BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479418
Length=1175
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19010.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1897 0.0
AT3G19000.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 289 5e-77
> AT3G19010.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr3:6556197-6557938
REVERSE LENGTH=1235
Length=1235
Score = 1897 bits (1027), Expect = 0.0
Identities = 1128/1176 (96%), Gaps = 9/1176 (1%)
Strand=Plus/Plus
Query 1 AAACTCTTTCTACGTGTAA-CAATGGAGGATCTTGATCCAACCTACATCCAAGCACCAGA 59
||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 56 AAACTCTTTTTACGT-CAAGCAATGGAGGATCTTGATCCAACCTACATCCAAGCACCAGA 114
Query 60 GCATAGATCAGATTCAAATTTCATCCCTAACCAACCCGAAGAAATACCCGTGATCGATCT 119
||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 115 GCATAGATCAGATTCGAATTTCATCCCTAACCAACCAGAAGAAATACCCGTGATTGATCT 174
Query 120 ATCGCGCCTCGATGACCCCGAAGATGTCCAAAACGTTATCTCAGAGATCGGTGATGCTTG 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 CTCGCGCCTCGATGACCCCGAAGATGTCCAAAACGTTATCTCAGAGATCGGTGATGCTTG 234
Query 180 TGAAAAATGGGGATTTTTTCAGGTGATTAATCATGGTGTGCCTTCCCACGCAAGGCAACG 239
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 235 TGAAAAATGGGGATTTTTTCAGGTGCTTAATCATGGTGTGCCTTCTGACGCAAGGCAACG 294
Query 240 TGTGGAGAAGACTGTGAAGATGTTTTTCGATTTGCCAATGGAAGAGAAGATAAAGGTGAA 299
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 295 TGTGGAGAAGACTGTGAAGATGTTTTTCGATTTGCCTATGGAAGAGAAGATAAAGGTGAA 354
Query 300 GAGAGACGAAGTGAATCCTGTAGGGTATCATGATGGAGAACACACCAAGAACGTTAAAGA 359
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GAGAGACGATGTGAATCCTGTAGGGTATCATGATGGAGAACACACCAAGAACGTTAAAGA 414
Query 360 TTGGAAAGAAGTGTTTGATATTTATTTCAAAGATCCAATGGTTATTCCTTCTTCCACTGA 419
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 415 TTGGAAAGAAGTGTTTGATATTTATTTCAAAGATCCAATGGTCATTCCTTCAACCACTGA 474
Query 420 TCCTGAAGATGAAGGTTTAAGGCTTGTTTACAACAAGTGGCCTCAATCTCCTTCTGATTT 479
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 475 TCCTGAAGATGAAGGCTTAAGACTTGTTTACAACAAGTGGCCTCAATCTCCTTCTGATTT 534
Query 480 CAGGGAAGCATGTGAAGTATATGCAAAACACGCTGAAAAATTAGCGTTCAAGCTCTTGGA 539
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 535 CAGGGAAGCATGTGAAGTATATGCGAGACACGCTGAAAAATTAGCGTTCAAGCTCTTGGA 594
Query 540 ACTGATTTCATTAAGCTTAGGCTTACCAAAAGAGCGTTTTCATGATTACTTCAAAGAACA 599
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 595 ACTGATTTCGTTAAGCTTAGGCTTGCCAAAAGAGCGTTTTCATGACTACTTCAAAGAACA 654
Query 600 AATGAGTTTTTTCAGGATAAATCGTTATCCACCATGTCCAAGACCTGACCTAGCTTTAGG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 AATGAGTTTTTTCAGGATAAATCGTTATCCACCATGTCCAAGACCTGACCTAGCTTTAGG 714
