BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479417
Length=1191
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19000.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1687 0.0
AT3G19002.1 | Symbols: | other RNA | chr3:6554531-6555657 FORW... 377 1e-103
AT3G19010.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 267 2e-70
AT1G06620.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 58.4 2e-07
> AT3G19000.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr3:6553529-6555147
REVERSE LENGTH=1358
Length=1358
Score = 1687 bits (913), Expect = 0.0
Identities = 1124/1221 (92%), Gaps = 33/1221 (3%)
Strand=Plus/Plus
Query 1 ATAAATTAGTCTAGATTCATTTTATTTC-GGGA-CAAGAAAATACTACTCTACGTACGTG 58
|||||||||| ||||||||||||||||| |||| || |||| ||||||||| ||||||
Sbjct 3 ATAAATTAGTATAGATTCATTTTATTTCAGGGAGAAATTAAATTCTACTCTACTTACGTG 62
Query 59 GAACTATCCTATAAATCACCACCAACCGCACCACT-A--ATC---A--T-C---G-ATA- 104
| | ||||||||||| || |||||||||||||||| | ||| | | | | ||
Sbjct 63 GCATTATCCTATAAAGCAACACCAACCGCACCACTAATCATCGATATCTCCAAAGCCTAC 122
Query 105 TC-------T--CCA-AAG-CCCACTGCAAAAACCGCCATGGGAGAACTCGACGAAGCTT 153
|| | ||| ||| |||||| ||||| |||||||||||||||||||||||||
Sbjct 123 TCTAAAAAATAACCACAAGAATCACTGCCAAAACTGCCATGGGAGAACTCGACGAAGCTT 182
Query 154 TTATCCAAGCTCCAGAACACAGACCAAACACTCACCTCACAAACTCCAATGATTTCATTT 213
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 183 TTATCCAAGCTCCAGAACACAGACCCAACACTCACCTCACAAACTCCGGTGATTTCATTT 242
Query 214 ACTCCGACGAGATCCCGACCATCGATCTCTCTTCTCTCAG-AGAT-CCCGATCATGACAA 271
|||||||||||||||||||||||| |||||||||||| | |||| | | ||||||||||
Sbjct 243 TCTCCGACGAGATCCCGACCATCGACCTCTCTTCTCTC-GAAGATACTC-ATCATGACAA 300
Query 272 GACGGTGATCGCGGCGGAGATTGCAGAGGCATGCAAGAGATGGGGATTTTTCCAGGTGAT 331
||| | |||||| |||||||||||||||||||||||||||||||||||| || |||||
Sbjct 301 GACTGCGATCGCCAAGGAGATTGCAGAGGCATGCAAGAGATGGGGATTTTTTCAAGTGAT 360
Query 332 CAACCACGGCTTACCTTCGGATTTAAGGCGTCGTGTAGAGGAGGCATG-TGCTGAGTTTT 390
|||||| ||||| ||||| | |||||||| |||||||||| || || | |||||||||||
Sbjct 361 CAACCATGGCTTGCCTTCAGCTTTAAGGCATCGTGTAGAGAAGACA-GCTGCTGAGTTTT 419
Query 391 TCAATCTAACGACGGAGGAGAAGAGGAAAGTGAAAAGAGACGAAGTGAATCCTATGGGTT 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCAATCTAACGACGGAGGAGAAGAGGAAAGTGAAAAGAGACGAAGTGAATCCTATGGGTT 479
Query 451 ATCACGACGAGGAACACACCAAGAACGTTAGAGACTGGAAAGAGATTTTTGATTTCTTCT 510
|||||||||| |||||||| |||||||||||||| ||||| || ||||| ||||||||||
Sbjct 480 ATCACGACGAAGAACACACTAAGAACGTTAGAGATTGGAAGGAAATTTTCGATTTCTTCT 539
