BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479408
Length=1814
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18930.1 | Symbols: | RING/U-box superfamily protein | chr3... 2333 0.0
> AT3G18930.1 | Symbols: | RING/U-box superfamily protein | chr3:6523379-6525543
REVERSE LENGTH=1959
Length=1959
Score = 2333 bits (1263), Expect = 0.0
Identities = 1619/1775 (91%), Gaps = 87/1775 (5%)
Strand=Plus/Plus
Query 1 TGTTAATTTTAATTT-TCCCAATACCGTTTACCTTTAGTCAACGCttttttttttCCACC 59
||| |||||| |||| |||||||||||||||||||||||||||| ||||||| |||||
Sbjct 23 TGTAAATTTT-ATTTATCCCAATACCGTTTACCTTTAGTCAACG--ATTTTTTTCCCACC 79
Query 60 AAAGTCCCCAAATACACATTTACGTTTAAAGTTTAAACCTTTCACTGGAACCTCTGTTTC 119
||||||||||||||||| | ||||| |||||||||||||||| ||| ||||||||
Sbjct 80 AAAGTCCCCAAATACAC---T-CGTTT-GCGTTTAAACCTTTCACTTGAAACTCTGTTTT 134
Query 120 AGACTC------TT-TT---C---TTTG--T-TAT--AC-------TTTTTT-ACCAAAC 153
|||||| || || | |||| | | | | |||||| |||||||
Sbjct 135 AGACTCTTTTATTTGTTAGACTTTTTTGTTTGTTTCGTCGTTGTTGTTTTTTGACCAAAC 194
Query 154 TACCATGCGATTTGTCGCCCCACCGCCTCGTTCCGGCGATATCTCACCATCTCCTTCACC 213
||||||||||| ||||| |||||||||||||||||||||| |||||| || ||||||||
Sbjct 195 CACCATGCGATTCGTCGCGCCACCGCCTCGTTCCGGCGATAACTCACCGTCACCTTCACC 254
Query 214 ATCTTCCGGTGTATCTGAAGAGATTCTCTCCCGCTCTTCAGATCCTCCTTTGGAGTTTAG 273
|||||||||| |||| ||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 255 ATCTTCCGGTATATCCGAAGAGATTCTCTCCCGTTCTTCGGATCCTCCTTTAGAGTTTAG 314
Query 274 TCCTCCATTGATCGCCATGGTGGTGGTTCTAGCCGCCGCTTTTCTATTCGTAACTTACTC 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 TCCTCCATTGATCGCCATGGTGGTGGTTCTAGCCGCCGCTTTTCTATTCGTAACTTACTC 374
Query 334 TCGTCTCATCTCCCGCCGTTTTCTTTCACCTCTATTCCGTCGTTTTAGACGGTGGCGATG 393
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 375 TCGTCTCATCTCCCGCCGTTTTCTTTCACCTCTATTCCGTCGTTTTAGAAGGTGGCGATG 434
Query 394 CCGACGGCGCCGTCTCCTTCACCTATCTTCAGCTTCCTCTGCTTCAACATCATCCTCTGA 453
||| || ||||||||||||||| ||||||||||||||||||||||||| |||||||| ||
Sbjct 435 CCGTCGACGCCGTCTCCTTCACTTATCTTCAGCTTCCTCTGCTTCAACTTCATCCTCCGA 494
Query 454 TCTCCGATCCTTTTCCCCTTTCCCTTTCGACTCTTTTCATTACACTTCTTACTCACCTTA 513
||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 495 TCTCCGATCATTTTCACCTTTCCCTTTCGACTCTTTTCATTACTCTTCTTACTCACCTTA 554
Query 514 CGGATTAGATGATTCCGTTATCAAAACACTACCGTTGTTTCTCTACTCCGCCGCCGCTTG 573
||||||||| ||||||||||||||||| ||||| ||||||||||||||||||| |||||
Sbjct 555 CGGATTAGACGATTCCGTTATCAAAACTTTACCGCTGTTTCTCTACTCCGCCGCTGCTTG 614
Query 574 CACCGGGAAAA-CCGCGGTGGGGAAAACCTCCGCCGCAAATTGCAGAGATTGCGCTGTTT 632
|||| |||||| ||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 615 CACC-GGAAAACCCGCGGTGGGGAAAACCTCCGCCGCCAATTGCAGAGATTGTGCTGTTT 673
Query 633 GTTTGTTGGAATTCGAAGAAGGTGATTATGTACGAACACTACCTTTATGCTTCCATGCTT 692
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 674 GTTTGTTGGAATTCGAAGAAGGTGATTATGTACGAACACTTCCGTTATGCTTCCATGCTT 733
Query 693 TTCACCTTGAATGCATCGATGAATGGCTCCGATCTCACCCTAACTGTCCGTTATGCCGTA 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 TTCACCTTGAATGCATCGATGAATGGCTCCGATCTCACCCTAACTGTCCGTTATGCCGTA 793
Query 753 CGGCGATTCTCGGATCCGCCGCTGCCGGAGTTTTAACACCTATGTCTCCGTTCGTTCCGT 812
||||||||||||||| | | |||||||||||||| |||||||| |||||||||||||
Sbjct 794 CGGCGATTCTCGGAT----C-C-GCCGGAGTTTTAACGCCTATGTCGCCGTTCGTTCCGT 847
