BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479414
Length=1986
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18970.1 | Symbols: MEF20 | mitochondrial editing factor 20... 2785 0.0
AT3G18960.1 | Symbols: | AP2/B3-like transcriptional factor fa... 163 5e-39
AT4G01580.1 | Symbols: | AP2/B3-like transcriptional factor fa... 122 9e-27
> AT3G18970.1 | Symbols: MEF20 | mitochondrial editing factor
20 | chr3:6543318-6545432 REVERSE LENGTH=2024
Length=2024
Score = 2785 bits (1508), Expect = 0.0
Identities = 1861/2024 (92%), Gaps = 54/2024 (3%)
Strand=Plus/Plus
Query 4 ATTGCGTCAGTGTCTCG-TTTCT-TCTCGGGTTTACTTTATGTTTTCGATGTGGATAAGT 61
||||||||||||||||| ||| | ||||||||||||||| |||| |||||||||||||||
Sbjct 8 ATTGCGTCAGTGTCTCGTTTTTTCTCTCGGGTTTACTTTGTGTTATCGATGTGGATAAGT 67
Query 62 TGTTTTCACCCCATTCTATATAGAACCTC-GGAGTGGAACTCAATTTGTTTGAGTAG--- 117
|||||| ||| || | |||||| |||||| ||||||||||||| ||||||||||||
Sbjct 68 TGTTTTTACCTCA-T-TATATATAACCTCTTGAGTGGAACTCAAATTGTTTGAGTAGAAC 125
Query 118 -AAC-AAGTTAGGGTTTAAGAAGAAGTCTGTAAATACCTAATCTCCATC-AA------A- 167
||| |||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 126 AAACAAAGTTAGGGTTTAAGAAGAAGTCTGTAAATACCTAATCTCCATCAAATTTGGTAC 185
Query 168 -T-T----A-G--G-T-A-TATGATGAAGATGGGTTTGTGTTGTAGA---TTC--T-TTT 209
| | | | | | | ||||||||||||||||||||| |||||| ||| | |||
Sbjct 186 TTGTAGCCATGATGATGATTATGATGAAGATGGGTTTGTGCTGTAGATTCTTCGATATTT 245
Query 210 -CTTTATGTCTTAGCGTTTGCTTCTCCTTCTCTTTGCCTTAATCCATTACAGTATCAGAG 268
||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 246 ATTTTATCTCTTAGCTTTTGTTTCTCCTTCTCTTTGCCTTAATCCATTACAGTATCAGAG 305
Query 269 TTTGGTGCTTATGAGCTCTGTTTTTCCAGGACCAAGATTTTTGTCCTTGTTGTATCAGAA 328
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 306 TTTGGTGCTTATGAGCTCTGTTTTTCCAGGACCAAGATTTTTGTCCTTGTTGCAACAGAA 365
Query 329 TTCGAAAACCCTAATTCAAGCTAAGCAAATCCATGCTCAATTAGTCATCAATGGTTGCCA 388
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 366 TTCGAAAACCCTAATTCAAGCTAAGCAAATCCATGCTCAATTAGTCATCAATGGCTGCCA 425
Query 389 AGATAATTCTCTATTTGGCAAACTCATAGGCCATTACTGTTCAAAGCCATCAACAGAAAG 448
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 426 TGATAATTCTCTATTTGGCAAACTCATAGGCCATTACTGTTCAAAGCCATCAACCGAAAG 485
Query 449 C---TCAAAGCTTGCTCATTTACTGGTGTTTCCTCGATTTGGTCATCCTGATAAGTTTCT 505
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 486 CAGCTCAAAGCTTGCTCATTTACTAGTGTTTCCTCGATTTGGTCATCCTGATAAGTTTCT 545
Query 506 CTTCAACACATTGCTTAAATGTAGCAAACCAGAGGACTCGATTCGGATTTTCGCCAATTG 565
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 546 CTTCAACACATTGCTTAAATGTAGCAAACCAGAGGACTCGATTCGGATTTTTGCCAATTA 605
Query 566 GGCTTCAAAAAGTTCGTTGCTTTATCTCAATGAGCGTACTTTTGTTTTCGTCCTTGGCGC 625
|| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 606 TGCATCAAAAAGTTCGTTGCTTTATCTCAATGAGCGCACTTTTGTCTTCGTCCTTGGCGC 665
Query 626 TTGTGCTAGGTCAGCTTCGTCGTCGGCATTACGGGTTGGTAGAATTGTTCATGGGATGGT 685
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 666 TTGTGCTAGGTCAGCTTCGTCGTCGGCGTTACGGGTTGGTAGAATTGTTCATGGGATGGT 725
Query 686 GAAAAAGCTTGGCTTTCTCTATGAATCTGAATTCATTGGAACCACTTTACTCCATTGCTA 745
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||
Sbjct 726 GAAAAAGCTTGGCTTTCTATATGAATCTGAATTGATTGGAACCACTTTACTCCATTTCTA 785
