BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479410
Length=1007
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18940.1 | Symbols: | clast3-related | chr3:6526958-6529149... 1622 0.0
> AT3G18940.1 | Symbols: | clast3-related | chr3:6526958-6529149
REVERSE LENGTH=1068
Length=1068
Score = 1622 bits (878), Expect = 0.0
Identities = 966/1009 (96%), Gaps = 4/1009 (0%)
Strand=Plus/Plus
Query 1 TTTGAGAAACTTGCAATCCGATTCTGTGACCAGTGTTTTGCCTTCATAAATGGAGTTTGT 60
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 51 TTTGGGAAACTTGCAATCCGATTCTGTCACCAGTGTTTTGCCTTCATAAATGGAGTTTGT 110
Query 61 TGCTGAAGAAGGAAAGCTAGTGAATGAAGATTGCTCGACTTTAGTTCTCCCTGCATTGTC 120
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 111 TGTTGAAGAAGGAAAGCTAGTGAATGAAGATTGCTCGACTTTAGTTCTCCCAGCATTGTC 170
Query 121 AATTGGGAATGTGGGGCAGCTCGCTGTTGATCTTCTAGTGTCATCTACTGGTGCAGAGAG 180
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 AATTGGGAATGTAGGACAGCTCGCTGTTGATCTTCTAGTGTCATCTACTGGTGCAGAGAG 230
Query 181 AGTTGGTTATCTCGATGATCCATATCTGCTTCCTTGTGTTGGAAATGACGCTTATGGCCC 240
|||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 231 AGTTGGTTATCTTGATGATCCAAATCTGCTTCCTTGTGTTGGAAATGATGCTTATGGCCC 290
Query 241 TCTTCCTTGTGGCGATATCGCCCTTCCTCTTGAGGTTTATGAGTCATCTTCAATTGCTAC 300
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 291 TCTTCCTTGTGGCGAGATCGCCCTTCCTCTCGAGGTTTATGAGTCATCTTCAATTGCTAC 350
Query 301 TACTCTTGCTCAGCAACGGTCTCCAGTTGCGAAGGGAATGATGATTAAATTTGCGGAGAA 360
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 351 TACCCTTGCTCAGCAACGGTCTCCAGTTGCAAAGGGAATGATGATTAAATTTGCGGAGAA 410
Query 361 TATAGCCGATTTTGCTGCTTCAAGTGGAAAGAAGCATGTTATTGTGTTATCGAGTTTAGA 420
||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 411 TATAGCCAATTTTGCTGCTTCAAGTGGAAAGAAGCACATCATTGTGTTATCGAGTTTAGA 470
Query 421 CTTCCAAAGGCTGCATAACTTGGATATGTCGAGAGGCCCACAGGTGTATTATCTGTCTAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 CTTCCAAAGGCTGCATAACTTGGATATGTCGAGAGGCCCACAGGTGTATTATCTGTCTAA 530
Query 481 CGCCGAATCTGGTGGAAGAGATGATCACTGTGAAAGGCTTGGATTTGGAAGATTGCGCGA 540
||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 531 CGCTGAATCTGATGGAAGAGATGATCACTGTGAAAGGCTTGGGTTTGGAAGATTGCACGA 590
Query 541 GTATGATTCAGAAGGAAGATGTTGGAAGTACCTTAGCTCTGTCTTTGAGAAGAACAGTGA 600
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 591 GTATGATTCAGAAGGAAGATGTTGGAAGTACCTTAGCTCTGTCTTTGAAAAGAACAGTGT 650
Query 601 AGAAGAGCTGACTTTCCCTTCAGAAGATGAACTTGAAGACATAGACTACTATCCAAGCTT 660
|||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 AGAAGAGCTGGCGTTGCCTTCAGAAGATGAACTTGAAGACATAGACTACTATCCAAGCTT 710
Query 661 GCCATTTGCAGCTCTGTTCTCAGCTTTTAAGGCAAGAGGCTTGAAGGTGACATGCCTGCT 720
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 711 GCCATTTGCAGCTCTTTTCTCAGCTTTTAAGGCAAGAGGCTTGAAGATGACATGCCTGCT 770
Query 721 ATGTTACTGTTCTGAAGGAGACAACATTCCTGAAGCATTTCTTCTAGCTGAGGCTGCATC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 771 ATGTTACTGTTCTGAAGGAGACAACATTCCTGAAGCATTTCTTCTAGCTGAGGCTTCATC 830
Query 781 TAAGCTTACGGGTCTGACTCCTGATAAGTTCCACGGGGAAGAAGGTGGGAAATGGCGGAT 840
|||||||| ||||||||||||||| |||||||| |||||||||||||||||||||| |||
Sbjct 831 TAAGCTTATGGGTCTGACTCCTGACAAGTTCCATGGGGAAGAAGGTGGGAAATGGCAGAT 890
Query 841 ACCGTATTCATGGAAGAGTATGTATGGAGCTCCTCCAGATATGTCCATGTTTTAGGACTG 900
|||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 891 ACCGTATTCATGGAAGAGTATGTATGGAGCTCCTCCGGATATGTCTATGTTTTAAGACTG 950
Query 901 TTGTTGGAGCTCACAGAT-TCAGACACCGAGGTTGTTGTAGTAGTA-AGATTATGATCCA 958
|||||||||||||||| | ||||||||||||||||||||||| ||| | |||||||||||
Sbjct 951 TTGTTGGAGCTCACAG-TGTCAGACACCGAGGTTGTTGTAGTGGTACA-ATTATGATCCA 1008
Query 959 ATGAGAAGTTTATGAACATTTGAGATGGTTTAATTCGATAGAGACCCCT 1007
|||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1009 ATGAGAAGTTTATGAACATTTGAGATGGTTTAATCCGATAGAGACACCT 1057
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49329932354
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5