Query 511 TGCAAGATTCGACGATCGTTCCGGCGACAACGGATCCGGAAGACACTGAGCTCAGAAAGC 570
| |||||||| ||||||||||||||| || |||| |||||||| ||||||||| ||||||
Sbjct 540 TACAAGATTCCACGATCGTTCCGGCGTCACCGGAGCCGGAAGATACTGAGCTCCGAAAGC 599
Query 571 TCACGAACCAGTGGCCTCAAAACCCTTCTCATTTCAGAGAGGTATGCCAAGAATATGCAA 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCACGAACCAGTGGCCTCAAAACCCTTCTCATTTCAGAGAGGTATGCCAAGAATATGCAA 659
Query 631 GAGAAGTTGAGAAGTTAGCTTTTAGGCTATTGGAACTTGTCTCCATTAGTTTGGGTCTAC 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GAGAAGTTGAGAAGTTAGCTTTTAGGCTATTGGAACTTGTCTCCATTAGTTTGGGTCTAC 719
Query 691 CTGGTGATCGGTTAACCGGGTTCTTCAATGAGCAAACTAGTTTTTTGCGGTTTAACCATT 750
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CTGGTGATCGGCTAACCGGTTTCTTCAATGAGCAAACTAGTTTTTTGCGGTTTAACCATT 779
Query 751 ACCCTCCTTGCCCGAACCCCGAGCTGGCATTAGGTGTTGGACGTCACAAAGATGGAGGAG 810
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 780 ACCCTCCTTGCCCGAACCCCGAGCTAGCATTAGGTGTTGGACGTCACAAAGATGGAGGAG 839
Query 811 CTTTAACCGTCTTGGCCCAAGATAGTGTAGGTGGATTACAAGTGAGTCGTAGATCGGATG 870
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CTTTAACCGTCCTGGCCCAAGATAGTGTAGGTGGATTACAAGTGAGTCGTAGATCGGATG 899
Query 871 GACAATGGATCCCCGTGAAACCGATCTCGGATGCTTTGATCATTAACATTGGCAATTGTA 930
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 900 GACAATGGATCCCCGTGAAACCGATCTCGGATGCTTTGATCATTAACATGGGCAATTGTA 959
Query 931 TTCAGGTGTGGACAAATGATAAGTATTGGAGTGCTGAACATAGAGTGGTGGTGAACACAA 990
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||
Sbjct 960 TTCAGGTGTGGACAAATGATGAGTATTGGAGTGCTGAACATAGAGTGGTCGTGAATACAA 1019
Query 991 GCAAAGAGAGATTCTCAATACCATTCTTCTTCTTCCCGTCACATGAAGCCAACATTGCGC 1050
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||
Sbjct 1020 GCAAAGAGAGATTCTCAATACCATTCTTCTTCTTCCCATCACATGAAGCCAATATTGAGC 1079
Query 1051 CACTGGAAGAGCTTATAAGTGAAGAAAACCCGCCTTGTTACAAAAAGTACAATTGGGGAA 1110
|| |||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1080 CATTGGAGGAGCTTATAAGTGAGGAAAACCCGCCTTGTTATAAAAAGTACAATTGGGGAA 1139
Query 1111 AGTTCTTTGTTTCAAGAAACAGAAGTGATTTCAAGAAGCTCGAGGTTGAGAATATCCAGA 1170
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1140 AGTTCTTTGTTTCAAGAAACAGAAGTGATTTCAAGAAACTCGAGGTTGAGAATATCCAGA 1199
Query 1171 TTGATCACTTCAAGGCTTAGT 1191
|||||||||||||||||||||
Sbjct 1200 TTGATCACTTCAAGGCTTAGT 1220
> AT3G19002.1 | Symbols: | other RNA | chr3:6554531-6555657 FORWARD
LENGTH=1009
Length=1009
Score = 377 bits (204), Expect = 1e-103
