BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479390
Length=1230
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18790.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1881 0.0
> AT3G18790.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING:
13 growth stages; CONTAINS InterPro DOMAIN/s: Isy1-like
splicing (InterPro:IPR009360); Has 1147 Blast hits to 965
proteins in 236 species: Archae - 12; Bacteria - 13; Metazoa
- 351; Fungi - 230; Plants - 49; Viruses - 9; Other Eukaryotes
- 483 (source: NCBI BLink). | chr3:6477699-6479548 FORWARD
LENGTH=1336
Length=1336
Score = 1881 bits (1018), Expect = 0.0
Identities = 1165/1235 (94%), Gaps = 13/1235 (1%)
Strand=Plus/Plus
Query 1 TCTTCTTTCCTTTGAGATTTTCTAGTGCAATCGTAACCTCCGAAGATCCAAGATGGCTCG 60
||| |||||||||||||||| |||||| |||||||||||||||||| |||||||||||||
Sbjct 103 TCTGCTTTCCTTTGAGATTTGCTAGTGTAATCGTAACCTCCGAAGACCCAAGATGGCTCG 162
Query 61 TAATGAAGAGAAAGCACAGTCGATGCTCAACAGGTTCATCACCCAGAAAGAAGCTGAGAA 120
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 163 TAATGAAGAGAAAGCACAGTCGATGCTCAACAGATTCATCACCCAGAAAGAATCTGAGAA 222
Query 121 GAAGAAGCCGAAAGAGCGTCGACCTTTCCTTGCATCTGAATGTCGAGATCTAGCGGAAGC 180
||||||||| |||||||||||||||| ||| ||||| |||||| |||||||||| |||||
Sbjct 223 GAAGAAGCCAAAAGAGCGTCGACCTTACCTCGCATCAGAATGTAGAGATCTAGCTGAAGC 282
Query 181 AGACAAATGGAGACAGCAAATTCTGAGAGAGATCGGAAGCAAAGTGGCTGAGATTCAGAA 240
|||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||
Sbjct 283 AGACAAATGGAGACAGCAAATTTTGAGAGAGATCGGTAGCAAAGTAGCTGAGATTCAGAA 342
Query 241 CGAAGGATTAGGAGAGCACCGACTTCGAGATCTAAACGACGAGATTAACAAGCTTCTCAG 300
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 343 CGAAGGATTAGGAGAGCACAGACTTCGAGATCTAAACGATGAGATTAACAAGCTTCTCAG 402
Query 301 GGAGAGATATCATTGGGAGAGGCGAATCGTTGAGCTAGGTGGTC-CGAATTATTCTAAAC 359
||||||||||||||||||| |||||||||||||||||||||||| | ||||| || ||||
Sbjct 403 GGAGAGATATCATTGGGAGCGGCGAATCGTTGAGCTAGGTGGTCAC-AATTACTCGAAAC 461
Query 360 ACTCTGCGAAAATGACGGATCTTGAAGGTAACATCATCGATGTACCTAACCCTAGTGGTC 419
| || ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 462 ATTCGGCGAAGATGACGGATCTAGAAGGTAACATAATCGATGTACCTAACCCTAGTGGTC 521
Query 420 GCGGTCCTGGTTATCGTTATTTCGGAGCTGCTAAGAAGCTTCCTGGAGTTAGAGAGCTTT 479
| ||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||
Sbjct 522 GTGGTCCTGGTTATCGTTACTTCGGAGCTGCTAAGAAACTTCCTGGTGTTAGAGAGCTTT 581
Query 480 TTGAGAAGCCTCCTGAGCTGAGGAAGCGTAAAACTAGGTATGATATATACAAAAGGATTG 539
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 582 TTGAGAAGCCTCCTGAGCTGAGGAAGCGTAAAACTAGGTATGATATATATAAAAGGATTG 641
