BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479402
Length=2457
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18860.1 | Symbols: | transducin family protein / WD-40 rep... 3951 0.0
AT3G18870.1 | Symbols: | Mitochondrial transcription terminati... 99.0 2e-19
> AT3G18860.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr3:6501668-6508553 FORWARD LENGTH=2590
Length=2590
Score = 3951 bits (2139), Expect = 0.0
Identities = 2367/2476 (96%), Gaps = 20/2476 (1%)
Strand=Plus/Plus
Query 1 GTTTCTCCTTCCTCAAGTCAC-TTTTGAGTCGCAACAATTTGGCGTTTGG--------AA 51
||||||||||||||||||||| |||||||||||| ||||||||||||||| ||
Sbjct 24 GTTTCTCCTTCCTCAAGTCACTTTTTGAGTCGCAGCAATTTGGCGTTTGGTATCTCTCAA 83
Query 52 TCTGCTG---CT-CTT-TC--TCA--GTCATGGATATCGATTTTAACGAGTACAAGCTCA 102
||||||| || ||| || ||| ||||||||||||||||| ||||||||||||||||
Sbjct 84 TCTGCTGCTTCTCCTTCTCAGTCATGGTCATGGATATCGATTTCAACGAGTACAAGCTCA 143
Query 103 GGTGCGAGCTTCTTGGCCACGATGATGATGTTCGTGGGATTTGTGTGTGTAGTGATGATA 162
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 144 GGTGCGAGCTTCATGGCCACGATGATGATGTTCGTGGGATTTGTGTGTGTAATGATGAGA 203
Query 163 ATATAGCTACTTCATCAAGAGACAGAACCATCAGGGTTTGGTCATTGGATCCATCAGATA 222
|||||||||||||||||||||| || ||||| |||||||||||| |||||||||| ||||
Sbjct 204 ATATAGCTACTTCATCAAGAGATAGGACCATAAGGGTTTGGTCACTGGATCCATCTGATA 263
Query 223 AGCGCAAGTATACCTCCTCTAAAATTCTGCTGGGGCATACTAGCTTTGTTGGGCCACTTG 282
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 264 AGCGCAAGTATACCTCCGAGAAAATTCTGCTGGGTCATACTAGCTTTGTTGGGCCACTTG 323
Query 283 CGTGGATTCCACCAACTGATGAATACCCTGAAGGAAGACTCGTCTCTGGGAGTATGGATA 342
| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 324 CATGGATCCCACCAACTGATGAATACCCTGAAGGAAGACTTGTCTCTGGGAGTATGGATA 383
Query 343 CTTCCGTGTTTGTTTGGAATCTGATAAATGGAGAGAATATTCAGACATTGAAAGGTCATC 402
||| ||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 384 CTTTCGTTTTTGTTTGGAATCTGATGAATGGAGAGAATATTCAGACATTGAAGGGTCATC 443
Query 403 AGATGCAAGTCACTGGTGTTGCTATTGATAAAGAGGACATAGTGTCATCTTCAGTTGATC 462
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 444 AGATGCAAGTCACTGGTGTTGCTATTGATAATGAGGACATAGTTTCATCTTCAGTTGATC 503
Query 463 AAACCCTCAAACGATGGAGAAACGGTCAGCTTGTTGAATCTTGGGAGGCACACAAGTCGC 522
||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 504 AAACCCTGAAACGATGGAGAAACGGTCAGCTTGTTGAATCTTGGGATGCACACCAGTCGC 563
Query 523 CTGTCCAGGCAGTGATAAAGCTGCCATCTGGTCAGCTCGTTTCAGGTTCAAGTGACGCCA 582
|| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 564 CTATCCAGGCAGTGATAAGGCTGCCATCTGGTGAGCTCGTTTCAGGTTCAAGTGACGCCA 623
Query 583 GTCTCAAACTCTGGAAAGGAAAAACAAGTCTGCAAACTCTTTCAGGGCATACAGATACTG 642
|||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 624 GTCTCAAACTCTGGAAGGGTAAAACGAGTCTGCAAACTCTTTCAGGGCATACAGATACTG 683
Query 643 TTAGAGGGTTAGCTGTGATGCCTGATTTAGGATTTCTTTCCGCATCACATGATGGTTCAA 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 TTAGAGGGTTAGCTGTGATGCCTGATTTAGGATTTCTTTCCGCATCACATGATGGTTCAA 743
Query 703 TCAGATTATGGGCACTAAGTGGCGAAGTTCTTCTGGAGATGGTTGGCCACACCTCCCTTG 762
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 744 TCAGGTTATGGGCACTAAGTGGCGAAGTTCTTCTTGAGATGGTTGGCCACACCTCCCTTG 803
Query 763 TTTATTCAGTTGACGCACATTCGTCTGGCCTTATTGTTAGTGGCAGTGAAGATCGCCATG 822
