BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg479404

Length=429
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G18880.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pr...   505    2e-142


> AT3G18880.1 | Symbols:  | Nucleic acid-binding, OB-fold-like 
protein | chr3:6509540-6510625 FORWARD LENGTH=568
Length=568

 Score =  505 bits (273),  Expect = 2e-142
 Identities = 315/336 (94%), Gaps = 0/336 (0%)
 Strand=Plus/Plus

Query  1    AGCTCGTTCGGGAAAATGAAGGCAGTGATAGGCACAGTGGTGTCGAACAAAATGCAGAAG  60
            |||||||| || |||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct  34   AGCTCGTTAGGAAAAATGAAGGCAGTGATAGGGACAGTGGTGTCGAACAAAATGCAGATG  93

Query  61   TCGGTAGTGGTCGCCGTCGATAGACTTTTCCATAACAAGCTCTACAATCGATATGTCAAA  120
            ||||| ||||| |||||||| ||||| ||||| || ||  ||||||||||||||||||| 
Sbjct  94   TCGGTGGTGGTAGCCGTCGACAGACTCTTCCACAATAATATCTACAATCGATATGTCAAG  153

Query  121  CGTACTTCCAAGTTCATGGCTCACGATGAAAAGGACTCCTGTAACATCGGCGATCGAGTG  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  154  CGTACTTCCAAGTTCATGGCTCACGATGAAAAGGACTCCTGTAACATCGGCGATCGAGTG  213

Query  181  AAATTGGATCCTTCAAGGCCTTTAAGCAAGCATAAGCATTGGATTGTTTCAGAGATCATA  240
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct  214  AAATTGGATCCTTCAAGGCCTTTGAGCAAGCATAAGCATTGGATTGTTTCAGAAATCATA  273

Query  241  AAGAAAGCACGCATTTATTCTCCACAGGCTGCTGCTGCTGCTCTCAATTCCTCCTCCTCC  300
            |||||||||||||||||||||||||| ||||||||||| ||||||||||||||  |||||
Sbjct  274  AAGAAAGCACGCATTTATTCTCCACAAGCTGCTGCTGCGGCTCTCAATTCCTCAACCTCC  333

Query  301  ATTGCTGAGCAGTCTCCTGTTTCGTCTTCCTAAGTT  336
            |||||||||||| | |||||||||||||||||||||
Sbjct  334  ATTGCTGAGCAGCCCCCTGTTTCGTCTTCCTAAGTT  369


 Score = 91.6 bits (49),  Expect = 5e-18
 Identities = 65/72 (90%), Gaps = 4/72 (6%)
 Strand=Plus/Plus

Query  360  CGTAGAATCATCATAAACAGAGAATGTGGTAA-TTGAC-AACATAATCCATCAAGCTGTA  417
            ||||| | ||||| |||||||||||||||||| ||  | |||||||||||||||||||||
Sbjct  421  CGTAGCACCATCAGAAACAGAGAATGTGGTAACTT--CGAACATAATCCATCAAGCTGTA  478

Query  418  GTGTAGTGCTTT  429
            ||||||||||||
Sbjct  479  GTGTAGTGCTTT  490



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20358438345


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5