BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479390 Length=1230 Score E Sequences producing significant alignments: (Bits) Value AT3G18790.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1881 0.0 > AT3G18790.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isy1-like splicing (InterPro:IPR009360); Has 1147 Blast hits to 965 proteins in 236 species: Archae - 12; Bacteria - 13; Metazoa - 351; Fungi - 230; Plants - 49; Viruses - 9; Other Eukaryotes - 483 (source: NCBI BLink). | chr3:6477699-6479548 FORWARD LENGTH=1336 Length=1336 Score = 1881 bits (1018), Expect = 0.0 Identities = 1165/1235 (94%), Gaps = 13/1235 (1%) Strand=Plus/Plus Query 1 TCTTCTTTCCTTTGAGATTTTCTAGTGCAATCGTAACCTCCGAAGATCCAAGATGGCTCG 60 ||| |||||||||||||||| |||||| |||||||||||||||||| ||||||||||||| Sbjct 103 TCTGCTTTCCTTTGAGATTTGCTAGTGTAATCGTAACCTCCGAAGACCCAAGATGGCTCG 162 Query 61 TAATGAAGAGAAAGCACAGTCGATGCTCAACAGGTTCATCACCCAGAAAGAAGCTGAGAA 120 ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| Sbjct 163 TAATGAAGAGAAAGCACAGTCGATGCTCAACAGATTCATCACCCAGAAAGAATCTGAGAA 222 Query 121 GAAGAAGCCGAAAGAGCGTCGACCTTTCCTTGCATCTGAATGTCGAGATCTAGCGGAAGC 180 ||||||||| |||||||||||||||| ||| ||||| |||||| |||||||||| ||||| Sbjct 223 GAAGAAGCCAAAAGAGCGTCGACCTTACCTCGCATCAGAATGTAGAGATCTAGCTGAAGC 282 Query 181 AGACAAATGGAGACAGCAAATTCTGAGAGAGATCGGAAGCAAAGTGGCTGAGATTCAGAA 240 |||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||| Sbjct 283 AGACAAATGGAGACAGCAAATTTTGAGAGAGATCGGTAGCAAAGTAGCTGAGATTCAGAA 342 Query 241 CGAAGGATTAGGAGAGCACCGACTTCGAGATCTAAACGACGAGATTAACAAGCTTCTCAG 300 ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| Sbjct 343 CGAAGGATTAGGAGAGCACAGACTTCGAGATCTAAACGATGAGATTAACAAGCTTCTCAG 402 Query 301 GGAGAGATATCATTGGGAGAGGCGAATCGTTGAGCTAGGTGGTC-CGAATTATTCTAAAC 359 ||||||||||||||||||| |||||||||||||||||||||||| | ||||| || |||| Sbjct 403 GGAGAGATATCATTGGGAGCGGCGAATCGTTGAGCTAGGTGGTCAC-AATTACTCGAAAC 461 Query 360 ACTCTGCGAAAATGACGGATCTTGAAGGTAACATCATCGATGTACCTAACCCTAGTGGTC 419 | || ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 462 ATTCGGCGAAGATGACGGATCTAGAAGGTAACATAATCGATGTACCTAACCCTAGTGGTC 521 Query 420 GCGGTCCTGGTTATCGTTATTTCGGAGCTGCTAAGAAGCTTCCTGGAGTTAGAGAGCTTT 479 | ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| Sbjct 522 GTGGTCCTGGTTATCGTTACTTCGGAGCTGCTAAGAAACTTCCTGGTGTTAGAGAGCTTT 581 Query 480 TTGAGAAGCCTCCTGAGCTGAGGAAGCGTAAAACTAGGTATGATATATACAAAAGGATTG 539 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 582 TTGAGAAGCCTCCTGAGCTGAGGAAGCGTAAAACTAGGTATGATATATATAAAAGGATTG 641 