BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479415
Length=1465
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18990.1 | Symbols: VRN1, REM39 | AP2/B3-like transcriptiona... 2204 0.0
> AT3G18990.1 | Symbols: VRN1, REM39 | AP2/B3-like transcriptional
factor family protein | chr3:6548869-6551853 REVERSE LENGTH=1519
Length=1519
Score = 2204 bits (1193), Expect = 0.0
Identities = 1407/1502 (94%), Gaps = 48/1502 (3%)
Strand=Plus/Plus
Query 1 TTTTTGCTTCTTCTTGGGTTTGGTTGGGTCACTCCTCAGGTCAGGTGTGTTaaaaagaaa 60
||||| | |||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 7 TTTTTTCATCTTCTTGGGTTTGGTTGGGTCACTCTTCAGGTCAGGTGTGTAAAAAAGAAA 66
Query 61 aaaagaaaaGAGAGA-----GTGTTGTAACCCCTTTGACTAAAATCTAAAAGAGC---TT 112
|||||||||||||| ||||||||||||||||||||||||||| || || | ||
Sbjct 67 GAAAGAAAAGAGAGATTGTTGTGTTGTAACCCCTTTGACTAAAATCT-AATGAACTTTTT 125
Query 113 TAACACAATAAAACTCCTTCAGATCTGAAAGGGTTC-TC-TCTCTC--AGTCTC--TGTC 166
|||||||| ||||||||||||||||||||||||||| || |||||| |||||| ||||
Sbjct 126 TAACACAACAAAACTCCTTCAGATCTGAAAGGGTTCTTCTTCTCTCTTAGTCTCTTTGTC 185
Query 167 CTTTTATTCTCCGGCGTCGTTTCATGAtctgactctc---tctggtcttc-tcttcttct 222
||||||||||||| ||||||||||||||||||||||| ||| ||||| |||||||||
Sbjct 186 CTTTTATTCTCCGTCGTCGTTTCATGATCTGACTCTCTGGTCTTCTCTTCTTCTTCTTCT 245
Query 223 tc--c---tttttcttacttcGTCACTGTTGTGTCTGAACATGCCACGCCCTTTCTTCCA 277
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 TCTTCTATTTTTTCTTACTTCGTCACTGTTGTGTCTGAACATGCCACGCCCTTTCTTCCA 305
Query 278 TAAGTTGATTTTCTCATCCACTATCCAAGAAAAACGTCTGAGAGTCCCAGATAAGTTTGT 337
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 306 TAAGTTGATTTTCTCATCCACTATCCAAGAAAAACGTCTGAGGGTCCCAGATAAGTTTGT 365
Query 338 GAGTAAATTCAAGGATGAGCTTTCGGTTGCTGTTGCACTCACAGTACCTGATGGTCATGT 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 GAGTAAATTCAAGGATGAGCTTTCGGTTGCTGTTGCACTCACAGTACCTGATGGTCATGT 425
Query 398 TTGGCGTGTAGGACTAAGGAAAGCTGACAACAAAATTTGGTTTCAAGATGGTTGGCAAGA 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 TTGGCGTGTAGGACTAAGGAAAGCTGACAACAAAATTTGGTTTCAAGATGGTTGGCAAGA 485
Query 458 GTTTGTTGACCGTTACTCCATTCGCATTGGTTATCTTTTGATTTTTAGATACGAAGGAAA 517
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 486 GTTTGTTGACCGTTACTCCATTCGCATTGGTTATCTTTTGATTTTTAGATATGAAGGAAA 545
Query 518 CTCTGCCTTCAGCGTCTACATTTTCAATTTATCCCACTCTGAGATCAATTACCATTCCAC 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 CTCTGCCTTCAGCGTCTACATTTTCAATTTATCCCACTCTGAGATCAATTACCATTCCAC 605
Query 578 CGGTCTCATGGATTCCGCACACAACCACTTCAAACGCGCCCGTTTGTTTGAAGACCTTGA 637
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 606 CGGTCTCATGGATTCCGCTCACAACCACTTCAAACGCGCCCGTTTGTTTGAAGACCTTGA 665
Query 638 AGATGAAGATGCCGAGGTCGTCTTTCCTTCTTCCGTGTACCCTTCACCACTTCCTGATTC 697
||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||| ||
Sbjct 666 AGATGAAGATGCCGAGGTCATCTTTCCTTCTTCTGTGTACCCATCACCACTTCCTGAGTC 725