Query 746 CGCTAAGAATGGGGATTTACGTTATGCGAGGAAGGTGTTTGATGAAATGCCTGAGAGAAC 805
|||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 786 CGCTAAGAATGGAGATTTACGTTATGCAAGGAAGGTGTTTGACGAAATGCCTGAGAGAAC 845
Query 806 CTCTGTTACATGGAACGCAATGATCGGTGGATATTGTTCACATAAGGATAAAGGGAATCA 865
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 846 CTCTGTTACATGGAACGCAATGATAGGTGGATATTGTTCACATAAGGATAAAGGCAATCA 905
Query 866 CAATGCAAGAAAGGCTATGATTTTGTTTCGTAGATTCTCTTGCTGTGGTAGTGGAGTTAG 925
|||||| |||||||||||| |||||||| | |||||||||||||||||||||||||||||
Sbjct 906 CAATGCGAGAAAGGCTATGGTTTTGTTTAGGAGATTCTCTTGCTGTGGTAGTGGAGTTAG 965
Query 926 ACCTACTGATACAACCATGGTTTGTATTCTTCCAGCCATTTCTCAGACGGGGTTGATCGA 985
||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| ||||
Sbjct 966 ACCTACTGATACAACCATGGTTTGTGTTCTTTCAGCCATTTCTCAGACGGGTTTGCTCGA 1025
Query 986 AATCGGTTCTCTCGTTCATGGTTACATAGAAAAGCTCGGGTTCACACCCGAAATTGATGT 1045
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1026 AATTGGTTCTCTCGTTCATGGTTACATAGAAAAGCTCGGGTTCACACCCGAAGTTGATGT 1085
Query 1046 CTTTATTGGTACTGGACTTGTAGCCATGTACTCAAAATGCGGCTGCTTAAATAGTGCTTT 1105
|||||| ||||||| |||||| | |||||||||||||||||||||||| || | || ||
Sbjct 1086 CTTTATCGGTACTGCACTTGTCGACATGTACTCAAAATGCGGCTGCTTGAACAACGCATT 1145
Query 1106 CTCAGTCTTCGAGCTAATGAAAGTGAAGAATGTCTTCACATGGACTTCAATGGCAACAGG 1165
||| || |||||||||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct 1146 CTCCGTGTTCGAGCTAATGAAAGTGAAAAATGTCTTTACATGGACTTCAATGGCAACGGG 1205
Query 1166 GCTAGCACTCCATGGAAGAGGAAACGAAACACCGAATCTTTTAAATCGAATGGCGGAATC 1225
|||||| ||| | || |||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1206 GCTAGCTCTCAACGGTAGAGGAAACGAAACACCGAATCTTCTAAACCGAATGGCGGAATC 1265
Query 1226 TGGGATCAAACCAAACGAAGTAACTTTCACTAGCTTGCTTTCGGCCTATCGTCATATAGG 1285
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1266 TGGGATCAAACCAAACGAAATAACTTTCACTAGCTTGCTTTCGGCTTATCGTCATATAGG 1325
Query 1286 TCTTGTTCAAGAAGGAATCGAGCTCTTCAAAAGCATGAGGACAAGATTTGGTGTCACTCC 1345
||||||| |||||||||||||||| ||||| ||||||| |||||||||||||||||| ||
Sbjct 1326 TCTTGTTGAAGAAGGAATCGAGCTGTTCAAGAGCATGAAGACAAGATTTGGTGTCACACC 1385
Query 1346 GGTTATTC-AACACTACGGATGCATAGTAGATCTT-TTGGGTAAAGCAGGGCGGATACAA 1403
|||||| | ||||||| || ||||||||||||||| |||| ||| |||||||||||||||
Sbjct 1386 GGTTAT-CGAACACTATGGTTGCATAGTAGATCTTCTTGG-TAAGGCAGGGCGGATACAA 1443
Query 1404 GAGGCTTATGAGTTTGTATTAGCTATGCCTATAAAACCCGACACCATCTTGTTAAGAAGT 1463
||||||||| ||||| ||||||||||||||||||| || ||| | ||||||||||||||
Sbjct 1444 GAGGCTTATCAGTTTATATTAGCTATGCCTATAAAGCCTGACGCTATCTTGTTAAGAAGC 1503
Query 1464 CTCTGTAATGCCTGCAGCATTTATGGAGAGACTGCAATGGGTGAAGAAATCGGAAAGGCT 1523
||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1504 CTCTGCAATGCCTGCAGCATTTATGGAGAGACTGTAATGGGTGAAGAGATCGGAAAGGCT 1563
Query 1524 CTTCTCGAGATAGAACGAGAGGAGGAGAAGCTTTCAGGTTCTGAGTGCGAAGATTATGTC 1583
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1564 CTTCTCGAGATAGAACGAGAGGACGAGAAGCTTTCGGGTTCTGAGTGCGAAGATTATGTC 1623
Query 1584 GCTTTATCGAATGTGTTAGCTCATAAAGGGAAATGGATAGAGGTAGAGAAGCTGAGGAAC 1643
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1624 GCTTTATCGAATGTGTTAGCTCATAAAGGGAAATGGGTAGAGGTAGAGAAGCTGAGGAAG 1683