Identities = 357/425 (84%), Gaps = 33/425 (8%)
Strand=Plus/Minus
Query 1 ATAAATTAGTCTAGATTCATTTTATTTC-GGGA-CAAGAAAATACTACTCTACGTACGTG 58
|||||||||| ||||||||||||||||| |||| || |||| ||||||||| ||||||
Sbjct 497 ATAAATTAGTATAGATTCATTTTATTTCAGGGAGAAATTAAATTCTACTCTACTTACGTG 438
Query 59 GAACTATCCTATAAATCACCACCAACCGCACCACT-A--ATC---A--T-C---G-ATA- 104
| | ||||||||||| || |||||||||||||||| | ||| | | | | ||
Sbjct 437 GCATTATCCTATAAAGCAACACCAACCGCACCACTAATCATCGATATCTCCAAAGCCTAC 378
Query 105 TC-------T--CCA-AAG-CCCACTGCAAAAACCGCCATGGGAGAACTCGACGAAGCTT 153
|| | ||| ||| |||||| ||||| |||||||||||||||||||||||||
Sbjct 377 TCTAAAAAATAACCACAAGAATCACTGCCAAAACTGCCATGGGAGAACTCGACGAAGCTT 318
Query 154 TTATCCAAGCTCCAGAACACAGACCAAACACTCACCTCACAAACTCCAATGATTTCATTT 213
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 317 TTATCCAAGCTCCAGAACACAGACCCAACACTCACCTCACAAACTCCGGTGATTTCATTT 258
Query 214 ACTCCGACGAGATCCCGACCATCGATCTCTCTTCTCTCAGA-GATCC-CGATCATGACAA 271
|||||||||||||||||||||||| |||||||||||| || ||| | | ||||||||||
Sbjct 257 TCTCCGACGAGATCCCGACCATCGACCTCTCTTCTCTC-GAAGATACTC-ATCATGACAA 200
Query 272 GACGGTGATCGCGGCGGAGATTGCAGAGGCATGCAAGAGATGGGGATTTTTCCAGGTGAT 331
||| | |||||| |||||||||||||||||||||||||||||||||||| || |||||
Sbjct 199 GACTGCGATCGCCAAGGAGATTGCAGAGGCATGCAAGAGATGGGGATTTTTTCAAGTGAT 140
Query 332 CAACCACGGCTTACCTTCGGATTTAAGGCGTCGTGTAGAGGAGGCATG-TGCTGAGTTTT 390
|||||| ||||| ||||| | |||||||| |||||||||| || || | |||||||||||
Sbjct 139 CAACCATGGCTTGCCTTCAGCTTTAAGGCATCGTGTAGAGAAGACA-GCTGCTGAGTTTT 81
Query 391 TCAAT 395
|||||
Sbjct 80 TCAAT 76
> AT3G19010.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr3:6556197-6557938
REVERSE LENGTH=1235
Length=1235
Score = 267 bits (144), Expect = 2e-70
Identities = 556/749 (74%), Gaps = 52/749 (7%)
Strand=Plus/Plus
Query 311 ATGGGGATTTTTCCAGGTGATCAACCACGGCT-TACCTTCGGATTTAAGGCGTCGTGTAG 369
|||||||||||| |||||| | || || || | | ||||| || ||||| ||||| |
Sbjct 241 ATGGGGATTTTTTCAGGTGCTTAATCATGG-TGTGCCTTCTGACGCAAGGCAACGTGTGG 299
Query 370 AGGAGGCATGTGCTGA-GTTTTTCAATCTAACGACGGAGGAGAAGAGGAAA-GTGAAAAG 427
|| || | |||| || ||||||| || | | | ||| ||||||| ||| ||||| ||
Sbjct 300 AGAAGAC-TGTGAAGATGTTTTTCGATTTGCCTATGGAAGAGAAGA-TAAAGGTGAAGAG 357
Query 428 AGACGAAGTGAATCCTAT-GGGTTATCACGA-CGAGGAACACACCAAGAACGTTAGAGAC 485
|||||| ||||||||| | ||| ||||| || || ||||||||||||||||||| |||
Sbjct 358 AGACGATGTGAATCCTGTAGGG-TATCATGATGGA-GAACACACCAAGAACGTTAAAGAT 415