Query 698 TACAGTACCAGCCAACAAAGGGTATGCTGGTTCAGCCATCCAAAGCTTGTTCACTGGATC 757
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
Sbjct 726 TACAGTACCAGCCAACAAAGGGTATGCTAGTTCAGCCATCCAAACCTTGTTCACTGGACC 785
Query 758 TGTTAAAGCTGAAGAGGCAACGCCAACTCCAAAAATTCCGAAAAAGAGAGGGAGGAAGAA 817
||||||||||||||| |||||||||| |||||||| || ||||||||||||||||||||
Sbjct 786 AGTTAAAGCTGAAGAGCCAACGCCAACCCCAAAAATACCTAAAAAGAGAGGGAGGAAGAA 845
Query 818 GAAAAATGCTGATCCTGAGGAAATAAACTCATCAGCTCCGCGGGATGATGACCCAGAGAA 877
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 846 GAAAAATGCTGATCCTGAGGAAATAAACTCATCAGCTCCGCGAGATGATGATCCAGAGAA 905
Query 878 CCGTTCAAAGTTCTACGAGAGTGCTTCTGCGAGAAAGAGAACCGTGACTGCAGAAGAAAG 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 CCGTTCAAAGTTCTACGAGAGTGCTTCTGCGAGAAAGAGAACCGTGACTGCAGAAGAAAG 965
Query 938 AGAGAGGGCCATCAATGCAGCGAAAACGTTCGAGCCAACAAACCCTTTCTTCAGAGTTGT 997
|||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 966 AGAGAGAGCCATCAATGCAGCCAAAACGTTCGAACCAACAAACCCTTTCTTCAGAGTGGT 1025
Query 998 TCTGCGACCATCCTATCTATACAGAGGTTGCATCATGTATCTTCCTTCTGGGTTTGCTGA 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 TCTGCGACCATCCTATCTATACAGAGGTTGCATCATGTATCTTCCTTCTGGGTTTGCTGA 1085
Query 1058 GAAGTACCTAAGTGGGATCTCCGGGTTCATCAAGGTCCAGCTCGCGGAGAAACAATGGCC 1117
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1086 GAAGTACCTAAGTGGGATCTCCGGGTTCATCAAAGTCCAGCTTGCGGAGAAACAATGGCC 1145
Query 1118 TGTTCGATGTCTCTACAAAGCCGGGAGAGCCAAATTTAGTCAAGGATGGTACGAATTCAC 1177
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1146 TGTTCGATGTCTCTACAAAGCCGGGAGAGCCAAATTCAGTCAAGGATGGTACGAATTCAC 1205
Query 1178 TCTAGAGAACAACCTAGGAGAAGGAGACGTCTGCGTGTTCGAGCTGCT-ACGAACCCGAG 1236
||||||||||||| ||||||||||||||||||| ||||| |||||||| | ||||| |||
Sbjct 1206 TCTAGAGAACAACTTAGGAGAAGGAGACGTCTGTGTGTTTGAGCTGCTCA-GAACCAGAG 1264
Query 1237 ATTTCGTTCTGAAAGTGACGGCCTTTCGAGTCAACGAGTACGTCTGAACAAAGCATTATG 1296
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1265 ATTTCGTTTTGAAAGTGACAGCCTTTCGAGTCAACGAGTACGTCTGAACAAAGCATTATG 1324
Query 1297 GTGTGATCATTCTGCAGTGGGGGGATTTGCAAGTACAATGTCGTGTAGGAGTATCTTAAT 1356
|||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1325 GTGTGATCATTCTG--G-------ATTTGCAAGTACAATGTCGTGTAGGAGTATCTTAAT 1375
Query 1357 TTAAAAACAACTAAAA--CTCTCTTCTGGTC------ATT---GCGTCAGTGTCTCGTTT 1405
|||||||||||||||| ||||||||||||| ||| |||||||||||||||||
Sbjct 1376 TTAAAAACAACTAAAAAACTCTCTTCTGGTCTGTGTCATTATTGCGTCAGTGTCTCGTTT 1435
Query 1406 CTTCTC--GGGTTTACTTTATGTTTTCGATGTGGATAAGTTGTTTTCACCCCATTCTATA 1463
||||| ||||||||||| |||| ||||||||||||||||||||| ||| |||| ||||
Sbjct 1436 TTTCTCTCGGGTTTACTTTGTGTTATCGATGTGGATAAGTTGTTTTTACCTCATTATATA 1495
Query 1464 TA 1465
||
Sbjct 1496 TA 1497
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72238584255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5