Query 540 ATGCTAGCTATTACGGGTATAGAGATGATGAAGATGGTATTTTGGAGAAATTGGAGAGG- 598
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 642 ATGCTAGCTATTATGGGTATAGAGATGATGAAGATGGTATTTTGGAGAAGTTGGAGAGGA 701
Query 599 AATGCTGAAGGAGTGATGAGGAAAAGATCGGTGGAGGAATGGCGGAGATTAGATGAGGTT 658
||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 702 AAT-CTGAAGGAGGGATGAGGAAAAGATCGGTGGAGGAGTGGCGGAGATTAGATGAGGTT 760
Query 659 AGGAAGGAAGCTAGGAAAGGTGCTAGTGAGGTTGTGAGTGTTGGAGCTGCTGCTGCTGCG 718
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 761 AGGAAGGAAGCTAGGAAAGGTGCTAGTGAGGTTGTGAGTGTTGGAGCTGCAGCTGCTGCG 820
Query 719 GCgagggaagtgttgtttgaggaggaagaagatgtggttgaggaggagaggatggagagg 778
|||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 821 GCGAGGGAAGTGTTGTTTGAGGAGGAGGAGGATGTTGTTGAGGAGGAGAGGATGGAGAGG 880
Query 779 gagagagaggaggagaaagagagggagTTTGTGGTTCATGTTCCGTTGCCTGATGAGAAG 838
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 881 GAGAAAGAGGAGGAGAAAGAGAGGGAATTTGTGGTTCATGTTCCGTTGCCTGATGAGAAG 940
Query 839 GAGATAGAGAAGATGGTGTTGGAGAAGAAGAAGATGGATCTGCTTAGTAAGTATGCAAGT 898
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 941 GAGATTGAGAAGATGGTGTTGGAGAAGAAGAAGATGGATCTGCTTAGTAAGTATGCTAGT 1000
Query 899 GAAGATTTGGTTGAGCAGCAGACTGAGGCTAAATCCATGCTCAATATTCATAGATAGAAA 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 GAAGATTTGGTTGAGCAGCAGACTGAGGCTAAATCCATGCTCAATATTCATAGATAGAAA 1060
Query 959 GATGCGT-TGTTTTGCCAACAAACTCAGCCGCGCTGGTCTCTTGCCTAAAGAAGAAACGT 1017
||||| | |||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1061 GATGC-TCTGTTTTACCAACAAACTCAGCCGCGATGGTCTCTTGCCTAAAGAAGAAACGA 1119
Query 1018 TGTTGGGCGTTTGAAATACCGATTTCCTGGAAACAAATATGTGAGACTCAAGGAGAAGAG 1077
|||||||||||||||||| |||||| ||||||||||| || ||||||||||||||||
Sbjct 1120 TGTTGGGCGTTTGAAATAT-GATTTCATGGAAACAAATGTGAAAGACTCAAGGAGAAGAT 1178
Query 1078 ACAATGGCACTTGGAACTGAAATAGT--ATTCTCTTATGTAGCTCGACTTTTGTATCTTT 1135
|||||| |||||||||||||| |||| ||||| ||||||||||||||||||||||||||
Sbjct 1179 ACAATGTCACTTGGAACTGAACTAGTGTATTCTATTATGTAGCTCGACTTTTGTATCTTT 1238
Query 1136 ATACTTCTGAATGTAATGCTCATTGCCTGAGGTTTATGCATCGTTTCCTTTGGCTCTAAC 1195
||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||
Sbjct 1239 ATACTTCTGAATGTAATGCTCATTGCCTGAGGTTTATACATTGTT-CCTTTGGCTCTAAC 1297
Query 1196 TTGATTGGTGTTGCTATGCAGAGACATAAGTTGAG 1230
| |||||||| ||||||||||||||||||||||
Sbjct 1298 TAGATTGGTG---CTATGCAGAGACATAAGTTGAG 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60441456180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5