Query 660 TGTTGGTCACCACAAAGATGCAGACGTTATTAGTCTATTGGCTCAAGATGAAGTTGGAGG 719
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 715 TGTTGGTCACCACAAAGATGCCGACGTTATTAGTCTATTGGCTCAAGATGATGTTGGAGG 774
Query 720 ATTACAAGTGAGTCGTAGATCGGACGGTGTTTGGTTTCCGATTAGACCCGTCCCTAATGC 779
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 ATTACAAGTTAGTCGTAGATCGGACGGTGTTTGGTTTCCGATTAGACCCGTCCCTAATGC 834
Query 780 TCTTGTCATCAATATAGGCAACTGTATGGAGATATGGACGAATGATAAGTATTGGAGTGC 839
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 835 TCTTGTCATCAATATAGGCAATTGTATGGAGATATGGACGAATGACAAGTATTGGAGTGC 894
Query 840 TGAACATAGAGTGGTGGTGAACACAACAAGAGAGAGATACTCAATACCATTCTTCTTGTT 899
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 895 TGAACATAGAGTGGTGGTGAACACAACAAGAGAGAGATACTCGATACCATTCTTCTTGTT 954
Query 900 GCCTTCACACGATGTGGAAGTGAAGCCATTAGAAGAGCTTGTGAGTCCTGAAAACCCTCC 959
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 955 GCCTTCACACGATGTGGAAGTGAAGCCATTAGAAGAACTTGTGAGTCCTGAAAACCCTCC 1014
Query 960 AAGATACAAAGGCTATAAATGGGGCAAGTTCTACGTCAGTAGGAACAGAAGTGATTTTCG 1019
|| ||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 1015 AAAATACAAAGGCTATAAATGGGGTAAGTTCTACGTCAGTAGGAATAGAAGCGATTTTCG 1074
Query 1020 AAAGCTGGAAATCGAAAACATCCAAATCGATGACTTCAAAGTTAAAACTTAATCTACTAT 1079
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1075 AAAACTGGAAATCGAAAACATCCAAATCGATGACTTCAAAGTTAAAACTTAATATACTAT 1134
Query 1080 GTATCGATTGtttttttttttttttttGACCAAGCTATGATATTAATCAAATAATGTGTG 1139
|||||| | ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1135 GTATCG---GCTTTTTTTTTGTTT----ACCAAGCTATGATATTAATCAAATAATGTGTG 1187
Query 1140 TGGGACTGAATTTGTGTCGGAAACAATATATTTGAT 1175
||||||| ||||||||||||||| |||| |||||||
Sbjct 1188 TGGGACTTAATTTGTGTCGGAAAGAATAAATTTGAT 1223
> AT3G19000.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr3:6553529-6555147
REVERSE LENGTH=1358
Length=1358
Score = 289 bits (156), Expect = 5e-77
Identities = 673/912 (74%), Gaps = 78/912 (9%)
Strand=Plus/Plus
Query 186 ATGGGGATTTTTTCAGGTGATTAATCATGG-TGTGCCTTCCCACGC---AAGGCAACGTG 241
||||||||||||||| ||||| || ||||| | |||||| || || |||||| ||||
Sbjct 340 ATGGGGATTTTTTCAAGTGATCAACCATGGCT-TGCCTT--CA-GCTTTAAGGCATCGTG 395
Query 242 TGGAGAAGACTG-TGAAGATGTTTTTCGATTTGCCAATGGAAGAGAAGA-TAAAGGTGAA 299
| |||||||| | || || ||||||| || | | | ||| ||||||| ||| |||||
Sbjct 396 TAGAGAAGACAGCTGCTGA-GTTTTTCAATCTAACGACGGAGGAGAAGAGGAAA-GTGAA 453
Query 300 GAGAGACGAAGTGAATCCTGTAGGG-TATCATGATGGAGAACACACCAAGAACGTTAAAG 358
|||||||||||||||||| | ||| ||||| || | ||||||||| |||||||||| ||
Sbjct 454 AAGAGACGAAGTGAATCCTAT-GGGTTATCACGACGAAGAACACACTAAGAACGTTAGAG 512
Query 359 ATTGGAAAGAAGTGTTT-GATAT-TTATTTCAAAGA-TCCAATGGTTATTCCTTCTTCCA 415