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 804 TTTATTCAGTTGACGCACATTCGTCTGGCCTTATTGTTAGTGCCAGTGAAGATCGTCATG 863
Query 823 CCAAGATATGGAAAGATGGAGTCTGCGTTCAGAGTTTGGAACACCCAGGCTGTGTCTGGG 882
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 864 CCAAGATATGGAAAGATGGAGTCTGCGTTCAGAGTTTGGAACACCCAGGCTGTATCTGGG 923
Query 883 ATGCCAAGTTTTTGGAAAGCGGAGATATTGTGACGGCATGTTCAGATGGAGTGGTTCGTG 942
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 924 ATGCCAAGTTTTTGGAAACCGGAGATATTGTGACAGCATGTTCAGATGGAGTGGTTCGTG 983
Query 943 TTTGGACAGTACGTCATGACGCGATTGCAGATCAGATGGAGATTGATGCCTATGATTCCC 1002
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 984 TTTGGACAGTACGTCATGATGCGATTGCAGATCAGATGGAGATTGATGCCTATGATTCCC 1043
Query 1003 AAATTTCTCAGTACAAGTTGAGCAGGAAAAAGGTTGGAGGATTGAAACTTGACGAGCTGC 1062
|||||||||| ||||| | ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1044 AAATTTCTCAATACAAACTAAGCAGGAAAAAGGTTGGCGGATTGAAACTTGACGAGCTGC 1103
Query 1063 CAGGGCTTGATTCTCTCACGTCACCAGGTACCAGTGATGGCCAGACAAAAGTAGTAAGGG 1122
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 CAGGGCTTGATTCTTTGACGTCACCAGGTACCAGTGATGGCCAGACAAAAGTAGTAAGGG 1163
Query 1123 AAGGAGACAATGGGGTTGCTTATGCATGGAATATGAAAGAACAGAGATGGGACAAAATTG 1182
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 AAGGAGACAATGGTGTTGCTTATGCATGGAATATGAAAGAACAGAGATGGGACAAAATTG 1223
Query 1183 GTGAGGTTGTTGATGGCCCCGATGGTGTGGCTGATCGTCCAATTCACGAGGGAGTTCAAT 1242
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1224 GTGAGGTTGTTGATGGCCCAGATGGTGTGGCTGATCGTCCAATTCACGAGGGAGTTCAAT 1283
Query 1243 ATGATTTTGTTTTCGATGTCGACATTGGTGATGGGGAACCTATCCGGAAGCTGCCTTACA 1302
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1284 ATGATTTTGTTTTCGATGTTGACATTGGTGATGGGGAACCTATCCGGAAGCTACCTTACA 1343
Query 1303 ATCGATCAGACAATCCTTATGATGCAGCTGACAAGTGGCTTCTCAAAGAGAATCTCCCCT 1362
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1344 ATCGATCAGACAATCCTTATGATGCAGCTGACAAGTGGCTTCTAAAAGAGAATCTCCCCT 1403
Query 1363 TTGCATATCGGCAGCAGATTGTTGAATTTATATTACAAAATTCTGGGCAGAAAGACTTCA 1422
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404 TTGCATATCGGCAGCAAATTGTTGAATTTATATTACAAAATTCTGGGCAGAAAGACTTCA 1463
Query 1423 ACTTTAATCCATCTTTTCGTGATCCCTTCACTGGCGCAAATGCTTATGTGCCTGGGCAAG 1482
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1464 ACTTTAATCCATCTTTTCGTGATCCCTTCACCGGCGCAAATGCTTATGTGCCTGGGCAAG 1523
Query 1483 CATCTCAG-ACAGCTGCAACTCCGGCAAAACCTTTATACAAGCACATTCCaaaaaaaGGT 1541
|||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1524 CATCTC-GTACAGCTGCAACTCCGGCAAAACCTTTATACAAGCACATTCCAAAAAGAGGT 1582
Query 1542 GTGCTAGTTTTCGATGTTGCTCAATATGATGGGATTCTTAAAAAGATGACAGAGTTCAAT 1601
|||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1583 GTGCTAGTTTTCGATGCTGCTCAATATGACGGGATTCTGAAAAAGATGACAGAGTTCAAT 1642
Query 1602 ACTACTTTACGATCTGACTCAGTAAACAATGACAAGTCCCTGACCGAACTCGAAGTATCC 1661
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1643 ACTACTTTACGATCTGACGCAGTAAACAATGACAAGTCCCTGACCGAACTCGAAGTATCC 1702
Query 1662 AGAGTAGGCGCAATCGTTAATATACTCAAGGACACATCACACTACCACTCTACCAATTTT 1721
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1703 AGAGTAGGCGCAATCGTTAATATACTGAAGGACACATCACACTACCACTCTACCAATTTT 1762