Query 540 ATGCTAGCTATTACGGGTATAGAGATGATGAAGATGGTATTTTGGAGAAATTGGAGAGG- 598 ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 642 ATGCTAGCTATTATGGGTATAGAGATGATGAAGATGGTATTTTGGAGAAGTTGGAGAGGA 701 Query 599 AATGCTGAAGGAGTGATGAGGAAAAGATCGGTGGAGGAATGGCGGAGATTAGATGAGGTT 658 ||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 702 AAT-CTGAAGGAGGGATGAGGAAAAGATCGGTGGAGGAGTGGCGGAGATTAGATGAGGTT 760 Query 659 AGGAAGGAAGCTAGGAAAGGTGCTAGTGAGGTTGTGAGTGTTGGAGCTGCTGCTGCTGCG 718 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 761 AGGAAGGAAGCTAGGAAAGGTGCTAGTGAGGTTGTGAGTGTTGGAGCTGCAGCTGCTGCG 820 Query 719 GCgagggaagtgttgtttgaggaggaagaagatgtggttgaggaggagaggatggagagg 778 |||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||| Sbjct 821 GCGAGGGAAGTGTTGTTTGAGGAGGAGGAGGATGTTGTTGAGGAGGAGAGGATGGAGAGG 880 Query 779 gagagagaggaggagaaagagagggagTTTGTGGTTCATGTTCCGTTGCCTGATGAGAAG 838 |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 881 GAGAAAGAGGAGGAGAAAGAGAGGGAATTTGTGGTTCATGTTCCGTTGCCTGATGAGAAG 940 Query 839 GAGATAGAGAAGATGGTGTTGGAGAAGAAGAAGATGGATCTGCTTAGTAAGTATGCAAGT 898 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 941 GAGATTGAGAAGATGGTGTTGGAGAAGAAGAAGATGGATCTGCTTAGTAAGTATGCTAGT 1000 Query 899 GAAGATTTGGTTGAGCAGCAGACTGAGGCTAAATCCATGCTCAATATTCATAGATAGAAA 958 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1001 GAAGATTTGGTTGAGCAGCAGACTGAGGCTAAATCCATGCTCAATATTCATAGATAGAAA 1060 Query 959 GATGCGT-TGTTTTGCCAACAAACTCAGCCGCGCTGGTCTCTTGCCTAAAGAAGAAACGT 1017 ||||| | |||||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1061 GATGC-TCTGTTTTACCAACAAACTCAGCCGCGATGGTCTCTTGCCTAAAGAAGAAACGA 1119 Query 1018 TGTTGGGCGTTTGAAATACCGATTTCCTGGAAACAAATATGTGAGACTCAAGGAGAAGAG 1077 |||||||||||||||||| |||||| ||||||||||| || |||||||||||||||| Sbjct 1120 TGTTGGGCGTTTGAAATAT-GATTTCATGGAAACAAATGTGAAAGACTCAAGGAGAAGAT 1178 Query 1078 ACAATGGCACTTGGAACTGAAATAGT--ATTCTCTTATGTAGCTCGACTTTTGTATCTTT 1135 |||||| |||||||||||||| |||| ||||| |||||||||||||||||||||||||| Sbjct 1179 ACAATGTCACTTGGAACTGAACTAGTGTATTCTATTATGTAGCTCGACTTTTGTATCTTT 1238 Query 1136 ATACTTCTGAATGTAATGCTCATTGCCTGAGGTTTATGCATCGTTTCCTTTGGCTCTAAC 1195 ||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||| Sbjct 1239 ATACTTCTGAATGTAATGCTCATTGCCTGAGGTTTATACATTGTT-CCTTTGGCTCTAAC 1297 Query 1196 TTGATTGGTGTTGCTATGCAGAGACATAAGTTGAG 1230 | |||||||| |||||||||||||||||||||| Sbjct 1298 TAGATTGGTG---CTATGCAGAGACATAAGTTGAG 1329 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60441456180 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5