BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479391
Length=667
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18800.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1114 0.0
> AT3G18800.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures;
EXPRESSED DURING: 12 growth stages; Has 58 Blast hits
to 58 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:6479688-6480378 FORWARD
LENGTH=691
Length=691
Score = 1114 bits (603), Expect = 0.0
Identities = 646/667 (97%), Gaps = 1/667 (0%)
Strand=Plus/Plus
Query 1 TCTCTCTAACCAAAAACACTTTTTCTCTCTTCTCAGTCCCTTCAATGGCGGACTACGACG 60
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 16 TCTCTCTAACCAATAACACTTTTTCTCTCTTCTCAGT-CCTTCAATGGCGGACTACGACG 74
Query 61 ACGAAATTGACCACAGTAACCAACCTTTCATCCCCAAAGAAACTGCTCTACAAGCTCTAA 120
||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 75 ACGAAATTGACCAGAATAACCAACCTTTCATCCCCAAAGAAACTGCTCTACAAGCACTAA 134
Query 121 ACTCAATAATCCAGCTCCACTTCGAGAAAACCTTAGAGAAAAAACGAGCCATTGACCATC 180
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 135 ACTCAATAATCCAGCTCCACTTCGAGAAAACCTTAGAGAAGAAACGAGCCATTGACCACC 194
Query 181 AGAAGAAGAAGCTCCACAAGCTATTTCAGCTCTTCTTCATCTTCCTCGCCGTGATCTTCT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 195 AGAAGAAGAAGCTCCACAAGCTATTTCAGCTCTTCTTCATCTTCCTCGCCGTAATCTTCT 254
Query 241 TCTCTCTATCTCAACCCTCAGGTCGTCTCCACTGCCGCCATTGCTGGGCACCCATCTGCC 300
|||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 255 TCTCCCTCTCTCAACCCTCAGGTCGTCTTCACTGCCGCCATTGCTGGGCACCCATCTGCC 314
Query 301 TCCTCTCCTTCTCTCACCTCTTCTTCTACGTCTCCGTCGCTCAAACTCTCCGTTGCATCA 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 TCCTATCCTTCTCTCACCTCTTCTTCTACGTCTCCGTCGCTCAAACTCTCCGTTGCATCA 374
Query 361 ACGGTTTCAAGTACCAGCGTCGCTGCCATAAGCTCACTCTCGGCCTCGCCACTCATAAGC 420
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 375 ACGGCTTCAAGTACCAGCGTCGCTGCCATAAGCTCACTCTCGGTCTCGCCACTCACAAGC 434
Query 421 TCCGTTTCATCAAGTCAAGAATCGCTGCCGGCGATTTCCTCGGTGGTGGCGACGGTGACG 480
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 435 TCCGTTTCATCAAGTCAAGAATCGCTGCCGGAGATTTCCTCGGTGGAGGCGACGGTGATG 494
Query 481 AGGCCTCGGCTGCTGCTTGGGATCTGGAAGTTCCGTATCAAGAACCACCAGATAGCTACT 540
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 495 AGGCCTCTGCTGCTGCTTGGGATCTGGAAGTTCCGTATCAAGAACCACCTGATAGCTACT 554
Query 541 TTGGCAAGTTTAAGAGAAATTGGGCTCTCTATTTTGGGTTCTTGATCCTTCTTTACACTT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 TTGGCAAGTTTAAGAGAAATTGGGCTCTCTATTTTGGGTTCTTGATCCTTCTTTACACTT 614
Query 601 TCATGATCTCTTTCTCTGTCGTTATCCTCTGTTTCTGAGATCTCTAGAGTGGCATATTCG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 615 TCATGATCTCTTTCTCTGTCGTTATCCTCTGTTTCTGAGATCTCTAGAGTGGCATTTTCG 674
Query 661 TAAATTT 667
|||||||
Sbjct 675 TAAATTT 681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32250322374
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5