Query 1722 GCTGACATGGATATTGCTTTGCTTTTGAAAGTGCTACAAGCATGGCCACCTGCAATGATG 1781
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1763 GCTGACATGGATATTGCTTTGCTTTTGAAAGTGCTACAAGCATGGCCACCGGCAATGATG 1822
Query 1782 TTTCCTGCTACTGATATAGTCAGGATGCTCGTTTTGCATCCTCATGGAGCAAGTCTACTT 1841
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 1823 TTTCCTGCTACTGATATAGTAAGGATGCTCGTTTTGCATCATCATGGAGCAAGTCTACTT 1882
Query 1842 ATCAAGCATGTGGAAAACAACAATGACCTGCTTTTGGATTTGATAAAGAAAGTTACAGAA 1901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1883 ATCAAGCATGTGGAAAACAACAATGACCTGCTTTTGGATTTGATAAAGAAAGTTACAGAA 1942
Query 1902 GATTCTGCTCTTCCTGCAAATCTTTTAACGACTGTTCGTGTCCTGGTTAATCTATTCAAG 1961
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1943 GATTCTGCTCTTCCTGCAAATCTTTTAACGACTGTTCGTGTCCTTGTTAATCTATTCAAG 2002
Query 1962 AATTCTTCCTTTCATTACTGGCTACAGACGCATCATAGTCAAATTCTTGATGCCTTCTCA 2021
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2003 AATTCTTCATTTCATTACTGGCTACAGACGCATCATAGTCAAATTCTTGATGCCTTCTCA 2062
Query 2022 AACTGTTATTCATCCCCAAATAAGAATCTGCAGTTGGCTTATTCGACGTTGCTTCTCAAT 2081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2063 AACTGTTATTCATCCCCAAATAAGAATCTGCAGTTGGCTTATTCGACGTTGCTTCTCAAT 2122
Query 2082 TATGCAGTGCTATTAATAGAAAAGAAGGATCAAGAAGGTCAAGCTCAAGTCCTTTCAGCA 2141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2123 TATGCAGTGCTATTAATAGAAAAGAAGGATCAAGAAGGTCAAGCTCAAGTCCTTTCAGCA 2182
Query 2142 GCTTTGCAGGTTGCAGAAGAGGAGGCTGCAGATGTTGATTCCAAGTTCCGGAGTTTGGTA 2201
||||||||||| |||||||| || |||||||||||||||||||||||||||||| |||||
Sbjct 2183 GCTTTGCAGGTAGCAGAAGAAGAAGCTGCAGATGTTGATTCCAAGTTCCGGAGTCTGGTA 2242
Query 2202 GCAATTGGGTCACTGATGCTTGAAGGTCTGGTGAAGAAGATAGCAATAGATTTTGATGTA 2261
|||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 2243 GCAATTGGCTCACTGATGCTTGAAGGTCTCGTGAAGAAGATAGCGATAGATTTTGATGTA 2302
Query 2262 GAGAGCATTGCAAAATCAGCAAAGGCCTCAAAGGAAGCCAAGATTGCAGAAGTTGGGGCC 2321
|||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 2303 GAGAGCATCGCAAAATCAGCGAAGGCGTCAAAGGAAGCCAAGATTGCAGAAGTTGGGGCC 2362
Query 2322 GATATCGATCTTGTAATTCGTCAGTAACCTTAAAAGAGAGTCTGAAATTAAACCCTAGAT 2381
|||||||||||||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct 2363 GATATCGATCTTGTAATTCGTCAGTAACCTTAAAAGAGAGTCTGTGATCGAACCCGGGAT 2422
Query 2382 TTGGATTTTGGATGATTCCCTCAACATTTTTCGTATGATTCAGAATCACTTTTCCTTGAA 2441
||| ||||| ||||||||||||| | ||||| ||||||||| |||||||||||||||||
Sbjct 2423 TTGAATTTTCAATGATTCCCTCAAGAATTTTCATATGATTCAAAATCACTTTTCCTTGAA 2482
Query 2442 ATGCAATTCAAATTTT 2457
||||||||||| ||||
Sbjct 2483 ATGCAATTCAACTTTT 2498
> AT3G18870.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr3:6508385-6509343 REVERSE LENGTH=959
Length=959
Score = 99.0 bits (53), Expect = 2e-19
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 2381 TTTGGATTTTGGATGATTCCCTCAACATTTTTCGTATGATTCAGAATCACTTTTCCTTGA 2440
|||| ||||| ||||||||||||| | ||||| ||||||||| ||||||||||||||||
Sbjct 959 TTTGAATTTTCAATGATTCCCTCAAGAATTTTCATATGATTCAAAATCACTTTTCCTTGA 900
Query 2441 AATGCAATTCAAATTTT 2457
|||||||||||| ||||
Sbjct 899 AATGCAATTCAACTTTT 883
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121905671490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5