Query 813 TAATGGCTCCTCGAATTCGTCCGAGCCTCGATGATGATGCTGAGACTAACGCGATCATCA 872
||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||
Sbjct 848 TAATGGCTCCTCGAATTCGTCCGAGTCTCGATGATGA---AGAGAATAACGCGATCATCA 904
Query 873 TCCGCGGCGAAATCACACCGTCGCGGAGCAGTTGGAACACAGTCGCTGCTGCGGCGGTGA 932
|||||||||||||||||||||||||||||| |||||||||| | | ||||| || | |
Sbjct 905 TCCGCGGCGAAATCACACCGTCGCGGAGCAATTGGAACACAAT--C-GCTGC--CGAT-A 958
Query 933 CGACGAACGATCAGGAGATCACAGCGTCGGTGGAAGAGCAATCATCACCGGCGATTTCTC 992
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 959 CGACGAACGATCAGGAGATCAGAGCGTCGGTGGAAGAGCAATCATCACCGGCGATTTCTC 1018
Query 993 GGTTCCGGGAGCTGAAGAGATCGTACTCGTTCGAATGCGAGAGAGAATCTGAATCAGAGA 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GGTTCCGGGAGCTGAAGAGATCGTACTCGTTCGAATGCGAGAGAGAATCTGAATCAGAGA 1078
Query 1053 GAGTAACGATGGAGCCAGCGACGGTGTCTCCATGGAGATACCGGAGATCTACATGGAACA 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GAGTAACGATGGAGCCAGCGACGGTGTCTCCATGGAGATACCGGAGATCTACATGGAACA 1138
Query 1113 AACGTCAATCACCGTTCGGAAACCTAATTTCGAAATCAAGAGTGTTCTCGTTCCGTTACT 1172
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1139 AACGTCAATCACCGTTCGGAAACCTAATATCGAAATCAAGAGTGTTCTCGTTCCGTTACT 1198
Query 1173 ACAGAAGCACGAAATCACCGTTCTTCCGACGGAGATCATCGGCGGGAGTGTTTTACCCGA 1232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 ACAGAAGCACGAAATCACCGTTCTTCCGACGGAGATCATCGGCGGGAGTGTTTTACCCGA 1258
Query 1233 TATCGGAACGGATTCCAGCGACGGGAAGCTCATCACGGCGGACGAAATCGATGACGAGTC 1292
|||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1259 TATCAGAACGGATTCCAGCGACGGGAAGCTCATCGCGGCGAACGAAATCGATGACGAGTC 1318
Query 1293 CGATGTTCTTCAGAACAGCACCACACTCATCGAGCCGGTTAAGATGCGGAGATCCAGAGG 1352
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1319 CGATGTTCTTCAGAACAGCACCGCACTCATCGAGCCGGTTAAGATGCGGAGATCCAGAGG 1378
Query 1353 CACTGTTGTCGCCGGAGAGATGGAGAAGAAGGGACACGTGTAGGGTGGAGATGTAAGATA 1412
||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1379 CACTGTTATCGCCGGAGAGATGGAGAAGAAGAGACACGTGTAGGGCAGAGATGTAAGATG 1438
Query 1413 AAATTTGGACGGTGGTGATGATaaaaa-aa-T-T-GAAGTGGAAGGAGAGAGCATTAATG 1468
||||||||||||||||||||||||||| || | | |||||||||||||||||||||||||
Sbjct 1439 AAATTTGGACGGTGGTGATGATAAAAAGAAATATTGAAGTGGAAGGAGAGAGCATTAATG 1498
Query 1469 GAATGTGGGGTTTAAGCATTTAATGGAATTAAAATGAACGAAACAGA-GAAGATAGAGAG 1527
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1499 GAATGTGGGGTTTAAGCATTTAATGGAATTAAAATGAACGAAACAGAAGAAGATAGAGAG 1558
Query 1528 ATTCAGAAATTGCTCAGCTGCTCACATACTATCT-CA-GACCAGAGACGCCAAGACGATG 1585
||||||||||||||||||||||||||| | | | || ||| | ||||||||||||||||
Sbjct 1559 ATTCAGAAATTGCTCAGCTGCTCACATTC-A-CAACAAGACAAAAGACGCCAAGACGATG 1616
Query 1586 AAGGTTTTGGAGCCTGTACGGTGGCGTTTTGGTTG--GA---GTT--------------- 1625
|||||||||||||||||||| |||||||||| || || |||
Sbjct 1617 AAGGTTTTGGAGCCTGTACGACGGCGTTTTGGCTGATGATTCGTTTTTTCCTCTCTTTGG 1676
Query 1626 A-T---CAAAATGCATTTAACTTCCAAAGCTGCCAAAGTTATTATAGAAACGAAAGTCAA 1681
| | ||||||||||| |||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1677 AGTTATCAAAATGCATT-AACTTCAAAAGCTGCCAAAGTTATCATAGAAACGAAAGTCAA 1735
Query 1682 CAAACCCATTAAATTTCGTTTCTATAATAACTTTA 1716
||| | |||| ||||||||||||||||||||||||
Sbjct 1736 CAA-CACATTGAATTTCGTTTCTATAATAACTTTA 1769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89758574460
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5