Query 1644 GAGATGAAAGAAAGAAGAATAAAAACAAGACCAGGTTTCAGTTTTGTTTAAAATAGCTTG 1703
|||||||||||||||||||| ||||||||||| |||| ||||||||||||| ||||||||
Sbjct 1684 GAGATGAAAGAAAGAAGAATCAAAACAAGACCTGGTTACAGTTTTGTTTAACATAGCTTG 1743
Query 1704 TTACAGGTCTCGGTTCTGTTAAAAGCTCTGTTATCCCCTGTAGACTCTCATGTCTTCTTC 1763
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1744 TTACAGGTCTCGGTTCTGTTAAAAGCTCTGTTATCCCCTGAAGACTCTCTTGTCTTCTTC 1803
Query 1764 TTCTTCTTTAAGCACTTGGATTGAATTGATCATATCAACATCTACACAAATAAGAT-AAA 1822
||||||||||||||| || |||| ||| |||| ||||| ||||||||| || ||| |||
Sbjct 1804 TTCTTCTTTAAGCACATGCATTGGATTCATCACATCAAGATCTACACA--TA-GATTAAA 1860
Query 1823 AGATATTCAGATGCCAATCTTCTTAATCACAACGTTATTAAGACCAAAGTCTTCTTACCG 1882
| |||||||||| ||||||||||||||| | | ||||||| ||||||||||||||||
Sbjct 1861 A-ATATTCAGATCCCAATCTTCTTAATCT-A---T-ATTAAGAACAAAGTCTTCTTACCG 1914
Query 1883 AGTAGAATCTTGTCAAACTCGATGTCTCTTGGTCTCTTCTTGGATTTGTGCTCTGTATCA 1942
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1915 TGTAGAATCTTGTCAAGTTCGATGTCTCTTGATCTCTTCTTGGATTTGTGCTCTGTATCA 1974
Query 1943 CCACCATCAACAGATTGATCATTCTTCCTTGTACCTTGAGTTCC 1986
||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1975 CCACCATTAACAGATTGATTATTCTTCCTTGTACCTTGAGTTCC 2018
> AT3G18960.1 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr3:6542509-6543676 FORWARD LENGTH=847
Length=847
Score = 163 bits (88), Expect = 5e-39
Identities = 98/103 (95%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 1884 GTAGAATCTTGTCAAACTCGATGTCTCTTGGTCTCTTCTTGGATTTGTGCTCTGTATCAC 1943
||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 665 GTAGAATCTTGTCAAGTTCGATGTCTCTTGATCTCTTCTTGGATTTGTGCTCTGTATCAC 606
Query 1944 CACCATCAACAGATTGATCATTCTTCCTTGTACCTTGAGTTCC 1986
|||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 605 CACCATTAACAGATTGATTATTCTTCCTTGTACCTTGAGTTCC 563
Score = 139 bits (75), Expect = 9e-32
Identities = 91/99 (92%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 1707 CAGGTCTCGGTTCTGTTAAAAGCTCTGTTATCCCCTGTAGACTCTCATGTCTTCTTCTTC 1766
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 766 CAGGTCTCGGTTCTGTTAAAAGCTCTGTTATCCCCTGAAGACTCTCTTGTCTTCTTCTTC 707
Query 1767 TTCTTTAAGCACTTGGATTGAATTGATCATATCAACATC 1805
|||||||||||| || |||| ||| |||| ||||| |||
Sbjct 706 TTCTTTAAGCACATGCATTGGATTCATCACATCAAGATC 668
> AT4G01580.1 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr4:685746-686827 FORWARD LENGTH=777
Length=777
Score = 122 bits (66), Expect = 9e-27
Identities = 73/76 (96%), Gaps = 2/76 (3%)
Strand=Plus/Minus
Query 1707 CAGGTCTCGGTTCTGTTAAAAGCTCTGTTATCCCCTGTAG-ACTCTCATGTCTTCTTCTT 1765
||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||
Sbjct 645 CAGGTCTCGGTTCTGTTAAAAGCTCTGTTATCCCCTG-AGGACTCTCTTGTCTTCTTCTT 587
Query 1766 CTTCTTTAAGCACTTG 1781
||||||||||||||||
Sbjct 586 CTTCTTTAAGCACTTG 571
Score = 110 bits (59), Expect = 7e-23
Identities = 59/59 (100%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 1884 GTAGAATCTTGTCAAACTCGATGTCTCTTGGTCTCTTCTTGGATTTGTGCTCTGTATCA 1942
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 GTAGAATCTTGTCAAACTCGATGTCTCTTGGTCTCTTCTTGGATTTGTGCTCTGTATCA 495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98393068200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5