATCTGAA 329
Query 407 GC---TAGTGACGAGCTCT-CAGTCCGCTTGGCCAACACAGGGGTCAAACAAAAAGCCTT 462
|| | ||||| | || | | || |||||| |||||||||| ||||||| |||||||||
Sbjct 330 GCTGGTGGTGAC-AACTATCCTGTTCGCTTGACCAACACAGGAGTCAAACGAAAAGCCTT 388
Query 463 GAAGAGTTTCCAGACAGTAAGCTACACTGCAGAACTGAAGCTGCCTGGCCTAGATACAGA 522
||||||||||||||||||||| ||| || | ||||| || ||||||||| ||||||| ||
Sbjct 389 GAAGAGTTTCCAGACAGTAAGTTACTCTACTGAACTAAATCTGCCTGGCTTAGATACCGA 448
Query 523 GTGTGCCATATGTCTCTCGGAGTTTGT-GTCCGGAG-AGCGAGTCAAGCT-TCTGCCAA- 578
|||||| || ||||||||||| ||||| | ||| || | || || ||||| | |||| |
Sbjct 449 GTGTGCTATCTGTCTCTCGGAATTTGTAG-CCG-AGGAACGTGTGAAGCTGT-TGCCGAC 505
Query 579 AGTGCCACCATGGATTCCATGTCCGGTGTATAGACAAATGGCTCAGTTCACACTCATCGT 638
| ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| || |
Sbjct 506 A-TGCCACCATGGATTCCATGTCCGTTGTATAGACAAGTGGCTTAGTTCACACTCGTCCT 564
Query 639 GTCCCACGTGCAGGCACTGCCTCATTCAGACTTGCAAAAAGATAGCTGGCTGCAG 693
||||||| ||||||||||||||||| ||||| ||| | ||||| || | ||||||
Sbjct 565 GTCCCACCTGCAGGCACTGCCTCATCCAGACATGCGAGAAGATTGCCGACTGCAG 619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55772805495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5