||||||| ||| | ||| ||| | || || | |||| ||| | | | |||| | | ||
Sbjct 513 ATTGGAAGGAAAT-TTTCGATTTCTTCTTAC-AAGATTCC-ACGATCGTTCCGGCGT-CA 568
Query 416 -CTGATCCTGAAG--A-TGAAGGT-TTAAGGCTTGTTTAC-AACAAGTGGCCTC-AATCT 468
| || || |||| | || || | || || | || ||| ||||||||| || |
Sbjct 569 CCGGAGCCGGAAGATACTG-AGCTCCGAAAGC----TCACGAACCAGTGGCCTCAAAAC- 622
Query 469 CCTTCTGATTTCAGGGAAGCATGTGAAGTATATGCAAAACACGCTGAAAAATTAGCGTTC 528
|||||| ||||||| || | ||| ||| |||||||| | | | ||| || ||||| ||
Sbjct 623 CCTTCTCATTTCAGAGAGGTATGCCAAGAATATGCAAGAGAAGTTGAGAAGTTAGCTTTT 682
Query 529 AAGCTCTTGGAAC-TGAT-TTCATTAAGCTTAGGCT-TACCAAAAGAGC-GTTTTCATGA 584
| ||| ||||||| || | | |||| || || || | |||| || | | | | |
Sbjct 683 AGGCTATTGGAACTTG-TCTCCATT-AG-TTTGGGTCTACCTGGTGATCGGCTAAC-CGG 738
Query 585 TTACTTCAAAGAACAAA-TGAGTTTTTT-CAGGATAAATCGTTATCCACCATGTCC-AAG 641
|| |||||| || |||| | |||||||| | || | || | ||| || || || || ||
Sbjct 739 TTTCTTCAATGAGCAAACT-AGTTTTTTGC-GGTTTAACCATTACCCTCCTTGCCCGAA- 795
Query 642 ACCTGACCTAGCTTTAGGTGTTGGTCACCACAAAGATGCA-GACGTTATTAGTC-TATTG 699
|| || ||||| ||||||||||| | |||||||||| | || | | ||| | | ||
Sbjct 796 CCCCGAGCTAGCATTAGGTGTTGGACGTCACAAAGATGGAGGA-GCT-TTAACCGTCCTG 853
Query 700 GCTCAAGATGAAGT-T-GGAGGATTACAAGTGAGTCGTAGATCGGACGGTGTTTGG-TTT 756
|| |||||| ||| | || |||||||||||||||||||||||||| || ||| |
Sbjct 854 GCCCAAGAT--AGTGTAGGTGGATTACAAGTGAGTCGTAGATCGGATGGACAATGGATCC 911
Query 757 CCGATTAGACCCG-TCCCTAATGCTCTTG-TCATCAATATAGGCAACTGTATGGAGATAT 814
||| | | | ||| || | ||||| ||| |||| || || ||||| ||||| || | |
Sbjct 912 CCG-TGA-AACCGATCTCGGATGCT-TTGATCATTAACATGGGCAATTGTATTCAGGTGT 968
Query 815 GGACGAATGATAAGTATTGGAGTGCTGAACATAGAGTGGTGGTGAACACAA-CAAGAGAG 873
|||| |||||| |||||||||||||||||||||||||||| ||||| |||| ||| ||||
Sbjct 969 GGACAAATGATGAGTATTGGAGTGCTGAACATAGAGTGGTCGTGAATACAAGCAA-AGAG 1027
Query 874 AGATACTCAATACCATTCTTCTTGTTGCCTTCACACGATGTGGA-AGTGAAGCCATTAGA 932
|||| |||||||||||||||||| || || ||||| || | | | ||| |||||| ||
Sbjct 1028 AGATTCTCAATACCATTCTTCTTCTTCCCATCACATGAAGCCAATATTGA-GCCATTGGA 1086
Query 933 AGAGCTTGTGAGTCCTGAAAACCCTCCAAG--ATACAAAGGCTATAAATGGGGCAAGTTC 990
|||||| | ||| |||||||| || | ||| |||| || || ||||| ||||||
Sbjct 1087 GGAGCTTATAAGTGAGGAAAACCCGCCTTGTTATAAAAAG--TACAATTGGGGAAAGTTC 1144
Query 991 TACGT--CAGTAGGAACAGAAGTGATTTTC--GAAAGCTGGAAATCGAAAACATCCAAAT 1046
| || || || |||||||||||||| | |||| || || | || || ||||| ||
Sbjct 1145 TTTGTTTCA--AGAAACAGAAGTGATTT-CAAGAAA-CTCGAGGTTGAGAATATCCAGAT 1200
Query 1047 CGATGACTTCAA 1058
||| |||||||
Sbjct 1201 TGATCACTTCAA 1212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57680426205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5