Query 486 TGGAAAG-AGATTTTTGATTTCTTCTTGC-AAGATTCGACGATCGTTCCGGCGACAACGG 543
||||||| || | |||||| | || || | ||||| | | | || |||| | || || |
Sbjct 416 TGGAAAGAAG-TGTTTGATAT-TTATTTCAAAGATCCAATGGTCATTCCTTCAACCACTG 473
Query 544 ATCCGGAAGACACTG-A-GC-TCAGA-AAGCTCACGAACCAGTGGCCTCAAAAC-CCTTC 598
|||| |||| | || | || | ||| | | || ||| ||||||||| || | |||||
Sbjct 474 ATCCTGAAG--A-TGAAGGCTTAAGACTTGTTTAC-AACAAGTGGCCTC-AATCTCCTTC 528
Query 599 TCATTTCAGAGAGGTATGCCAAGAATATGCAAGAGAAGTTGAGAAGTTAGCTTTTAGGCT 658
| ||||||| || | ||| ||| |||||| ||| | | ||| || ||||| || | |||
Sbjct 529 TGATTTCAGGGAAGCATGTGAAGTATATGCGAGACACGCTGAAAAATTAGCGTTCAAGCT 588
Query 659 ATTGGAACTTG-TCTCCATT-AG-TTTGGGTCTACCTGGTGATCGGTTAAC-CGGGTTCT 714
||||||| || | | | || || || || | | || || | ||| | | | ||
Sbjct 589 CTTGGAAC-TGAT-TTCGTTAAGCTTAGGCT-TGCCAAAAGAGC-GTTTTCATGACTACT 644
Query 715 TCAATGAGCAAACT-AGTTTTTTGC-GGTTTAACCATTACCCTCCTTGCCCGAA-CCCCG 771
|||| || |||| | |||||||| | || | || | ||| || || || || || || |
Sbjct 645 TCAAAGAACAAA-TGAGTTTTTT-CAGGATAAATCGTTATCCACCATGTCC-AAGACCTG 701
Query 772 AGCTGGCATTAGGTGTTGGACGTCACAAAGATGGAGGAGCTTTAACCGTC--TTGGCCCA 829
| || || ||||||||||| | ||||||||| | || | ||| ||| ||||| ||
Sbjct 702 ACCTAGCTTTAGGTGTTGGTCACCACAAAGAT-GCCGA-CGTTATTAGTCTATTGGCTCA 759
Query 830 AGATAG-TGTAGGTGGATTACAAGTGAGTCGTAGATCGGATGGACAATGGATCCCCG-TG 887
|||| | ||| || ||||||||||| |||||||||||||| || ||| | ||| |
Sbjct 760 AGAT-GATGTTGGAGGATTACAAGTTAGTCGTAGATCGGACGGTGTTTGG-TTTCCGATT 817
Query 888 A-AACCGATCTCGGATGCT-TTGATCATTAACATTGGCAATTGTATTCAGGTGTGGACAA 945
| | ||| || | ||||| ||| |||| || || ||||||||||| || | ||||| |
Sbjct 818 AGACCCG-TCCCTAATGCTCTTG-TCATCAATATAGGCAATTGTATGGAGATATGGACGA 875
Query 946 ATGATAAGTATTGGAGTGCTGAACATAGAGTGGTGGTGAACACAAGCAA-AGAGAGATTC 1004
|||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
Sbjct 876 ATGACAAGTATTGGAGTGCTGAACATAGAGTGGTGGTGAACACAA-CAAGAGAGAGATAC 934
Query 1005 TCAATACCATTCTTCTTCTTCCCGTCACA 1033
|| |||||||||||||| || || |||||
Sbjct 935 TCGATACCATTCTTCTTGTTGCCTTCACA 963
> AT1G06620.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr1:2025601-2027271
FORWARD LENGTH=1292
Length=1292
Score = 58.4 bits (31), Expect = 2e-07
Identities = 36/38 (95%), Gaps = 1/38 (3%)
Strand=Plus/Plus
Query 304 GCA-AGAGATGGGGATTTTTCCAGGTGATCAACCACGG 340
||| ||| ||||||||||||||||||||||||||||||
Sbjct 279 GCAGAGAAATGGGGATTTTTCCAGGTGATCAACCACGG 316
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58483634925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5